version 1.0
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354 4061 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3312 54.18 0 3759460..3760788 - 442 30064889 - S3863 - IS4 orf 3313 45.33 -1 3761014..3761313 + 99 30064890 - S3864 - hypothetical protein 3314 57.47 +1 3761460..3763622 - 720 30064891 uvrD S3865 - DNA-dependent helicase II 3315 55.09 0 3763706..3764422 - 238 30064892 yigB S3866 - flavin mononucleotide phosphatase 3316 54.07 0 3764422..3765318 - 298 30064893 xerC S3867 - site-specific tyrosine recombinase XerC 3317 55.93 +1 3765315..3766022 - 235 30064894 yigA S3868 - hypothetical protein 3318 55.15 0 3766019..3766843 - 274 161486405 dapF S3869 - diaminopimelate epimerase 3319 52.45 0 3766880..3767083 - 67 30064896 yifL S3870 - putative outer membrane lipoprotein 3320 50.48 0 3767386..3768423 + 345 30064897 - S3871 - hypothetical protein 3321 53.17 0 3769659..3770162 - 167 30064898 - S3874 - IS1 orfB 3322 53.26 0 3770081..3770356 - 91 30064899 - S3875 - IS1 orfA 3323 53.58 0 3770885..3771205 + 106 30064900 cyaY S3876 - frataxin-like protein 3324 52.30 0 3771245..3773791 - 848 30064901 cyaA S3878 - adenylate cyclase 3325 55.94 +1 3774178..3775119 + 313 30064902 hemC S3879 - porphobilinogen deaminase 3326 53.04 0 3775116..3775856 + 246 30064903 hemD S3880 - uroporphyrinogen-III synthase 3327 53.42 0 3775878..3777077 + 399 30064904 hemX S3881 - putative uroporphyrinogen III C-methyltransferase 3328 54.30 0 3777080..3778276 + 398 30064905 hemY S3882 - putative protoheme IX biogenesis protein 3329 53.01 0 3779138..3779503 + 121 161486404 - S3883 - insertion sequence 2 OrfA protein 3330 55.19 0 3779461..3780366 + 301 161486403 - S3884 - insertion element IS2 transposase InsD 3331 51.21 0 3780536..3781771 - 411 30064908 aslB S3885 - putative arylsulfatase regulator 3332 53.25 0 3782457..3783842 - 461 30064909 yifK S3890 - putative transport protein YifK 3333 53.31 0 3784033..3784773 - 246 30064910 wecG S3891 - putative UDP-N-acetyl-D-mannosaminuronic acid transferase 3334 51.88 0 3784776..3786128 - 450 30064911 wecF S3892 - putative entero common antigen polymerase 3335 52.41 0 3786125..3787204 - 359 30064912 yifM S3893 - 4-alpha-L-fucosyltransferase 3336 53.24 0 3787201..3788451 - 416 30064913 wzxE S3894 - putative cytochrome 3337 54.47 0 3788453..3789583 - 376 30064914 wecE S3895 - TDP-4-oxo-6-deoxy-D-glucose transaminase 3338 54.76 0 3789588..3790133 - 181 30064915 wecD S3896 - TDP-fucosamine acetyltransferase 3339 54.99 0 3790240..3791121 - 293 30064916 rffH S3897 - glucose-1-phosphate thymidylyltransferase 3340 53.56 0 3791140..3792207 - 355 30064917 rffG S3898 - dTDP-glucose 4,6-dehydratase 3341 53.76 0 3792207..3793469 - 420 30064918 wecC S3899 - UDP-N-acetyl-D-mannosamine dehydrogenase 3342 52.69 0 3793466..3794638 - 390 30064919 wecB S3900 - UDP-N-acetyl glucosamine-2-epimerase 3343 52.44 0 3794652..3795698 - 348 30064920 wzzE S3901 - lipopolysaccharide biosynthesis protein WzzE 3344 49.28 0 3795710..3796813 - 367 30064921 rfe S3902 - UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase 3345 50.24 0 3797053..3798312 - 419 30064922 rho S3903 - transcription termination factor Rho 3346 49.02 0 3798397..3798498 - 33 30064923 rhoL S3904 - putative Rho operon leader peptide 3347 50.00 0 3798639..3799022 - 127 30064924 trxA S3905 - thioredoxin 3348 52.45 0 3799099..3800364 + 421 30064925 rhlB S3906 - ATP-dependent RNA helicase RhlB 3349 53.54 0 3800498..3801982 + 494 30064926 gppA S3907 - guanosine pentaphosphate phosphohydrolase 3350 53.56 0 3802029..3804050 - 673 30064927 rep S3908 - ATP-dependent DNA helicase Rep 3351 51.06 0 3804137..3804418 + 93 30064928 ppiC S3909 - peptidyl-prolyl cis-trans isomerase C (rotamase C) 3352 53.52 0 3804464..3805939 - 491 30064929 ilvC S3910 - ketol-acid reductoisomerase 3353 57.58 +1 3806089..3806979 + 296 30064930 ilvY S3911 - DNA-binding transcriptional regulator IlvY 3354 58.64 +1 3806976..3808520 - 514 30064931 ilvA S3912 - threonine dehydratase 3355 56.46 +1 3808523..3810373 - 616 30064932 ilvD S3913 - dihydroxy-acid dehydratase 3356 54.41 0 3810438..3811367 - 309 30064933 ilvE S3914 - branched-chain amino acid aminotransferase 3357 49.43 0 3811387..3811647 - 86 30064934 ilvM S3915 - acetolactate synthase 2 regulatory subunit 3358 54.58 0 3811647..3813293 - 548 30064935 ilvG S3917 - acetolactate synthase 2 catalytic subunit 3359 53.54 0 3813432..3813530 - 32 30064936 ilvL S3918 - ilvG operon leader peptide 3360 48.08 0 3815386..3815724 - 112 30064937 yifE S3920 - hypothetical protein 3361 48.69 0 3815843..3816682 + 279 30064938 yifA S3921 - transcriptional regulator HdfR 3362 49.54 0 3822630..3823178 + 182 30064939 yieP S3929 - hypothetical protein 3363 49.36 0 3823225..3824628 + 467 30064940 yieO S3930 - putative transport protein 3364 50.41 0 3824594..3825577 - 327 30064941 rbsR S3931 - transcriptional repressor RbsR 3365 52.28 0 3825590..3826534 - 314 30064942 rbsK S3932 - ribokinase 3366 53.00 0 3827560..3828525 - 321 30064943 rbsC S3934 - ribose ABC transporter permease protein 3367 52.98 0 3829707..3830210 - 167 30064944 - S3936 - IS1 orfB 3368 52.90 0 3830129..3830404 - 91 30064945 - S3937 - IS1 orfA 3369 46.90 -1 3830819..3831238 - 139 30064946 rbsD S3939 - D-ribose pyranase 3370 51.47 0 3831405..3833273 - 622 30064947 trkD S3940 - potassium transport protein Kup 3371 54.10 0 3833431..3834759 - 442 30064948 - S3941 - IS4 orf 3372 49.24 0 3834909..3836429 + 506 30064949 yieN S3942 - regulatory ATPase RavA 3373 52.55 0 3836423..3837874 + 483 161486402 yieM S3943 - hypothetical protein 3374 56.50 +1 3837879..3838871 - 330 30064951 asnA S3944 - asparagine synthetase AsnA 3375 49.24 0 3839023..3839481 + 152 30064952 asnC S3945 - DNA-binding transcriptional regulator AsnC 3376 49.77 0 3839571..3840014 + 147 30064953 mioC S3946 - flavodoxin 3377 54.50 0 3840393..3842282 + 629 30064954 gidA S3947 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 3378 48.56 0 3842346..3842969 + 207 30064955 gidB S3948 - glucose-inhibited division protein B 3379 51.97 0 3843586..3843966 + 126 161486401 atpI S3949 - F0F1 ATP synthase subunit I 3380 49.88 0 3843975..3844790 + 271 30064957 atpB S3950 - F0F1 ATP synthase subunit A 3381 54.17 0 3844837..3845076 + 79 30064958 atpE S3951 - F0F1 ATP synthase subunit C 3382 52.65 0 3845138..3845608 + 156 30064959 atpF S3952 - F0F1 ATP synthase subunit B 3383 51.31 0 3845623..3846156 + 177 30064960 atpH S3953 - F0F1 ATP synthase subunit delta 3384 53.37 0 3846169..3847710 + 513 30064961 atpA S3954 - F0F1 ATP synthase subunit alpha 3385 53.47 0 3847761..3848624 + 287 30064962 atpG S3955 - F0F1 ATP synthase subunit gamma 3386 54.95 0 3848651..3850033 + 460 30064963 atpD S3956 - F0F1 ATP synthase subunit beta 3387 55.31 0 3850060..3850473 + 137 30064964 atpC S3957 - F0F1 ATP synthase subunit epsilon 3388 53.10 0 3850824..3852194 + 456 30064965 glmU S3958 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 3389 53.83 0 3852356..3854185 + 609 30064966 glmS S3959 - D-fructose-6-phosphate amidotransferase 3390 54.10 0 3854306..3855634 + 442 30064967 - S3960 - IS4 orf 3391 47.47 -1 3855926..3856498 + 190 30064968 lpfA S3961 - putative major fimbrial subunit 3392 55.30 0 3857264..3858169 - 301 161486400 - S3963 - insertion element IS2 transposase InsD 3393 53.01 0 3858127..3858492 - 121 161486399 - S3964 - insertion sequence 2 OrfA protein 3394 44.18 -1 3860121..3860627 + 168 30064971 - S3965 - putative secreted autotransporter toxin 3395 52.24 0 3860668..3861381 - 237 30064972 - S3966 - IS600 orfB 3396 46.20 -1 3861522..3861824 - 100 30064973 - S3967 - IS600 orfA 3397 42.52 -2 3862079..3862372 + 97 30064974 - S3968 - putative transport protein 3398 52.90 0 3862413..3863603 - 396 161486398 nepI S3969 - ribonucleoside transporter 3399 51.88 0 3863814..3864293 - 159 30064976 yicN S3970 - hypothetical protein 3400 47.20 -1 3864319..3865731 - 470 30064977 yicO S3971 - hypothetical protein 3401 54.67 0 3865828..3867594 + 588 30064978 yicP S3972 - cryptic adenine deaminase 3402 52.73 0 3867640..3869031 - 463 30064979 uhpT S3973 - sugar phosphate antiporter 3403 55.15 0 3869169..3870488 - 439 30064980 uhpC S3974 - regulatory protein UhpC 3404 56.95 +1 3870498..3872000 - 500 30064981 uhpB S3975 - sensory histidine kinase UhpB 3405 59.05 +1 3872000..3872590 - 196 30064982 uhpA S3976 - DNA-binding transcriptional activator UhpA 3406 48.45 0 3872665..3872955 - 96 30064983 ilvN S3977 - acetolactate synthase 1 regulatory subunit 3407 56.07 +1 3872959..3874647 - 562 30064984 ilvB S3978 - acetolactate synthase catalytic subunit 3408 57.58 +1 3874753..3874851 - 32 30064985 ivbL S3979 - ilvB operon leader peptide 3409 57.47 +1 3875818..3876969 + 383 30064986 emrD S3980 - multidrug resistance protein D 3410 53.82 0 3876977..3877474 - 165 30064987 yidF S3981 - putative transcriptional regulator 3411 50.69 0 3877471..3877833 - 120 30064988 yidG S3982 - hypothetical protein 51.60 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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