IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3152	 53.91	0	3563893..3568116	-	1407	30064729	rpoC	S3674	-	DNA-directed RNA polymerase subunit beta'
3153	 52.57	0	3568193..3572221	-	1342	30064730	rpoB	S3675	-	DNA-directed RNA polymerase subunit beta
3154	 46.17	-1	3572541..3572906	-	121	30064731	rplL	S3676	-	50S ribosomal protein L7/L12
3155	 52.41	0	3572973..3573470	-	165	30064732	rplJ	S3677	-	50S ribosomal protein L10
3156	 51.35	0	3573883..3574587	-	234	30064733	rplA	S3678	-	50S ribosomal protein L1
3157	 52.21	0	3574591..3575019	-	142	30064734	rplK	S3679	-	50S ribosomal protein L11
3158	 51.47	0	3575178..3575723	-	181	30064735	nusG	S3680	-	transcription antitermination protein NusG
3159	 55.21	0	3575725..3576108	-	127	30064736	secE	S3681	-	preprotein translocase subunit SecE
3160	 53.25	0	3576338..3577522	-	394	30064737	tuf	S3682	-	elongation factor Tu
3161	 39.10	-2	3578098..3578253	+	51	30064738	-	S3687	-	hypothetical protein
3162	 44.55	-1	3578464..3579390	+	308	30064739	coaA	S3688	-	pantothenate kinase
3163	 49.48	0	3579419..3580384	-	321	30064740	birA	S3689	-	biotin--protein ligase
3164	 46.45	-1	3580381..3581409	-	342	30064741	murB	S3690	-	UDP-N-acetylenolpyruvoylglucosamine reductase
3165	 51.63	0	3586922..3587779	-	285	161486412	murI	S3695	-	glutamate racemase
3166	 50.03	0	3587724..3589568	-	614	30064743	btuB	S3696	-	vitamin B12/cobalamin outer membrane transporter
3167	 51.04	0	3589937..3591037	+	366	30064744	trmA	S3697	-	tRNA (uracil-5-)-methyltransferase
3168	 49.17	0	3591077..3591436	-	119	30064745	yijD	S3698	-	hypothetical protein
3169	 52.48	0	3591436..3592140	-	234	30064746	yijC	S3699	-	DNA-binding transcriptional repressor FabR
3170	 51.96	0	3592407..3593807	+	466	161486411	udhA	S3700	-	soluble pyridine nucleotide transhydrogenase
3171	 54.90	0	3593790..3594707	-	305	30064748	oxyR	S3701	-	DNA-binding transcriptional regulator OxyR
3172	 52.98	0	3595902..3596405	-	167	30064749	-	S3704	-	IS1 orfB
3173	 53.26	0	3596324..3596599	-	91	30064750	-	S3705	-	IS1 orfA
3174	 50.04	0	3597087..3598301	-	404	30064751	-	S3707	-	putative sensor protein
3175	 54.10	0	3598709..3600037	-	442	30064752	-	S3708	-	IS4 orf
3176	 56.04	+1	3600239..3601612	-	457	30064753	argH	S3709	-	argininosuccinate lyase
3177	 55.04	0	3601673..3602446	-	257	30064754	argB	S3710	-	acetylglutamate kinase
3178	 53.43	0	3602457..3603461	-	334	30064755	argC	S3711	-	N-acetyl-gamma-glutamyl-phosphate reductase
3179	 51.39	0	3603615..3604766	+	383	30064756	argE	S3712	-	acetylornithine deacetylase
3180	 55.66	+1	3605118..3607769	+	883	30064757	ppc	S3713	-	phosphoenolpyruvate carboxylase
3181	 50.69	0	3607952..3609685	+	577	30064758	yijP	S3714	-	hypothetical protein
3182	 52.93	0	3609834..3610685	+	283	30064759	yijO	S3715	-	putative ARAC-type regulatory protein
3183	 56.43	+1	3610672..3611013	-	113	30064760	frwD	S3716	-	putative fructose-like phosphotransferase EIIB subunit 3
3184	 54.84	0	3611015..3611893	-	292	30064761	pflC	S3717	-	pyruvate formate lyase II activase
3185	 52.87	0	3611859..3614156	-	765	30064762	pflD	S3718	-	putative formate acetyltransferase 2
3186	 49.53	0	3614207..3614527	-	106	30064763	frwB	S3719	-	putative fructose-like phosphotransferase EIIB subunit 2
3187	 53.80	0	3614542..3615621	-	359	30064764	frwC	S3720	-	putative fructose-like permease EIIC subunit 2
3188	 55.80	+1	3622125..3624305	-	726	30064765	katG	S3727	-	catalase; hydroperoxidase HPI(I)
3189	 52.30	0	3624634..3625524	-	296	30064766	metF	S3728	-	5,10-methylenetetrahydrofolate reductase
3190	 58.12	+1	3625873..3628305	-	810	30064767	metL	S3729	-	bifunctional aspartate kinase II/homoserine dehydrogenase II
3191	 54.95	0	3628308..3629468	-	386	30064768	metB	S3730	-	cystathionine gamma-synthase
3192	 51.89	0	3629745..3630062	+	105	30064769	metJ	S3731	-	transcriptional repressor protein MetJ
3193	 51.89	0	3630246..3630854	+	202	30064770	yiiX	S3732	-	putative peptidoglycan peptidase
3194	 48.83	0	3630915..3631127	-	70	30064771	rpmE	S3733	-	50S ribosomal protein L31
3195	 57.39	+1	3631330..3633528	+	732	30064772	priA	S3734	-	primosome assembly protein PriA
3196	 51.56	0	3633684..3634709	+	341	30064773	cytR	S3735	-	DNA-binding transcriptional regulator CytR
3197	 57.81	+1	3634801..3635760	+	319	30064774	ftsN	S3736	-	essential cell division protein
3198	 52.54	0	3635853..3636383	+	176	30064775	hslV	S3737	-	ATP-dependent protease peptidase subunit
3199	 52.33	0	3636393..3637724	+	443	30064776	hslU	S3738	-	ATP-dependent protease ATP-binding subunit
3200	 53.40	0	3637791..3638717	+	308	30064777	menA	S3739	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
3201	 52.26	0	3638810..3639295	+	161	30064778	menG	S3740	-	ribonuclease activity regulator protein RraA
3202	 48.37	0	3639380..3639625	-	81	30064779	yiiU	S3741	-	hypothetical protein
3203	 50.39	0	3640051..3640695	+	214	30064780	glpF	S3742	-	glycerol diffusion facilitator protein
3204	 54.21	0	3640919..3642427	+	502	30064781	glpK	S3743	-	glycerol kinase
3205	 56.58	+1	3642657..3643667	+	336	30064782	glpX	S3744	-	fructose 1,6-bisphosphatase II
3206	 53.41	0	3643764..3644510	+	248	30064783	fpr	S3745	-	ferredoxin-NADP reductase
3207	 43.12	-2	3644515..3644943	-	142	30064784	yiiT	S3746	-	universal stress protein UspD
3208	 46.67	-1	3644970..3645269	-	99	30064785	yiiS	S3747	-	hypothetical protein
3209	 49.00	0	3646022..3646621	+	199	30064786	yiiQ	S3749	-	hypothetical protein
3210	 52.86	0	3646729..3647496	+	255	30064787	tpiA	S3750	-	triosephosphate isomerase
3211	 48.68	0	3647551..3648306	-	251	30064788	cdh	S3751	-	CDP-diacylglycerol pyrophosphatase
3212	 51.11	0	3648413..3649402	-	329	30064789	sbp	S3752	-	sulfate transporter subunit
3213	 54.07	0	3649722..3650666	-	314	30064790	pfkA	S3753	-	6-phosphofructokinase
3214	 52.27	0	3650865..3651767	-	300	30064791	fieF	S3754	-	ferrous iron efflux protein F
3215	 50.10	0	3651915..3652415	-	166	161486410	cpxP	S3755	-	periplasmic repressor CpxP
3216	 51.22	0	3652565..3653263	+	232	30064793	cpxR	S3757	-	DNA-binding transcriptional regulator CpxR
3217	 54.51	0	3653260..3654633	+	457	30064794	cpxA	S3758	-	two-component sensor protein
3218	 53.48	0	3654739..3655413	-	224	30064795	yiiM	S3759	-	hypothetical protein
3219	 53.28	0	3655640..3656005	+	121	161486409	-	S3760	-	insertion sequence 2 OrfA protein
3220	 55.19	0	3655963..3656868	+	301	161486408	-	S3761	-	insertion element IS2 transposase InsD
3221	 52.74	0	3656898..3657881	-	327	30064798	kdgT	S3762	-	2-keto-3-deoxygluconate permease
3222	 53.62	0	3658141..3658761	-	206	30064799	sodA	S3763	-	superoxide dismutase
3223	 49.84	0	3660077..3661015	-	312	30064800	rhaR	S3765	-	transcriptional activator RhaR
3224	 51.73	0	3660999..3661835	-	278	30064801	rhaS	S3766	-	transcriptional activator RhaS
3225	 55.24	0	3662123..3663592	+	489	30064802	rhaB	S3767	-	rhamnulokinase
3226	 56.27	+1	3663589..3664848	+	419	30064803	rhaA	S3768	-	L-rhamnose isomerase
3227	 54.52	0	3665273..3665914	+	213	30064804	rhaD	S3769	-	rhamnulose-1-phosphate aldolase
3228	 49.84	0	3665924..3666238	+	104	30064805	yiiL	S3770	-	hypothetical protein
3229	 50.34	0	3666539..3666985	+	148	30064806	frvA	S3771	-	putative fructose-like phosphotransferase system subunit EIIA
3230	 55.79	+1	3666996..3668447	+	483	30064807	frvB	S3772	-	putative PTS transporter components IIBC
3231	 52.66	0	3668437..3669507	+	356	30064808	frvX	S3773	-	putative fructose-specific phosphotransferase system protein FrvX
3232	 52.84	0	3669507..3670157	+	216	30064809	frvR	S3774	-	putative frv operon regulatory protein
3233	 52.54	0	3670191..3670466	+	91	30064810	-	S3775	-	IS1 orfA
3234	 52.98	0	3670385..3670888	+	167	30064811	-	S3776	-	IS1 orfB
3235	 53.12	0	3670960..3671793	-	277	30064812	fdhD	S3777	-	formate dehydrogenase accessory protein
3236	 55.03	0	3671987..3675037	+	1016	30064813	fdoG	S3778	-	formate dehydrogenase-O, major subunit
3237	 55.59	0	3675050..3675952	+	300	30064814	fdoH	S3779	-	formate dehydrogenase-O, iron-sulfur subunit
3238	 52.36	0	3675949..3676584	+	211	30064815	fdoI	S3780	-	formate dehydrogenase-O subunit gamma
3239	 55.38	0	3676581..3677510	+	309	30064816	fdhE	S3781	-	formate dehydrogenase accessory protein FdhE
3240	 45.68	-1	3677840..3678082	-	80	30064817	yiiF	S3782	-	hypothetical protein
3241	 45.93	-1	3678300..3678545	-	81	30064818	yiiE	S3783	-	hypothetical protein
3242	 39.79	-2	3679197..3680342	-	381	30064819	-	S4827	-	hypothetical protein
3243	 35.71	-2	3680500..3680751	-	83	30064820	-	S4828	-	hypothetical protein
3244	 52.90	0	3680897..3681172	+	91	30064821	-	S3784	-	IS1 orfA
3245	 53.37	0	3681091..3681594	+	167	30064822	-	S3785	-	IS1 orfB
3246	 54.95	0	3682136..3683125	-	329	30064823	yiiD	S3786	-	putative acetyltransferase
3247	 55.25	0	3683122..3683559	-	145	30064824	yihZ	S3787	-	D-tyrosyl-tRNA deacylase
3248	 50.74	0	3683556..3684428	-	290	30064825	rbn	S3788	-	ribonuclease BN
3249	 50.17	0	3684422..3685021	-	199	30064826	yihX	S3789	-	phosphatase
3250	 52.29	0	3685120..3685905	-	261	30064827	yihW	S3790	-	putative DEOR-type transcriptional regulator
3251	 55.74	+1	3685939..3686835	-	298	30064828	yihV	S3791	-	putative kinase
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.