IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3316	 54.07	0	3764422..3765318	-	298	30064893	xerC	S3867	-	site-specific tyrosine recombinase XerC
3317	 55.93	+1	3765315..3766022	-	235	30064894	yigA	S3868	-	hypothetical protein
3318	 55.15	0	3766019..3766843	-	274	161486405	dapF	S3869	-	diaminopimelate epimerase
3319	 52.45	0	3766880..3767083	-	67	30064896	yifL	S3870	-	putative outer membrane lipoprotein
3320	 50.48	0	3767386..3768423	+	345	30064897	-	S3871	-	hypothetical protein
3321	 53.17	0	3769659..3770162	-	167	30064898	-	S3874	-	IS1 orfB
3322	 53.26	0	3770081..3770356	-	91	30064899	-	S3875	-	IS1 orfA
3323	 53.58	0	3770885..3771205	+	106	30064900	cyaY	S3876	-	frataxin-like protein
3324	 52.30	0	3771245..3773791	-	848	30064901	cyaA	S3878	-	adenylate cyclase
3325	 55.94	+1	3774178..3775119	+	313	30064902	hemC	S3879	-	porphobilinogen deaminase
3326	 53.04	0	3775116..3775856	+	246	30064903	hemD	S3880	-	uroporphyrinogen-III synthase
3327	 53.42	0	3775878..3777077	+	399	30064904	hemX	S3881	-	putative uroporphyrinogen III C-methyltransferase
3328	 54.30	0	3777080..3778276	+	398	30064905	hemY	S3882	-	putative protoheme IX biogenesis protein
3329	 53.01	0	3779138..3779503	+	121	161486404	-	S3883	-	insertion sequence 2 OrfA protein
3330	 55.19	0	3779461..3780366	+	301	161486403	-	S3884	-	insertion element IS2 transposase InsD
3331	 51.21	0	3780536..3781771	-	411	30064908	aslB	S3885	-	putative arylsulfatase regulator
3332	 53.25	0	3782457..3783842	-	461	30064909	yifK	S3890	-	putative transport protein YifK
3333	 53.31	0	3784033..3784773	-	246	30064910	wecG	S3891	-	putative UDP-N-acetyl-D-mannosaminuronic acid transferase
3334	 51.88	0	3784776..3786128	-	450	30064911	wecF	S3892	-	putative entero common antigen polymerase
3335	 52.41	0	3786125..3787204	-	359	30064912	yifM	S3893	-	4-alpha-L-fucosyltransferase
3336	 53.24	0	3787201..3788451	-	416	30064913	wzxE	S3894	-	putative cytochrome
3337	 54.47	0	3788453..3789583	-	376	30064914	wecE	S3895	-	TDP-4-oxo-6-deoxy-D-glucose transaminase
3338	 54.76	0	3789588..3790133	-	181	30064915	wecD	S3896	-	TDP-fucosamine acetyltransferase
3339	 54.99	0	3790240..3791121	-	293	30064916	rffH	S3897	-	glucose-1-phosphate thymidylyltransferase
3340	 53.56	0	3791140..3792207	-	355	30064917	rffG	S3898	-	dTDP-glucose 4,6-dehydratase
3341	 53.76	0	3792207..3793469	-	420	30064918	wecC	S3899	-	UDP-N-acetyl-D-mannosamine dehydrogenase
3342	 52.69	0	3793466..3794638	-	390	30064919	wecB	S3900	-	UDP-N-acetyl glucosamine-2-epimerase
3343	 52.44	0	3794652..3795698	-	348	30064920	wzzE	S3901	-	lipopolysaccharide biosynthesis protein WzzE
3344	 49.28	0	3795710..3796813	-	367	30064921	rfe	S3902	-	UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase
3345	 50.24	0	3797053..3798312	-	419	30064922	rho	S3903	-	transcription termination factor Rho
3346	 49.02	0	3798397..3798498	-	33	30064923	rhoL	S3904	-	putative Rho operon leader peptide
3347	 50.00	0	3798639..3799022	-	127	30064924	trxA	S3905	-	thioredoxin
3348	 52.45	0	3799099..3800364	+	421	30064925	rhlB	S3906	-	ATP-dependent RNA helicase RhlB
3349	 53.54	0	3800498..3801982	+	494	30064926	gppA	S3907	-	guanosine pentaphosphate phosphohydrolase
3350	 53.56	0	3802029..3804050	-	673	30064927	rep	S3908	-	ATP-dependent DNA helicase Rep
3351	 51.06	0	3804137..3804418	+	93	30064928	ppiC	S3909	-	peptidyl-prolyl cis-trans isomerase C (rotamase C)
3352	 53.52	0	3804464..3805939	-	491	30064929	ilvC	S3910	-	ketol-acid reductoisomerase
3353	 57.58	+1	3806089..3806979	+	296	30064930	ilvY	S3911	-	DNA-binding transcriptional regulator IlvY
3354	 58.64	+1	3806976..3808520	-	514	30064931	ilvA	S3912	-	threonine dehydratase
3355	 56.46	+1	3808523..3810373	-	616	30064932	ilvD	S3913	-	dihydroxy-acid dehydratase
3356	 54.41	0	3810438..3811367	-	309	30064933	ilvE	S3914	-	branched-chain amino acid aminotransferase
3357	 49.43	0	3811387..3811647	-	86	30064934	ilvM	S3915	-	acetolactate synthase 2 regulatory subunit
3358	 54.58	0	3811647..3813293	-	548	30064935	ilvG	S3917	-	acetolactate synthase 2 catalytic subunit
3359	 53.54	0	3813432..3813530	-	32	30064936	ilvL	S3918	-	ilvG operon leader peptide
3360	 48.08	0	3815386..3815724	-	112	30064937	yifE	S3920	-	hypothetical protein
3361	 48.69	0	3815843..3816682	+	279	30064938	yifA	S3921	-	transcriptional regulator HdfR
3362	 49.54	0	3822630..3823178	+	182	30064939	yieP	S3929	-	hypothetical protein
3363	 49.36	0	3823225..3824628	+	467	30064940	yieO	S3930	-	putative transport protein
3364	 50.41	0	3824594..3825577	-	327	30064941	rbsR	S3931	-	transcriptional repressor RbsR
3365	 52.28	0	3825590..3826534	-	314	30064942	rbsK	S3932	-	ribokinase
3366	 53.00	0	3827560..3828525	-	321	30064943	rbsC	S3934	-	ribose ABC transporter permease protein
3367	 52.98	0	3829707..3830210	-	167	30064944	-	S3936	-	IS1 orfB
3368	 52.90	0	3830129..3830404	-	91	30064945	-	S3937	-	IS1 orfA
3369	 46.90	-1	3830819..3831238	-	139	30064946	rbsD	S3939	-	D-ribose pyranase
3370	 51.47	0	3831405..3833273	-	622	30064947	trkD	S3940	-	potassium transport protein Kup
3371	 54.10	0	3833431..3834759	-	442	30064948	-	S3941	-	IS4 orf
3372	 49.24	0	3834909..3836429	+	506	30064949	yieN	S3942	-	regulatory ATPase RavA
3373	 52.55	0	3836423..3837874	+	483	161486402	yieM	S3943	-	hypothetical protein
3374	 56.50	+1	3837879..3838871	-	330	30064951	asnA	S3944	-	asparagine synthetase AsnA
3375	 49.24	0	3839023..3839481	+	152	30064952	asnC	S3945	-	DNA-binding transcriptional regulator AsnC
3376	 49.77	0	3839571..3840014	+	147	30064953	mioC	S3946	-	flavodoxin
3377	 54.50	0	3840393..3842282	+	629	30064954	gidA	S3947	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
3378	 48.56	0	3842346..3842969	+	207	30064955	gidB	S3948	-	glucose-inhibited division protein B
3379	 51.97	0	3843586..3843966	+	126	161486401	atpI	S3949	-	F0F1 ATP synthase subunit I
3380	 49.88	0	3843975..3844790	+	271	30064957	atpB	S3950	-	F0F1 ATP synthase subunit A
3381	 54.17	0	3844837..3845076	+	79	30064958	atpE	S3951	-	F0F1 ATP synthase subunit C
3382	 52.65	0	3845138..3845608	+	156	30064959	atpF	S3952	-	F0F1 ATP synthase subunit B
3383	 51.31	0	3845623..3846156	+	177	30064960	atpH	S3953	-	F0F1 ATP synthase subunit delta
3384	 53.37	0	3846169..3847710	+	513	30064961	atpA	S3954	-	F0F1 ATP synthase subunit alpha
3385	 53.47	0	3847761..3848624	+	287	30064962	atpG	S3955	-	F0F1 ATP synthase subunit gamma
3386	 54.95	0	3848651..3850033	+	460	30064963	atpD	S3956	-	F0F1 ATP synthase subunit beta
3387	 55.31	0	3850060..3850473	+	137	30064964	atpC	S3957	-	F0F1 ATP synthase subunit epsilon
3388	 53.10	0	3850824..3852194	+	456	30064965	glmU	S3958	-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
3389	 53.83	0	3852356..3854185	+	609	30064966	glmS	S3959	-	D-fructose-6-phosphate amidotransferase
3390	 54.10	0	3854306..3855634	+	442	30064967	-	S3960	-	IS4 orf
3391	 47.47	-1	3855926..3856498	+	190	30064968	lpfA	S3961	-	putative major fimbrial subunit
3392	 55.30	0	3857264..3858169	-	301	161486400	-	S3963	-	insertion element IS2 transposase InsD
3393	 53.01	0	3858127..3858492	-	121	161486399	-	S3964	-	insertion sequence 2 OrfA protein
3394	 44.18	-1	3860121..3860627	+	168	30064971	-	S3965	-	putative secreted autotransporter toxin
3395	 52.24	0	3860668..3861381	-	237	30064972	-	S3966	-	IS600 orfB
3396	 46.20	-1	3861522..3861824	-	100	30064973	-	S3967	-	IS600 orfA
3397	 42.52	-2	3862079..3862372	+	97	30064974	-	S3968	-	putative transport protein
3398	 52.90	0	3862413..3863603	-	396	161486398	nepI	S3969	-	ribonucleoside transporter
3399	 51.88	0	3863814..3864293	-	159	30064976	yicN	S3970	-	hypothetical protein
3400	 47.20	-1	3864319..3865731	-	470	30064977	yicO	S3971	-	hypothetical protein
3401	 54.67	0	3865828..3867594	+	588	30064978	yicP	S3972	-	cryptic adenine deaminase
3402	 52.73	0	3867640..3869031	-	463	30064979	uhpT	S3973	-	sugar phosphate antiporter
3403	 55.15	0	3869169..3870488	-	439	30064980	uhpC	S3974	-	regulatory protein UhpC
3404	 56.95	+1	3870498..3872000	-	500	30064981	uhpB	S3975	-	sensory histidine kinase UhpB
3405	 59.05	+1	3872000..3872590	-	196	30064982	uhpA	S3976	-	DNA-binding transcriptional activator UhpA
3406	 48.45	0	3872665..3872955	-	96	30064983	ilvN	S3977	-	acetolactate synthase 1 regulatory subunit
3407	 56.07	+1	3872959..3874647	-	562	30064984	ilvB	S3978	-	acetolactate synthase catalytic subunit
3408	 57.58	+1	3874753..3874851	-	32	30064985	ivbL	S3979	-	ilvB operon leader peptide
3409	 57.47	+1	3875818..3876969	+	383	30064986	emrD	S3980	-	multidrug resistance protein D
3410	 53.82	0	3876977..3877474	-	165	30064987	yidF	S3981	-	putative transcriptional regulator
3411	 50.69	0	3877471..3877833	-	120	30064988	yidG	S3982	-	hypothetical protein
3412	 52.01	0	3877823..3878170	-	115	30064989	yidH	S3983	-	hypothetical protein
3413	 47.34	-1	3878279..3878692	+	137	30064990	yidI	S3984	-	hypothetical protein
3414	 52.91	0	3880216..3881931	-	571	30064991	yidK	S3986	-	putative symporter YidK
3415	 43.40	-2	3882098..3882991	+	297	30064992	yidL	S3987	-	putative ARAC-type regulatory protein
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.