IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3284	 52.71	0	3732944..3733645	-	233	30064861	fre	S3832	-	FMN reductase
3285	 53.61	0	3733691..3735184	-	497	30064862	yigC	S3833	-	3-octaprenyl-4-hydroxybenzoate decarboxylase
3286	 49.90	0	3735351..3735839	+	162	30064863	rfaH	S3834	-	transcriptional activator RfaH
3287	 54.92	0	3735836..3736618	-	260	30064864	yigW	S3836	-	DNase TatD
3288	 51.35	0	3736660..3737436	-	258	30064865	yigU	S3837	-	TatABCE protein translocation system subunit
3289	 55.43	0	3737439..3737954	-	171	30064866	-	S3838	-	sec-independent translocase
3290	 44.87	-1	3737958..3738269	-	103	30064867	tatA	S3840	-	twin argininte translocase protein A
3291	 50.09	0	3738306..3739946	-	546	30064868	ubiB	S3841	-	putative ubiquinone biosynthesis protein UbiB
3292	 55.61	0	3739943..3740548	-	201	30064869	yigP	S3842	-	hypothetical protein
3293	 51.98	0	3740562..3741317	-	251	30064870	ubiE	S3843	-	ubiquinone/menaquinone biosynthesis methyltransferase
3294	 52.87	0	3741412..3742824	-	470	30064871	yigN	S3844	-	DNA recombination protein RmuC
3295	 53.67	0	3742980..3743741	-	253	30064872	udp	S3845	-	uridine phosphorylase
3296	 54.69	0	3744111..3744419	-	102	30064873	-	S3847	-	hypothetical protein
3297	 55.75	+1	3744856..3747117	-	753	30064874	metE	S3848	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
3298	 56.39	+1	3747353..3748306	+	317	30064875	metR	S3849	-	regulator for metE and metH
3299	 54.89	0	3748194..3749093	-	299	30064876	yigM	S3850	-	hypothetical protein
3300	 51.56	0	3749169..3749969	-	266	30064877	yigL	S3851	-	putative sugar phosphatase
3301	 53.67	0	3749977..3750999	-	340	30064878	pldB	S3852	-	lysophospholipase L2
3302	 50.36	0	3751314..3751730	+	138	30064879	yigK	S3853	-	hypothetical protein
3303	 50.95	0	3751792..3752160	-	122	30064880	yigJ	S3854	-	hypothetical protein
3304	 54.85	0	3752476..3754311	-	611	30064881	recQ	S3855	-	ATP-dependent DNA helicase RecQ
3305	 51.15	0	3754438..3755307	-	289	30064882	pldA	S3856	-	phospholipase A
3306	 53.21	0	3755472..3755939	+	155	161486406	yigI	S3857	-	hypothetical protein
3307	 50.73	0	3755991..3756881	+	296	30064884	rarD	S3858	-	hypothetical protein
3308	 32.85	-2	3756940..3757356	+	138	30064885	yigG	S3859	-	hypothetical protein
3309	 34.12	-2	3757370..3757750	+	126	30064886	yigF	S3860	-	hypothetical protein
3310	 52.68	0	3757791..3758741	-	316	30064887	corA	S3861	-	magnesium/nickel/cobalt transporter CorA
3311	 49.85	0	3759111..3759449	+	112	30064888	yigE	S3862	-	hypothetical protein
3312	 54.18	0	3759460..3760788	-	442	30064889	-	S3863	-	IS4 orf
3313	 45.33	-1	3761014..3761313	+	99	30064890	-	S3864	-	hypothetical protein
3314	 57.47	+1	3761460..3763622	-	720	30064891	uvrD	S3865	-	DNA-dependent helicase II
3315	 55.09	0	3763706..3764422	-	238	30064892	yigB	S3866	-	flavin mononucleotide phosphatase
3316	 54.07	0	3764422..3765318	-	298	30064893	xerC	S3867	-	site-specific tyrosine recombinase XerC
3317	 55.93	+1	3765315..3766022	-	235	30064894	yigA	S3868	-	hypothetical protein
3318	 55.15	0	3766019..3766843	-	274	161486405	dapF	S3869	-	diaminopimelate epimerase
3319	 52.45	0	3766880..3767083	-	67	30064896	yifL	S3870	-	putative outer membrane lipoprotein
3320	 50.48	0	3767386..3768423	+	345	30064897	-	S3871	-	hypothetical protein
3321	 53.17	0	3769659..3770162	-	167	30064898	-	S3874	-	IS1 orfB
3322	 53.26	0	3770081..3770356	-	91	30064899	-	S3875	-	IS1 orfA
3323	 53.58	0	3770885..3771205	+	106	30064900	cyaY	S3876	-	frataxin-like protein
3324	 52.30	0	3771245..3773791	-	848	30064901	cyaA	S3878	-	adenylate cyclase
3325	 55.94	+1	3774178..3775119	+	313	30064902	hemC	S3879	-	porphobilinogen deaminase
3326	 53.04	0	3775116..3775856	+	246	30064903	hemD	S3880	-	uroporphyrinogen-III synthase
3327	 53.42	0	3775878..3777077	+	399	30064904	hemX	S3881	-	putative uroporphyrinogen III C-methyltransferase
3328	 54.30	0	3777080..3778276	+	398	30064905	hemY	S3882	-	putative protoheme IX biogenesis protein
3329	 53.01	0	3779138..3779503	+	121	161486404	-	S3883	-	insertion sequence 2 OrfA protein
3330	 55.19	0	3779461..3780366	+	301	161486403	-	S3884	-	insertion element IS2 transposase InsD
3331	 51.21	0	3780536..3781771	-	411	30064908	aslB	S3885	-	putative arylsulfatase regulator
3332	 53.25	0	3782457..3783842	-	461	30064909	yifK	S3890	-	putative transport protein YifK
3333	 53.31	0	3784033..3784773	-	246	30064910	wecG	S3891	-	putative UDP-N-acetyl-D-mannosaminuronic acid transferase
3334	 51.88	0	3784776..3786128	-	450	30064911	wecF	S3892	-	putative entero common antigen polymerase
3335	 52.41	0	3786125..3787204	-	359	30064912	yifM	S3893	-	4-alpha-L-fucosyltransferase
3336	 53.24	0	3787201..3788451	-	416	30064913	wzxE	S3894	-	putative cytochrome
3337	 54.47	0	3788453..3789583	-	376	30064914	wecE	S3895	-	TDP-4-oxo-6-deoxy-D-glucose transaminase
3338	 54.76	0	3789588..3790133	-	181	30064915	wecD	S3896	-	TDP-fucosamine acetyltransferase
3339	 54.99	0	3790240..3791121	-	293	30064916	rffH	S3897	-	glucose-1-phosphate thymidylyltransferase
3340	 53.56	0	3791140..3792207	-	355	30064917	rffG	S3898	-	dTDP-glucose 4,6-dehydratase
3341	 53.76	0	3792207..3793469	-	420	30064918	wecC	S3899	-	UDP-N-acetyl-D-mannosamine dehydrogenase
3342	 52.69	0	3793466..3794638	-	390	30064919	wecB	S3900	-	UDP-N-acetyl glucosamine-2-epimerase
3343	 52.44	0	3794652..3795698	-	348	30064920	wzzE	S3901	-	lipopolysaccharide biosynthesis protein WzzE
3344	 49.28	0	3795710..3796813	-	367	30064921	rfe	S3902	-	UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase
3345	 50.24	0	3797053..3798312	-	419	30064922	rho	S3903	-	transcription termination factor Rho
3346	 49.02	0	3798397..3798498	-	33	30064923	rhoL	S3904	-	putative Rho operon leader peptide
3347	 50.00	0	3798639..3799022	-	127	30064924	trxA	S3905	-	thioredoxin
3348	 52.45	0	3799099..3800364	+	421	30064925	rhlB	S3906	-	ATP-dependent RNA helicase RhlB
3349	 53.54	0	3800498..3801982	+	494	30064926	gppA	S3907	-	guanosine pentaphosphate phosphohydrolase
3350	 53.56	0	3802029..3804050	-	673	30064927	rep	S3908	-	ATP-dependent DNA helicase Rep
3351	 51.06	0	3804137..3804418	+	93	30064928	ppiC	S3909	-	peptidyl-prolyl cis-trans isomerase C (rotamase C)
3352	 53.52	0	3804464..3805939	-	491	30064929	ilvC	S3910	-	ketol-acid reductoisomerase
3353	 57.58	+1	3806089..3806979	+	296	30064930	ilvY	S3911	-	DNA-binding transcriptional regulator IlvY
3354	 58.64	+1	3806976..3808520	-	514	30064931	ilvA	S3912	-	threonine dehydratase
3355	 56.46	+1	3808523..3810373	-	616	30064932	ilvD	S3913	-	dihydroxy-acid dehydratase
3356	 54.41	0	3810438..3811367	-	309	30064933	ilvE	S3914	-	branched-chain amino acid aminotransferase
3357	 49.43	0	3811387..3811647	-	86	30064934	ilvM	S3915	-	acetolactate synthase 2 regulatory subunit
3358	 54.58	0	3811647..3813293	-	548	30064935	ilvG	S3917	-	acetolactate synthase 2 catalytic subunit
3359	 53.54	0	3813432..3813530	-	32	30064936	ilvL	S3918	-	ilvG operon leader peptide
3360	 48.08	0	3815386..3815724	-	112	30064937	yifE	S3920	-	hypothetical protein
3361	 48.69	0	3815843..3816682	+	279	30064938	yifA	S3921	-	transcriptional regulator HdfR
3362	 49.54	0	3822630..3823178	+	182	30064939	yieP	S3929	-	hypothetical protein
3363	 49.36	0	3823225..3824628	+	467	30064940	yieO	S3930	-	putative transport protein
3364	 50.41	0	3824594..3825577	-	327	30064941	rbsR	S3931	-	transcriptional repressor RbsR
3365	 52.28	0	3825590..3826534	-	314	30064942	rbsK	S3932	-	ribokinase
3366	 53.00	0	3827560..3828525	-	321	30064943	rbsC	S3934	-	ribose ABC transporter permease protein
3367	 52.98	0	3829707..3830210	-	167	30064944	-	S3936	-	IS1 orfB
3368	 52.90	0	3830129..3830404	-	91	30064945	-	S3937	-	IS1 orfA
3369	 46.90	-1	3830819..3831238	-	139	30064946	rbsD	S3939	-	D-ribose pyranase
3370	 51.47	0	3831405..3833273	-	622	30064947	trkD	S3940	-	potassium transport protein Kup
3371	 54.10	0	3833431..3834759	-	442	30064948	-	S3941	-	IS4 orf
3372	 49.24	0	3834909..3836429	+	506	30064949	yieN	S3942	-	regulatory ATPase RavA
3373	 52.55	0	3836423..3837874	+	483	161486402	yieM	S3943	-	hypothetical protein
3374	 56.50	+1	3837879..3838871	-	330	30064951	asnA	S3944	-	asparagine synthetase AsnA
3375	 49.24	0	3839023..3839481	+	152	30064952	asnC	S3945	-	DNA-binding transcriptional regulator AsnC
3376	 49.77	0	3839571..3840014	+	147	30064953	mioC	S3946	-	flavodoxin
3377	 54.50	0	3840393..3842282	+	629	30064954	gidA	S3947	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
3378	 48.56	0	3842346..3842969	+	207	30064955	gidB	S3948	-	glucose-inhibited division protein B
3379	 51.97	0	3843586..3843966	+	126	161486401	atpI	S3949	-	F0F1 ATP synthase subunit I
3380	 49.88	0	3843975..3844790	+	271	30064957	atpB	S3950	-	F0F1 ATP synthase subunit A
3381	 54.17	0	3844837..3845076	+	79	30064958	atpE	S3951	-	F0F1 ATP synthase subunit C
3382	 52.65	0	3845138..3845608	+	156	30064959	atpF	S3952	-	F0F1 ATP synthase subunit B
3383	 51.31	0	3845623..3846156	+	177	30064960	atpH	S3953	-	F0F1 ATP synthase subunit delta
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.