IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3220	 55.19	0	3655963..3656868	+	301	161486408	-	S3761	-	insertion element IS2 transposase InsD
3221	 52.74	0	3656898..3657881	-	327	30064798	kdgT	S3762	-	2-keto-3-deoxygluconate permease
3222	 53.62	0	3658141..3658761	-	206	30064799	sodA	S3763	-	superoxide dismutase
3223	 49.84	0	3660077..3661015	-	312	30064800	rhaR	S3765	-	transcriptional activator RhaR
3224	 51.73	0	3660999..3661835	-	278	30064801	rhaS	S3766	-	transcriptional activator RhaS
3225	 55.24	0	3662123..3663592	+	489	30064802	rhaB	S3767	-	rhamnulokinase
3226	 56.27	+1	3663589..3664848	+	419	30064803	rhaA	S3768	-	L-rhamnose isomerase
3227	 54.52	0	3665273..3665914	+	213	30064804	rhaD	S3769	-	rhamnulose-1-phosphate aldolase
3228	 49.84	0	3665924..3666238	+	104	30064805	yiiL	S3770	-	hypothetical protein
3229	 50.34	0	3666539..3666985	+	148	30064806	frvA	S3771	-	putative fructose-like phosphotransferase system subunit EIIA
3230	 55.79	+1	3666996..3668447	+	483	30064807	frvB	S3772	-	putative PTS transporter components IIBC
3231	 52.66	0	3668437..3669507	+	356	30064808	frvX	S3773	-	putative fructose-specific phosphotransferase system protein FrvX
3232	 52.84	0	3669507..3670157	+	216	30064809	frvR	S3774	-	putative frv operon regulatory protein
3233	 52.54	0	3670191..3670466	+	91	30064810	-	S3775	-	IS1 orfA
3234	 52.98	0	3670385..3670888	+	167	30064811	-	S3776	-	IS1 orfB
3235	 53.12	0	3670960..3671793	-	277	30064812	fdhD	S3777	-	formate dehydrogenase accessory protein
3236	 55.03	0	3671987..3675037	+	1016	30064813	fdoG	S3778	-	formate dehydrogenase-O, major subunit
3237	 55.59	0	3675050..3675952	+	300	30064814	fdoH	S3779	-	formate dehydrogenase-O, iron-sulfur subunit
3238	 52.36	0	3675949..3676584	+	211	30064815	fdoI	S3780	-	formate dehydrogenase-O subunit gamma
3239	 55.38	0	3676581..3677510	+	309	30064816	fdhE	S3781	-	formate dehydrogenase accessory protein FdhE
3240	 45.68	-1	3677840..3678082	-	80	30064817	yiiF	S3782	-	hypothetical protein
3241	 45.93	-1	3678300..3678545	-	81	30064818	yiiE	S3783	-	hypothetical protein
3242	 39.79	-2	3679197..3680342	-	381	30064819	-	S4827	-	hypothetical protein
3243	 35.71	-2	3680500..3680751	-	83	30064820	-	S4828	-	hypothetical protein
3244	 52.90	0	3680897..3681172	+	91	30064821	-	S3784	-	IS1 orfA
3245	 53.37	0	3681091..3681594	+	167	30064822	-	S3785	-	IS1 orfB
3246	 54.95	0	3682136..3683125	-	329	30064823	yiiD	S3786	-	putative acetyltransferase
3247	 55.25	0	3683122..3683559	-	145	30064824	yihZ	S3787	-	D-tyrosyl-tRNA deacylase
3248	 50.74	0	3683556..3684428	-	290	30064825	rbn	S3788	-	ribonuclease BN
3249	 50.17	0	3684422..3685021	-	199	30064826	yihX	S3789	-	phosphatase
3250	 52.29	0	3685120..3685905	-	261	30064827	yihW	S3790	-	putative DEOR-type transcriptional regulator
3251	 55.74	+1	3685939..3686835	-	298	30064828	yihV	S3791	-	putative kinase
3252	 55.30	0	3687003..3687899	+	298	30064829	yihU	S3792	-	putative dehydrogenase
3253	 53.70	0	3687923..3688801	+	292	30064830	yihT	S3793	-	putative aldolase
3254	 53.22	0	3688818..3690059	+	413	30064831	yihS	S3794	-	hypothetical protein
3255	 48.17	0	3690197..3691099	+	300	30064832	yihR	S3795	-	putative aldose-1-epimerase
3256	 53.22	0	3691298..3693334	+	678	30064833	yihQ	S3796	-	alpha-glucosidase
3257	 44.73	-1	3694797..3696200	+	467	30064834	yihO	S3798	-	putative permease
3258	 53.17	0	3696613..3697116	-	167	30064835	-	S3800	-	IS1 orfB
3259	 52.90	0	3697035..3697310	-	91	30064836	-	S3801	-	IS1 orfA
3260	 44.85	-1	3697339..3698397	-	352	30064837	yihN	S3802	-	putative resistance protein
3261	 43.53	-1	3698499..3699479	-	326	30064838	yihM	S3803	-	hypothetical protein
3262	 48.95	0	3699487..3700197	-	236	30064839	yihL	S3804	-	putative transcriptional regulator
3263	 53.12	0	3700414..3702237	-	607	30064840	yihK	S3805	-	GTP-binding protein
3264	 52.84	0	3702610..3704019	+	469	30064841	glnA	S3806	-	glutamine synthetase
3265	 54.48	0	3704192..3705241	+	349	30064842	glnL	S3807	-	nitrogen regulation protein NR(II)
3266	 56.45	+1	3705253..3706662	+	469	30064843	glnG	S3808	-	nitrogen regulation protein NR(I)
3267	 52.84	0	3707113..3708486	-	457	30064844	hemN	S3809	-	coproporphyrinogen III oxidase
3268	 52.35	0	3708675..3709184	-	169	30064845	yihI	S3810	-	hypothetical protein
3269	 51.34	0	3709766..3710398	+	210	161486407	yihA	S3811	-	GTPase EngB
3270	 51.85	0	3710780..3713566	-	928	30064847	polA	S3813	-	DNA polymerase I
3271	 45.44	-1	3713930..3714862	+	310	30064848	yihG	S3814	-	putative endonuclease
3272	 41.28	-2	3714903..3716375	-	490	30064849	yihF	S3815	-	hypothetical protein
3273	 48.01	0	3716488..3717114	-	208	30064850	dsbA	S3816	-	periplasmic protein disulfide isomerase I
3274	 48.23	0	3717131..3718117	-	328	30064851	yihE	S3817	-	serine/threonine protein kinase
3275	 45.19	-1	3718194..3718463	-	89	30064852	yihD	S3818	-	hypothetical protein
3276	 50.94	0	3718533..3719117	+	194	30064853	mobA	S3819	-	molybdopterin-guanine dinucleotide biosynthesis protein A
3277	 48.48	0	3719099..3719626	+	175	30064854	mobB	S3820	-	molybdopterin-guanine dinucleotide biosynthesis protein B
3278	 51.47	0	3725208..3725753	-	181	30064855	hemG	S3826	-	protoporphyrinogen oxidase
3279	 52.62	0	3725765..3727216	-	483	30064856	trkH	S3827	-	potassium transporter
3280	 55.61	0	3727255..3727869	-	204	30064857	yigZ	S3828	-	hypothetical protein
3281	 53.53	0	3727869..3729200	-	443	30064858	pepQ	S3829	-	proline dipeptidase
3282	 55.11	0	3729390..3731579	+	729	30064859	fadB	S3830	-	multifunctional fatty acid oxidation complex subunit alpha
3283	 58.25	+1	3731589..3732752	+	387	30064860	fadA	S3831	-	3-ketoacyl-CoA thiolase
3284	 52.71	0	3732944..3733645	-	233	30064861	fre	S3832	-	FMN reductase
3285	 53.61	0	3733691..3735184	-	497	30064862	yigC	S3833	-	3-octaprenyl-4-hydroxybenzoate decarboxylase
3286	 49.90	0	3735351..3735839	+	162	30064863	rfaH	S3834	-	transcriptional activator RfaH
3287	 54.92	0	3735836..3736618	-	260	30064864	yigW	S3836	-	DNase TatD
3288	 51.35	0	3736660..3737436	-	258	30064865	yigU	S3837	-	TatABCE protein translocation system subunit
3289	 55.43	0	3737439..3737954	-	171	30064866	-	S3838	-	sec-independent translocase
3290	 44.87	-1	3737958..3738269	-	103	30064867	tatA	S3840	-	twin argininte translocase protein A
3291	 50.09	0	3738306..3739946	-	546	30064868	ubiB	S3841	-	putative ubiquinone biosynthesis protein UbiB
3292	 55.61	0	3739943..3740548	-	201	30064869	yigP	S3842	-	hypothetical protein
3293	 51.98	0	3740562..3741317	-	251	30064870	ubiE	S3843	-	ubiquinone/menaquinone biosynthesis methyltransferase
3294	 52.87	0	3741412..3742824	-	470	30064871	yigN	S3844	-	DNA recombination protein RmuC
3295	 53.67	0	3742980..3743741	-	253	30064872	udp	S3845	-	uridine phosphorylase
3296	 54.69	0	3744111..3744419	-	102	30064873	-	S3847	-	hypothetical protein
3297	 55.75	+1	3744856..3747117	-	753	30064874	metE	S3848	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
3298	 56.39	+1	3747353..3748306	+	317	30064875	metR	S3849	-	regulator for metE and metH
3299	 54.89	0	3748194..3749093	-	299	30064876	yigM	S3850	-	hypothetical protein
3300	 51.56	0	3749169..3749969	-	266	30064877	yigL	S3851	-	putative sugar phosphatase
3301	 53.67	0	3749977..3750999	-	340	30064878	pldB	S3852	-	lysophospholipase L2
3302	 50.36	0	3751314..3751730	+	138	30064879	yigK	S3853	-	hypothetical protein
3303	 50.95	0	3751792..3752160	-	122	30064880	yigJ	S3854	-	hypothetical protein
3304	 54.85	0	3752476..3754311	-	611	30064881	recQ	S3855	-	ATP-dependent DNA helicase RecQ
3305	 51.15	0	3754438..3755307	-	289	30064882	pldA	S3856	-	phospholipase A
3306	 53.21	0	3755472..3755939	+	155	161486406	yigI	S3857	-	hypothetical protein
3307	 50.73	0	3755991..3756881	+	296	30064884	rarD	S3858	-	hypothetical protein
3308	 32.85	-2	3756940..3757356	+	138	30064885	yigG	S3859	-	hypothetical protein
3309	 34.12	-2	3757370..3757750	+	126	30064886	yigF	S3860	-	hypothetical protein
3310	 52.68	0	3757791..3758741	-	316	30064887	corA	S3861	-	magnesium/nickel/cobalt transporter CorA
3311	 49.85	0	3759111..3759449	+	112	30064888	yigE	S3862	-	hypothetical protein
3312	 54.18	0	3759460..3760788	-	442	30064889	-	S3863	-	IS4 orf
3313	 45.33	-1	3761014..3761313	+	99	30064890	-	S3864	-	hypothetical protein
3314	 57.47	+1	3761460..3763622	-	720	30064891	uvrD	S3865	-	DNA-dependent helicase II
3315	 55.09	0	3763706..3764422	-	238	30064892	yigB	S3866	-	flavin mononucleotide phosphatase
3316	 54.07	0	3764422..3765318	-	298	30064893	xerC	S3867	-	site-specific tyrosine recombinase XerC
3317	 55.93	+1	3765315..3766022	-	235	30064894	yigA	S3868	-	hypothetical protein
3318	 55.15	0	3766019..3766843	-	274	161486405	dapF	S3869	-	diaminopimelate epimerase
3319	 52.45	0	3766880..3767083	-	67	30064896	yifL	S3870	-	putative outer membrane lipoprotein
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.