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Shigella flexneri 2a str. 2457T, complete genome - 1..4599354 4061 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 299 42.70 -2 323692..324054 - 120 30061872 gtrAI S0321 - putative flippase 300 50.68 0 324316..324609 - 97 30061873 - S0322 - integrase fragment 301 52.24 0 324718..325431 - 237 30061874 - S0323 - IS600 orfB 302 46.53 -1 325572..325874 - 100 30061875 - S0324 - IS600 orfA 303 46.82 -1 326060..327223 + 387 30061876 - S0325 - putative phage integrase 304 33.93 -2 327572..328744 + 390 30061877 - S4804 - hypothetical protein 305 49.43 0 329548..329988 - 146 30061878 - S0326 - IS600 orfB 306 54.43 0 330729..331349 - 206 30061879 - S0327 - IS629 orfB 307 55.25 0 331711..331929 - 72 30061880 - S0328 - IS629, orfA 308 53.67 0 332080..333195 + 371 30061881 yaiC S0329 - diguanylate cyclase AdrA 309 54.81 0 333212..334021 - 269 30061882 proC S0330 - pyrroline-5-carboxylate reductase 310 56.21 +1 334141..334599 + 152 161486538 yaiI S0331 - hypothetical protein 311 52.00 0 334782..335306 + 174 30061884 aroL S0332 - shikimate kinase II 312 48.44 0 335356..335547 + 63 30061885 yaiA S0333 - hypothetical protein 313 46.17 -1 335805..336482 + 225 30061886 aroM S0334 - hypothetical protein 314 51.23 0 336554..336838 + 94 30061887 yaiE S0335 - hypothetical protein 315 48.94 0 337047..337328 + 93 30061888 - S0336 - hypothetical protein 316 43.64 -1 337325..337780 + 151 30061889 - S0337 - hypothetical protein 317 51.54 0 337858..338769 - 303 30061890 rdgC S0339 - recombination associated protein 318 55.70 +1 338894..339787 + 297 161486537 yajF S0338 - fructokinase 319 50.51 0 339945..341126 - 393 30061892 araJ S0341 - protein AraJ 320 54.04 0 341252..344395 - 1047 30061893 sbcC S0342 - exonuclease subunit SbcC 321 53.20 0 344392..345594 - 400 30061894 sbcD S0343 - exonuclease subunit SbcD 322 53.91 0 345784..346473 + 229 30061895 phoB S0344 - transcriptional regulator PhoB 323 53.24 0 346531..347826 + 431 30061896 phoR S0345 - phosphate regulon sensor protein 324 55.53 0 348233..349552 + 439 30061897 brnQ S0346 - branched-chain amino-acid transport system II carrier protein 325 52.55 0 349628..351001 + 457 30061898 proY S0347 - putative proline-specific permease 326 54.35 0 351157..352974 + 605 30061899 malZ S0348 - maltodextrin glucosidase 327 53.97 0 353645..354715 + 356 30061900 queA S0350 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 328 50.71 0 354770..355897 + 375 30061901 tgt S0351 - queuine tRNA-ribosyltransferase 329 49.55 0 355920..356252 + 110 30061902 yajC S0352 - preprotein translocase subunit YajC 330 53.19 0 356280..358127 + 615 30061903 secD S0353 - preprotein translocase subunit SecD 331 51.54 0 358138..359109 + 323 30061904 secF S0354 - preprotein translocase subunit SecF 332 46.55 -1 359238..359585 + 115 30061905 yajD S0355 - hypothetical protein 333 50.51 0 359762..360646 - 294 30061906 tsx S0356 - outer membrane protein Tsx 334 47.22 -1 360944..361483 - 179 161486536 yajI S0357 - hypothetical protein 335 50.67 0 361634..362083 + 149 30061908 ybaD S0358 - transcriptional regulator NrdR 336 55.71 +1 362087..363190 + 367 30061909 ribD S0359 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 337 52.23 0 363279..363749 + 156 30061910 ribH S0360 - riboflavin synthase subunit beta 338 54.05 0 363769..364188 + 139 30061911 nusB S0361 - transcription antitermination protein NusB 339 54.40 0 364266..365243 + 325 30061912 thiL S0362 - thiamine monophosphate kinase 340 52.79 0 365221..365739 + 172 30061913 pgpA S0363 - phosphatidylglycerophosphatase A 341 53.89 0 366822..368684 - 620 30061914 dxs S0365 - 1-deoxy-D-xylulose-5-phosphate synthase 342 54.33 0 368709..369608 - 299 30061915 ispA S0366 - geranyltranstransferase 343 55.14 0 369608..369850 - 80 30061916 xseB S0367 - exodeoxyribonuclease VII small subunit 344 51.62 0 370056..371504 + 482 30061917 yajK S0368 - thiamine biosynthesis protein ThiI 345 56.28 +1 371558..372154 - 198 30061918 thiJ S0369 - hypothetical protein 346 51.32 0 372111..373022 - 303 30061919 apbA S0370 - 2-dehydropantoate 2-reductase 347 49.80 0 373190..373681 + 163 30061920 yajQ S0371 - nucleotide-binding protein 348 35.93 -2 373741..375471 - 576 30061921 - S4809 - hypothetical protein 349 36.12 -2 375524..377677 - 717 30061922 - S4810 - hypothetical protein 350 52.90 0 377828..378103 + 91 30061923 - S0372 - IS1 orfA 351 52.38 0 378231..378524 + 97 30061924 - S4811 - IS1 orfB 352 44.58 -1 378572..378811 - 79 30061925 - S4812 - hypothetical protein 353 49.36 0 379105..379416 - 103 30061926 - S0373 - hypothetical protein 354 53.38 0 379600..380487 - 295 30061927 cyoE S0374 - protoheme IX farnesyltransferase 355 50.00 0 380502..380831 - 109 30061928 cyoD S0375 - cytochrome o ubiquinol oxidase subunit IV 356 53.66 0 380831..381445 - 204 30061929 cyoC S0376 - cytochrome o ubiquinol oxidase subunit III 357 53.24 0 383978..385027 - 349 30061930 - S0379 - ISSfl3 orfD 358 52.91 0 385243..385431 - 62 146133915 - S0380 - ISSfl3 orfC 359 51.85 0 385428..385562 - 44 30061932 - S0381 - ISSfl3 orfC 360 56.90 +1 385582..385929 - 115 30061933 - S0382 - ISSfl3 orfB 361 51.61 0 385926..386423 - 165 30061934 - S0383 - ISSfl3 orfA 362 54.27 0 386970..388445 - 491 30061935 ampG S0384 - muropeptide transporter 363 51.12 0 388489..389067 - 192 161486535 yajG S0385 - hypothetical protein 364 48.43 0 389372..389689 + 105 161486534 bolA S0386 - transcriptional regulator BolA 365 51.19 0 390033..391331 + 432 30061938 tig S0387 - trigger factor 366 50.96 0 391578..392201 + 207 30061939 clpP S0388 - ATP-dependent Clp protease proteolytic subunit 367 51.76 0 392327..393601 + 424 30061940 clpX S0389 - ATP-dependent protease ATP-binding subunit 368 52.36 0 393789..396143 + 784 30061941 lon S0390 - DNA-binding ATP-dependent protease La 369 49.45 0 396352..396624 + 90 30061942 hupB S0391 - transcriptional regulator HU subunit beta 370 52.19 0 396816..398687 + 623 30061943 ybaU S0392 - peptidyl-prolyl cis-trans isomerase (rotamase D) 371 54.84 0 398838..399209 + 123 30061944 ybaV S0393 - hypothetical protein 372 46.12 -1 399303..399701 + 132 30061945 ybaW S0394 - hypothetical protein 373 51.29 0 399753..400448 - 231 30061946 ybaX S0395 - queuosine biosynthesis protein QueC 374 51.26 0 402293..403123 + 276 30061947 cof S0397 - hypothetical protein 375 49.82 0 403190..403735 + 181 30061948 ybaO S0398 - putative LRP-like transcriptional regulator 376 54.15 0 403765..405537 + 590 30061949 mdlA S0399 - putative multidrug transporter membrane\ATP-binding components 377 55.50 0 405530..407311 + 593 30061950 mdlB S0400 - putative multidrug transporter membrane\ATP-binding components 378 51.03 0 407492..407830 + 112 30061951 glnK S0401 - nitrogen regulatory protein P-II 2 379 55.56 0 407860..409146 + 428 30061952 amtB S0402 - ammonium transporter 380 52.50 0 409195..410055 - 286 30061953 tesB S0403 - acyl-CoA thioesterase II 381 54.28 0 410273..410845 + 190 30061954 ybaY S0404 - hypothetical protein 382 54.33 0 410956..412284 + 442 30061955 - S0405 - IS4 orf 383 56.73 +1 412314..412625 - 103 30061956 ybaZ S0406 - hypothetical protein 384 50.00 0 413004..413357 + 117 30061957 ybaA S0408 - hypothetical protein 385 47.71 0 413399..414949 - 516 30061958 ylaB S0409 - hypothetical protein 386 47.13 -1 415113..415583 - 156 30061959 ylaC S0410 - hypothetical protein 387 40.18 -2 416422..416640 - 72 30061960 hha S0412 - hemolysin expression-modulating protein 388 40.80 -2 416666..417040 - 124 30061961 ybaJ S0413 - hypothetical protein 389 53.78 0 417586..420735 - 1049 30061962 acrB S0414 - acriflavine resistance protein 390 53.69 0 420758..421951 - 397 30061963 acrA S0415 - acriflavin resistance protein AcrA precursor 391 45.37 -1 422093..422740 + 215 30061964 acrR S0416 - DNA-binding transcriptional repressor AcrR 392 51.92 0 422868..426230 + 1120 30061965 aefA S0417 - potassium efflux protein KefA 393 46.91 -1 426442..426603 - 53 30061966 ybaM S0418 - hypothetical protein 394 59.09 +1 426617..427144 - 175 30061967 priC S0419 - primosomal replication protein N'' 395 52.12 0 427214..427591 + 125 30061968 ybaN S0420 - hypothetical protein 396 53.62 0 427744..428295 + 183 30061969 apt S0421 - adenine phosphoribosyltransferase 397 57.48 +1 428424..430349 + 641 30061970 dnaX S0422 - DNA polymerase III subunits gamma and tau 398 52.42 0 430402..430731 + 109 30061971 ybaB S0423 - hypothetical protein 51.60 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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