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Shigella flexneri 2a str. 2457T, complete genome - 1..4599354 4061 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3153 52.57 0 3568193..3572221 - 1342 30064730 rpoB S3675 - DNA-directed RNA polymerase subunit beta 3154 46.17 -1 3572541..3572906 - 121 30064731 rplL S3676 - 50S ribosomal protein L7/L12 3155 52.41 0 3572973..3573470 - 165 30064732 rplJ S3677 - 50S ribosomal protein L10 3156 51.35 0 3573883..3574587 - 234 30064733 rplA S3678 - 50S ribosomal protein L1 3157 52.21 0 3574591..3575019 - 142 30064734 rplK S3679 - 50S ribosomal protein L11 3158 51.47 0 3575178..3575723 - 181 30064735 nusG S3680 - transcription antitermination protein NusG 3159 55.21 0 3575725..3576108 - 127 30064736 secE S3681 - preprotein translocase subunit SecE 3160 53.25 0 3576338..3577522 - 394 30064737 tuf S3682 - elongation factor Tu 3161 39.10 -2 3578098..3578253 + 51 30064738 - S3687 - hypothetical protein 3162 44.55 -1 3578464..3579390 + 308 30064739 coaA S3688 - pantothenate kinase 3163 49.48 0 3579419..3580384 - 321 30064740 birA S3689 - biotin--protein ligase 3164 46.45 -1 3580381..3581409 - 342 30064741 murB S3690 - UDP-N-acetylenolpyruvoylglucosamine reductase 3165 51.63 0 3586922..3587779 - 285 161486412 murI S3695 - glutamate racemase 3166 50.03 0 3587724..3589568 - 614 30064743 btuB S3696 - vitamin B12/cobalamin outer membrane transporter 3167 51.04 0 3589937..3591037 + 366 30064744 trmA S3697 - tRNA (uracil-5-)-methyltransferase 3168 49.17 0 3591077..3591436 - 119 30064745 yijD S3698 - hypothetical protein 3169 52.48 0 3591436..3592140 - 234 30064746 yijC S3699 - DNA-binding transcriptional repressor FabR 3170 51.96 0 3592407..3593807 + 466 161486411 udhA S3700 - soluble pyridine nucleotide transhydrogenase 3171 54.90 0 3593790..3594707 - 305 30064748 oxyR S3701 - DNA-binding transcriptional regulator OxyR 3172 52.98 0 3595902..3596405 - 167 30064749 - S3704 - IS1 orfB 3173 53.26 0 3596324..3596599 - 91 30064750 - S3705 - IS1 orfA 3174 50.04 0 3597087..3598301 - 404 30064751 - S3707 - putative sensor protein 3175 54.10 0 3598709..3600037 - 442 30064752 - S3708 - IS4 orf 3176 56.04 +1 3600239..3601612 - 457 30064753 argH S3709 - argininosuccinate lyase 3177 55.04 0 3601673..3602446 - 257 30064754 argB S3710 - acetylglutamate kinase 3178 53.43 0 3602457..3603461 - 334 30064755 argC S3711 - N-acetyl-gamma-glutamyl-phosphate reductase 3179 51.39 0 3603615..3604766 + 383 30064756 argE S3712 - acetylornithine deacetylase 3180 55.66 +1 3605118..3607769 + 883 30064757 ppc S3713 - phosphoenolpyruvate carboxylase 3181 50.69 0 3607952..3609685 + 577 30064758 yijP S3714 - hypothetical protein 3182 52.93 0 3609834..3610685 + 283 30064759 yijO S3715 - putative ARAC-type regulatory protein 3183 56.43 +1 3610672..3611013 - 113 30064760 frwD S3716 - putative fructose-like phosphotransferase EIIB subunit 3 3184 54.84 0 3611015..3611893 - 292 30064761 pflC S3717 - pyruvate formate lyase II activase 3185 52.87 0 3611859..3614156 - 765 30064762 pflD S3718 - putative formate acetyltransferase 2 3186 49.53 0 3614207..3614527 - 106 30064763 frwB S3719 - putative fructose-like phosphotransferase EIIB subunit 2 3187 53.80 0 3614542..3615621 - 359 30064764 frwC S3720 - putative fructose-like permease EIIC subunit 2 3188 55.80 +1 3622125..3624305 - 726 30064765 katG S3727 - catalase; hydroperoxidase HPI(I) 3189 52.30 0 3624634..3625524 - 296 30064766 metF S3728 - 5,10-methylenetetrahydrofolate reductase 3190 58.12 +1 3625873..3628305 - 810 30064767 metL S3729 - bifunctional aspartate kinase II/homoserine dehydrogenase II 3191 54.95 0 3628308..3629468 - 386 30064768 metB S3730 - cystathionine gamma-synthase 3192 51.89 0 3629745..3630062 + 105 30064769 metJ S3731 - transcriptional repressor protein MetJ 3193 51.89 0 3630246..3630854 + 202 30064770 yiiX S3732 - putative peptidoglycan peptidase 3194 48.83 0 3630915..3631127 - 70 30064771 rpmE S3733 - 50S ribosomal protein L31 3195 57.39 +1 3631330..3633528 + 732 30064772 priA S3734 - primosome assembly protein PriA 3196 51.56 0 3633684..3634709 + 341 30064773 cytR S3735 - DNA-binding transcriptional regulator CytR 3197 57.81 +1 3634801..3635760 + 319 30064774 ftsN S3736 - essential cell division protein 3198 52.54 0 3635853..3636383 + 176 30064775 hslV S3737 - ATP-dependent protease peptidase subunit 3199 52.33 0 3636393..3637724 + 443 30064776 hslU S3738 - ATP-dependent protease ATP-binding subunit 3200 53.40 0 3637791..3638717 + 308 30064777 menA S3739 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase 3201 52.26 0 3638810..3639295 + 161 30064778 menG S3740 - ribonuclease activity regulator protein RraA 3202 48.37 0 3639380..3639625 - 81 30064779 yiiU S3741 - hypothetical protein 3203 50.39 0 3640051..3640695 + 214 30064780 glpF S3742 - glycerol diffusion facilitator protein 3204 54.21 0 3640919..3642427 + 502 30064781 glpK S3743 - glycerol kinase 3205 56.58 +1 3642657..3643667 + 336 30064782 glpX S3744 - fructose 1,6-bisphosphatase II 3206 53.41 0 3643764..3644510 + 248 30064783 fpr S3745 - ferredoxin-NADP reductase 3207 43.12 -2 3644515..3644943 - 142 30064784 yiiT S3746 - universal stress protein UspD 3208 46.67 -1 3644970..3645269 - 99 30064785 yiiS S3747 - hypothetical protein 3209 49.00 0 3646022..3646621 + 199 30064786 yiiQ S3749 - hypothetical protein 3210 52.86 0 3646729..3647496 + 255 30064787 tpiA S3750 - triosephosphate isomerase 3211 48.68 0 3647551..3648306 - 251 30064788 cdh S3751 - CDP-diacylglycerol pyrophosphatase 3212 51.11 0 3648413..3649402 - 329 30064789 sbp S3752 - sulfate transporter subunit 3213 54.07 0 3649722..3650666 - 314 30064790 pfkA S3753 - 6-phosphofructokinase 3214 52.27 0 3650865..3651767 - 300 30064791 fieF S3754 - ferrous iron efflux protein F 3215 50.10 0 3651915..3652415 - 166 161486410 cpxP S3755 - periplasmic repressor CpxP 3216 51.22 0 3652565..3653263 + 232 30064793 cpxR S3757 - DNA-binding transcriptional regulator CpxR 3217 54.51 0 3653260..3654633 + 457 30064794 cpxA S3758 - two-component sensor protein 3218 53.48 0 3654739..3655413 - 224 30064795 yiiM S3759 - hypothetical protein 3219 53.28 0 3655640..3656005 + 121 161486409 - S3760 - insertion sequence 2 OrfA protein 3220 55.19 0 3655963..3656868 + 301 161486408 - S3761 - insertion element IS2 transposase InsD 3221 52.74 0 3656898..3657881 - 327 30064798 kdgT S3762 - 2-keto-3-deoxygluconate permease 3222 53.62 0 3658141..3658761 - 206 30064799 sodA S3763 - superoxide dismutase 3223 49.84 0 3660077..3661015 - 312 30064800 rhaR S3765 - transcriptional activator RhaR 3224 51.73 0 3660999..3661835 - 278 30064801 rhaS S3766 - transcriptional activator RhaS 3225 55.24 0 3662123..3663592 + 489 30064802 rhaB S3767 - rhamnulokinase 3226 56.27 +1 3663589..3664848 + 419 30064803 rhaA S3768 - L-rhamnose isomerase 3227 54.52 0 3665273..3665914 + 213 30064804 rhaD S3769 - rhamnulose-1-phosphate aldolase 3228 49.84 0 3665924..3666238 + 104 30064805 yiiL S3770 - hypothetical protein 3229 50.34 0 3666539..3666985 + 148 30064806 frvA S3771 - putative fructose-like phosphotransferase system subunit EIIA 3230 55.79 +1 3666996..3668447 + 483 30064807 frvB S3772 - putative PTS transporter components IIBC 3231 52.66 0 3668437..3669507 + 356 30064808 frvX S3773 - putative fructose-specific phosphotransferase system protein FrvX 3232 52.84 0 3669507..3670157 + 216 30064809 frvR S3774 - putative frv operon regulatory protein 3233 52.54 0 3670191..3670466 + 91 30064810 - S3775 - IS1 orfA 3234 52.98 0 3670385..3670888 + 167 30064811 - S3776 - IS1 orfB 3235 53.12 0 3670960..3671793 - 277 30064812 fdhD S3777 - formate dehydrogenase accessory protein 3236 55.03 0 3671987..3675037 + 1016 30064813 fdoG S3778 - formate dehydrogenase-O, major subunit 3237 55.59 0 3675050..3675952 + 300 30064814 fdoH S3779 - formate dehydrogenase-O, iron-sulfur subunit 3238 52.36 0 3675949..3676584 + 211 30064815 fdoI S3780 - formate dehydrogenase-O subunit gamma 3239 55.38 0 3676581..3677510 + 309 30064816 fdhE S3781 - formate dehydrogenase accessory protein FdhE 3240 45.68 -1 3677840..3678082 - 80 30064817 yiiF S3782 - hypothetical protein 3241 45.93 -1 3678300..3678545 - 81 30064818 yiiE S3783 - hypothetical protein 3242 39.79 -2 3679197..3680342 - 381 30064819 - S4827 - hypothetical protein 3243 35.71 -2 3680500..3680751 - 83 30064820 - S4828 - hypothetical protein 3244 52.90 0 3680897..3681172 + 91 30064821 - S3784 - IS1 orfA 3245 53.37 0 3681091..3681594 + 167 30064822 - S3785 - IS1 orfB 3246 54.95 0 3682136..3683125 - 329 30064823 yiiD S3786 - putative acetyltransferase 3247 55.25 0 3683122..3683559 - 145 30064824 yihZ S3787 - D-tyrosyl-tRNA deacylase 3248 50.74 0 3683556..3684428 - 290 30064825 rbn S3788 - ribonuclease BN 3249 50.17 0 3684422..3685021 - 199 30064826 yihX S3789 - phosphatase 3250 52.29 0 3685120..3685905 - 261 30064827 yihW S3790 - putative DEOR-type transcriptional regulator 3251 55.74 +1 3685939..3686835 - 298 30064828 yihV S3791 - putative kinase 3252 55.30 0 3687003..3687899 + 298 30064829 yihU S3792 - putative dehydrogenase 51.60 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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