version 1.0
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354 4061 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3341 53.76 0 3792207..3793469 - 420 30064918 wecC S3899 - UDP-N-acetyl-D-mannosamine dehydrogenase 3342 52.69 0 3793466..3794638 - 390 30064919 wecB S3900 - UDP-N-acetyl glucosamine-2-epimerase 3343 52.44 0 3794652..3795698 - 348 30064920 wzzE S3901 - lipopolysaccharide biosynthesis protein WzzE 3344 49.28 0 3795710..3796813 - 367 30064921 rfe S3902 - UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase 3345 50.24 0 3797053..3798312 - 419 30064922 rho S3903 - transcription termination factor Rho 3346 49.02 0 3798397..3798498 - 33 30064923 rhoL S3904 - putative Rho operon leader peptide 3347 50.00 0 3798639..3799022 - 127 30064924 trxA S3905 - thioredoxin 3348 52.45 0 3799099..3800364 + 421 30064925 rhlB S3906 - ATP-dependent RNA helicase RhlB 3349 53.54 0 3800498..3801982 + 494 30064926 gppA S3907 - guanosine pentaphosphate phosphohydrolase 3350 53.56 0 3802029..3804050 - 673 30064927 rep S3908 - ATP-dependent DNA helicase Rep 3351 51.06 0 3804137..3804418 + 93 30064928 ppiC S3909 - peptidyl-prolyl cis-trans isomerase C (rotamase C) 3352 53.52 0 3804464..3805939 - 491 30064929 ilvC S3910 - ketol-acid reductoisomerase 3353 57.58 +1 3806089..3806979 + 296 30064930 ilvY S3911 - DNA-binding transcriptional regulator IlvY 3354 58.64 +1 3806976..3808520 - 514 30064931 ilvA S3912 - threonine dehydratase 3355 56.46 +1 3808523..3810373 - 616 30064932 ilvD S3913 - dihydroxy-acid dehydratase 3356 54.41 0 3810438..3811367 - 309 30064933 ilvE S3914 - branched-chain amino acid aminotransferase 3357 49.43 0 3811387..3811647 - 86 30064934 ilvM S3915 - acetolactate synthase 2 regulatory subunit 3358 54.58 0 3811647..3813293 - 548 30064935 ilvG S3917 - acetolactate synthase 2 catalytic subunit 3359 53.54 0 3813432..3813530 - 32 30064936 ilvL S3918 - ilvG operon leader peptide 3360 48.08 0 3815386..3815724 - 112 30064937 yifE S3920 - hypothetical protein 3361 48.69 0 3815843..3816682 + 279 30064938 yifA S3921 - transcriptional regulator HdfR 3362 49.54 0 3822630..3823178 + 182 30064939 yieP S3929 - hypothetical protein 3363 49.36 0 3823225..3824628 + 467 30064940 yieO S3930 - putative transport protein 3364 50.41 0 3824594..3825577 - 327 30064941 rbsR S3931 - transcriptional repressor RbsR 3365 52.28 0 3825590..3826534 - 314 30064942 rbsK S3932 - ribokinase 3366 53.00 0 3827560..3828525 - 321 30064943 rbsC S3934 - ribose ABC transporter permease protein 3367 52.98 0 3829707..3830210 - 167 30064944 - S3936 - IS1 orfB 3368 52.90 0 3830129..3830404 - 91 30064945 - S3937 - IS1 orfA 3369 46.90 -1 3830819..3831238 - 139 30064946 rbsD S3939 - D-ribose pyranase 3370 51.47 0 3831405..3833273 - 622 30064947 trkD S3940 - potassium transport protein Kup 3371 54.10 0 3833431..3834759 - 442 30064948 - S3941 - IS4 orf 3372 49.24 0 3834909..3836429 + 506 30064949 yieN S3942 - regulatory ATPase RavA 3373 52.55 0 3836423..3837874 + 483 161486402 yieM S3943 - hypothetical protein 3374 56.50 +1 3837879..3838871 - 330 30064951 asnA S3944 - asparagine synthetase AsnA 3375 49.24 0 3839023..3839481 + 152 30064952 asnC S3945 - DNA-binding transcriptional regulator AsnC 3376 49.77 0 3839571..3840014 + 147 30064953 mioC S3946 - flavodoxin 3377 54.50 0 3840393..3842282 + 629 30064954 gidA S3947 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 3378 48.56 0 3842346..3842969 + 207 30064955 gidB S3948 - glucose-inhibited division protein B 3379 51.97 0 3843586..3843966 + 126 161486401 atpI S3949 - F0F1 ATP synthase subunit I 3380 49.88 0 3843975..3844790 + 271 30064957 atpB S3950 - F0F1 ATP synthase subunit A 3381 54.17 0 3844837..3845076 + 79 30064958 atpE S3951 - F0F1 ATP synthase subunit C 3382 52.65 0 3845138..3845608 + 156 30064959 atpF S3952 - F0F1 ATP synthase subunit B 3383 51.31 0 3845623..3846156 + 177 30064960 atpH S3953 - F0F1 ATP synthase subunit delta 3384 53.37 0 3846169..3847710 + 513 30064961 atpA S3954 - F0F1 ATP synthase subunit alpha 3385 53.47 0 3847761..3848624 + 287 30064962 atpG S3955 - F0F1 ATP synthase subunit gamma 3386 54.95 0 3848651..3850033 + 460 30064963 atpD S3956 - F0F1 ATP synthase subunit beta 3387 55.31 0 3850060..3850473 + 137 30064964 atpC S3957 - F0F1 ATP synthase subunit epsilon 3388 53.10 0 3850824..3852194 + 456 30064965 glmU S3958 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 3389 53.83 0 3852356..3854185 + 609 30064966 glmS S3959 - D-fructose-6-phosphate amidotransferase 3390 54.10 0 3854306..3855634 + 442 30064967 - S3960 - IS4 orf 3391 47.47 -1 3855926..3856498 + 190 30064968 lpfA S3961 - putative major fimbrial subunit 3392 55.30 0 3857264..3858169 - 301 161486400 - S3963 - insertion element IS2 transposase InsD 3393 53.01 0 3858127..3858492 - 121 161486399 - S3964 - insertion sequence 2 OrfA protein 3394 44.18 -1 3860121..3860627 + 168 30064971 - S3965 - putative secreted autotransporter toxin 3395 52.24 0 3860668..3861381 - 237 30064972 - S3966 - IS600 orfB 3396 46.20 -1 3861522..3861824 - 100 30064973 - S3967 - IS600 orfA 3397 42.52 -2 3862079..3862372 + 97 30064974 - S3968 - putative transport protein 3398 52.90 0 3862413..3863603 - 396 161486398 nepI S3969 - ribonucleoside transporter 3399 51.88 0 3863814..3864293 - 159 30064976 yicN S3970 - hypothetical protein 3400 47.20 -1 3864319..3865731 - 470 30064977 yicO S3971 - hypothetical protein 3401 54.67 0 3865828..3867594 + 588 30064978 yicP S3972 - cryptic adenine deaminase 3402 52.73 0 3867640..3869031 - 463 30064979 uhpT S3973 - sugar phosphate antiporter 3403 55.15 0 3869169..3870488 - 439 30064980 uhpC S3974 - regulatory protein UhpC 3404 56.95 +1 3870498..3872000 - 500 30064981 uhpB S3975 - sensory histidine kinase UhpB 3405 59.05 +1 3872000..3872590 - 196 30064982 uhpA S3976 - DNA-binding transcriptional activator UhpA 3406 48.45 0 3872665..3872955 - 96 30064983 ilvN S3977 - acetolactate synthase 1 regulatory subunit 3407 56.07 +1 3872959..3874647 - 562 30064984 ilvB S3978 - acetolactate synthase catalytic subunit 3408 57.58 +1 3874753..3874851 - 32 30064985 ivbL S3979 - ilvB operon leader peptide 3409 57.47 +1 3875818..3876969 + 383 30064986 emrD S3980 - multidrug resistance protein D 3410 53.82 0 3876977..3877474 - 165 30064987 yidF S3981 - putative transcriptional regulator 3411 50.69 0 3877471..3877833 - 120 30064988 yidG S3982 - hypothetical protein 3412 52.01 0 3877823..3878170 - 115 30064989 yidH S3983 - hypothetical protein 3413 47.34 -1 3878279..3878692 + 137 30064990 yidI S3984 - hypothetical protein 3414 52.91 0 3880216..3881931 - 571 30064991 yidK S3986 - putative symporter YidK 3415 43.40 -2 3882098..3882991 + 297 30064992 yidL S3987 - putative ARAC-type regulatory protein 3416 50.62 0 3883802..3884287 - 161 30064993 glvB S3989 - arbutin specific enzyme IIB component of PTS 3417 51.56 0 3885713..3886387 + 224 30064994 yidP S3991 - putative transcriptional regulator 3418 52.95 0 3886426..3888087 - 553 30064995 yidE S3992 - hypothetical protein 3419 48.95 0 3888283..3888711 - 142 30064996 ibpB S3993 - heat shock chaperone IbpB 3420 47.34 -1 3888823..3889236 - 137 30064997 ibpA S3994 - heat shock protein IbpA 3421 54.05 0 3889541..3889873 + 110 161486397 yidQ S3995 - hypothetical protein 3422 53.65 0 3889875..3891149 - 424 30064999 yidR S3996 - hypothetical protein 3423 51.59 0 3891214..3892314 + 366 30065000 yidS S3997 - putative oxidoreductase 3424 53.06 0 3892275..3893612 - 445 30065001 dgoT S3998 - D-galactonate transport protein 3425 54.61 0 3895433..3896311 - 292 30065002 dgoK S4000 - 2-oxo-3-deoxygalactonate kinase 3426 55.36 0 3896308..3896997 - 229 30065003 yidW S4002 - regulator protein for dgo operon 3427 51.17 0 3897977..3898789 - 270 30065005 yidA S4004 - sugar phosphatase 3428 51.13 0 3898903..3899301 - 132 30065006 yidB S4005 - hypothetical protein 3429 54.74 0 3899541..3901955 - 804 30065007 gyrB S4006 - DNA gyrase subunit B 3430 54.28 0 3901984..3903057 - 357 30065008 recF S4007 - recombination protein F 3431 54.13 0 3903057..3904157 - 366 30065009 dnaN S4008 - DNA polymerase III subunit beta 3432 53.63 0 3904162..3905565 - 467 30065010 dnaA S4009 - chromosomal replication initiation protein 3433 51.77 0 3906172..3906312 + 46 30065011 rpmH S4010 - 50S ribosomal protein L34 3434 56.11 +1 3906329..3906688 + 119 30065012 rnpA S4011 - ribonuclease P 3435 53.49 0 3906912..3908558 + 548 30065013 yidC S4012 - putative inner membrane protein translocase component YidC 3436 56.63 +1 3908664..3910028 + 454 30065014 trmE S4013 - tRNA modification GTPase TrmE 3437 52.98 0 3910242..3910745 - 167 30065015 - S4014 - IS1 orfB 3438 52.90 0 3910664..3910939 - 91 30065016 - S4015 - IS1 orfA 3439 36.00 -2 3911046..3911120 + 24 30065017 tnaL S4016 - tryptophanase leader peptide 3440 50.35 0 3911341..3912756 + 471 30065018 tnaA S4017 - tryptophanase 51.60 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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