IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3387	 55.31	0	3850060..3850473	+	137	30064964	atpC	S3957	-	F0F1 ATP synthase subunit epsilon
3388	 53.10	0	3850824..3852194	+	456	30064965	glmU	S3958	-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
3389	 53.83	0	3852356..3854185	+	609	30064966	glmS	S3959	-	D-fructose-6-phosphate amidotransferase
3390	 54.10	0	3854306..3855634	+	442	30064967	-	S3960	-	IS4 orf
3391	 47.47	-1	3855926..3856498	+	190	30064968	lpfA	S3961	-	putative major fimbrial subunit
3392	 55.30	0	3857264..3858169	-	301	161486400	-	S3963	-	insertion element IS2 transposase InsD
3393	 53.01	0	3858127..3858492	-	121	161486399	-	S3964	-	insertion sequence 2 OrfA protein
3394	 44.18	-1	3860121..3860627	+	168	30064971	-	S3965	-	putative secreted autotransporter toxin
3395	 52.24	0	3860668..3861381	-	237	30064972	-	S3966	-	IS600 orfB
3396	 46.20	-1	3861522..3861824	-	100	30064973	-	S3967	-	IS600 orfA
3397	 42.52	-2	3862079..3862372	+	97	30064974	-	S3968	-	putative transport protein
3398	 52.90	0	3862413..3863603	-	396	161486398	nepI	S3969	-	ribonucleoside transporter
3399	 51.88	0	3863814..3864293	-	159	30064976	yicN	S3970	-	hypothetical protein
3400	 47.20	-1	3864319..3865731	-	470	30064977	yicO	S3971	-	hypothetical protein
3401	 54.67	0	3865828..3867594	+	588	30064978	yicP	S3972	-	cryptic adenine deaminase
3402	 52.73	0	3867640..3869031	-	463	30064979	uhpT	S3973	-	sugar phosphate antiporter
3403	 55.15	0	3869169..3870488	-	439	30064980	uhpC	S3974	-	regulatory protein UhpC
3404	 56.95	+1	3870498..3872000	-	500	30064981	uhpB	S3975	-	sensory histidine kinase UhpB
3405	 59.05	+1	3872000..3872590	-	196	30064982	uhpA	S3976	-	DNA-binding transcriptional activator UhpA
3406	 48.45	0	3872665..3872955	-	96	30064983	ilvN	S3977	-	acetolactate synthase 1 regulatory subunit
3407	 56.07	+1	3872959..3874647	-	562	30064984	ilvB	S3978	-	acetolactate synthase catalytic subunit
3408	 57.58	+1	3874753..3874851	-	32	30064985	ivbL	S3979	-	ilvB operon leader peptide
3409	 57.47	+1	3875818..3876969	+	383	30064986	emrD	S3980	-	multidrug resistance protein D
3410	 53.82	0	3876977..3877474	-	165	30064987	yidF	S3981	-	putative transcriptional regulator
3411	 50.69	0	3877471..3877833	-	120	30064988	yidG	S3982	-	hypothetical protein
3412	 52.01	0	3877823..3878170	-	115	30064989	yidH	S3983	-	hypothetical protein
3413	 47.34	-1	3878279..3878692	+	137	30064990	yidI	S3984	-	hypothetical protein
3414	 52.91	0	3880216..3881931	-	571	30064991	yidK	S3986	-	putative symporter YidK
3415	 43.40	-2	3882098..3882991	+	297	30064992	yidL	S3987	-	putative ARAC-type regulatory protein
3416	 50.62	0	3883802..3884287	-	161	30064993	glvB	S3989	-	arbutin specific enzyme IIB component of PTS
3417	 51.56	0	3885713..3886387	+	224	30064994	yidP	S3991	-	putative transcriptional regulator
3418	 52.95	0	3886426..3888087	-	553	30064995	yidE	S3992	-	hypothetical protein
3419	 48.95	0	3888283..3888711	-	142	30064996	ibpB	S3993	-	heat shock chaperone IbpB
3420	 47.34	-1	3888823..3889236	-	137	30064997	ibpA	S3994	-	heat shock protein IbpA
3421	 54.05	0	3889541..3889873	+	110	161486397	yidQ	S3995	-	hypothetical protein
3422	 53.65	0	3889875..3891149	-	424	30064999	yidR	S3996	-	hypothetical protein
3423	 51.59	0	3891214..3892314	+	366	30065000	yidS	S3997	-	putative oxidoreductase
3424	 53.06	0	3892275..3893612	-	445	30065001	dgoT	S3998	-	D-galactonate transport protein
3425	 54.61	0	3895433..3896311	-	292	30065002	dgoK	S4000	-	2-oxo-3-deoxygalactonate kinase
3426	 55.36	0	3896308..3896997	-	229	30065003	yidW	S4002	-	regulator protein for dgo operon
3427	 51.17	0	3897977..3898789	-	270	30065005	yidA	S4004	-	sugar phosphatase
3428	 51.13	0	3898903..3899301	-	132	30065006	yidB	S4005	-	hypothetical protein
3429	 54.74	0	3899541..3901955	-	804	30065007	gyrB	S4006	-	DNA gyrase subunit B
3430	 54.28	0	3901984..3903057	-	357	30065008	recF	S4007	-	recombination protein F
3431	 54.13	0	3903057..3904157	-	366	30065009	dnaN	S4008	-	DNA polymerase III subunit beta
3432	 53.63	0	3904162..3905565	-	467	30065010	dnaA	S4009	-	chromosomal replication initiation protein
3433	 51.77	0	3906172..3906312	+	46	30065011	rpmH	S4010	-	50S ribosomal protein L34
3434	 56.11	+1	3906329..3906688	+	119	30065012	rnpA	S4011	-	ribonuclease P
3435	 53.49	0	3906912..3908558	+	548	30065013	yidC	S4012	-	putative inner membrane protein translocase component YidC
3436	 56.63	+1	3908664..3910028	+	454	30065014	trmE	S4013	-	tRNA modification GTPase TrmE
3437	 52.98	0	3910242..3910745	-	167	30065015	-	S4014	-	IS1 orfB
3438	 52.90	0	3910664..3910939	-	91	30065016	-	S4015	-	IS1 orfA
3439	 36.00	-2	3911046..3911120	+	24	30065017	tnaL	S4016	-	tryptophanase leader peptide
3440	 50.35	0	3911341..3912756	+	471	30065018	tnaA	S4017	-	tryptophanase
3441	 46.63	-1	3912847..3914094	+	415	30065019	tnaB	S4018	-	tryptophan permease TnaB
3442	 52.98	0	3914226..3915401	+	391	30065020	yidY	S4019	-	multidrug efflux system protein MdtL
3443	 52.24	0	3916068..3916781	-	237	30065021	-	S4021	-	IS600 orfB
3444	 46.20	-1	3916922..3917224	-	100	30065022	-	S4022	-	IS600 orfA
3445	 52.13	0	3917759..3918508	+	249	30065023	yieE	S4024	-	hypothetical protein
3446	 53.09	0	3918530..3919096	+	188	30065024	yieF	S4025	-	hypothetical protein
3447	 52.47	0	3919150..3920487	-	445	30065025	yieG	S4026	-	putative membrane / transport protein
3448	 48.55	0	3920652..3921308	+	218	30065026	yieH	S4027	-	6-phosphogluconate phosphatase
3449	 44.09	-1	3921375..3921848	+	157	30065027	yieI	S4028	-	putative inner membrane protein
3450	 50.07	0	3922016..3922690	+	224	30065028	-	S4029	-	ISSfl3 orfA
3451	 54.70	0	3922687..3923037	+	116	30065029	-	S4030	-	ISSfl3 orfB
3452	 52.37	0	3923034..3924635	+	533	30065030	-	S4031	-	ISSfl3 orfC
3453	 49.52	0	3925288..3926010	-	240	30065031	yieK	S4033	-	putative 6-phosphogluconolactonase
3454	 50.34	0	3926012..3927187	-	391	30065032	yieL	S4034	-	putative xylanase
3455	 45.44	-1	3927214..3928791	-	525	30065033	yieC	S4035	-	putative receptor protein
3456	 52.78	0	3929306..3929809	-	167	30065034	-	S4036	-	IS1 orfB
3457	 52.90	0	3929728..3930003	-	91	30065035	-	S4037	-	IS1 orfA
3458	 49.90	0	3930037..3931086	-	349	30065036	bglB	S4038	-	phospho-beta-glucosidase B cryptic
3459	 51.38	0	3931105..3932982	-	625	30065037	bglF	S4039	-	beta-glucoside-specific PTS system components IIABC
3460	 42.58	-2	3933116..3933937	-	273	30065038	bglG	S4040	-	transcriptional antiterminator BglG
3461	 52.20	0	3934224..3934949	-	241	30065039	phoU	S4041	-	transcriptional regulator PhoU
3462	 52.84	0	3934964..3935737	-	257	30065040	pstB	S4042	-	phosphate transporter subunit
3463	 56.90	+1	3935829..3936719	-	296	30065041	pstA	S4043	-	phosphate transporter permease subunit
3464	 55.04	0	3936767..3937678	-	303	30065042	pstC	S4044	-	phosphate transporter permease subunit
3465	 51.59	0	3937765..3938805	-	346	30065043	pstS	S4045	-	phosphate transporter subunit
3466	 53.26	0	3940059..3940334	+	91	30065044	-	S4046	-	IS1 orfA
3467	 47.01	-1	3940913..3943435	-	840	30065045	lpfC	S4048	-	putative long polar fimbriae
3468	 52.73	0	3943581..3943946	+	121	161486396	-	S4049	-	insertion sequence 2 OrfA protein
3469	 55.30	0	3943904..3944809	+	301	161486395	-	S4050	-	insertion element IS2 transposase InsD
3470	 52.64	0	3946459..3948654	-	731	30065048	iutA	S4052	-	putative ferric siderophore receptor
3471	 46.56	-1	3948660..3949997	-	445	30065049	iucD	S4053	-	lysine:N6-hydroxylase
3472	 54.56	0	3949994..3951736	-	580	30065050	iucC	S4054	-	siderophore biosynthesis protein
3473	 56.43	+1	3951736..3952683	-	315	30065051	iucB	S4055	-	siderophore biosynthesis protein
3474	 53.59	0	3952684..3954465	-	593	30065052	iucA	S4056	-	siderophore biosynthesis protein
3475	 56.95	+1	3954544..3955737	+	397	30065053	imm	S4057	-	putative membrane transport protein
3476	 41.15	-2	3955687..3956658	-	323	30065054	shiE	S4829	-	hypothetical protein
3477	 52.90	0	3956539..3956814	+	91	30065055	-	S4058	-	IS1 orfA
3478	 52.58	0	3956733..3957236	+	167	30065056	-	S4059	-	IS1 orfB
3479	 40.35	-2	3957757..3958155	-	132	30065057	shiD	S4830	-	colV-immunity protein
3480	 53.01	0	3959474..3959839	+	121	161486394	-	S4060	-	insertion sequence 2 OrfA protein
3481	 55.08	0	3959797..3960702	+	301	161486393	-	S4061	-	insertion element IS2 transposase InsD
3482	 54.13	0	3961705..3962031	+	108	30065060	-	S4062	-	IS629 orfA
3483	 54.63	0	3962267..3962914	+	215	30065061	-	S4063	-	IS629 orfB
3484	 33.91	-2	3962995..3963513	-	172	30065062	shiC	S4831	-	hypothetical protein
3485	 52.67	0	3963698..3963997	+	99	30065063	-	S4064	-	IS3 orfA
3486	 58.02	+1	3963994..3964386	+	130	30065064	-	S4832	-	IS3 orfB
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.