version 1.0
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354 4061 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2942 48.64 0 3311539..3312015 - 158 30064519 greA S3439 - transcription elongation factor GreA 2943 53.14 0 3312263..3313696 + 477 30064520 dacB S3440 - D-alanyl-D-alanine carboxypeptidase/endopeptidase 2944 52.77 0 3313882..3315054 - 390 30064521 obgE S3441 - GTPase ObgE 2945 52.69 0 3315070..3316035 - 321 30064522 yhbE S3442 - hypothetical protein 2946 49.61 0 3316162..3316419 - 85 30064523 rpmA S3443 - 50S ribosomal protein L27 2947 48.40 0 3316440..3316751 - 103 30064524 rplU S3444 - 50S ribosomal protein L21 2948 52.67 0 3317009..3317980 + 323 30064525 ispB S3445 - octaprenyl diphosphate synthase 2949 49.46 0 3318207..3318485 + 92 30064526 nlp S3446 - DNA-binding transcriptional regulator Nlp 2950 53.33 0 3318533..3319792 - 419 30064527 murA S3447 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2951 50.00 0 3319847..3320116 - 89 30064528 yrbA S3448 - hypothetical protein 2952 52.56 0 3320261..3320650 - 129 30064529 yrbB S3449 - hypothetical protein 2953 52.04 0 3320554..3321189 - 211 30064530 yrbC S3450 - hypothetical protein 2954 49.82 0 3321208..3321759 - 183 30064531 vpsC S3451 - cytoplasmic membrane protein 2955 55.43 0 3321764..3322546 - 260 30064532 vpsB S3452 - integral membrane protein 2956 54.32 0 3322554..3323363 - 269 30064533 vpsA S3453 - putative ABC transporter ATP-binding protein YrbF 2957 51.86 0 3323573..3324538 + 321 30064534 yrbG S3454 - putative calcium/sodium:proton antiporter 2958 52.18 0 3324552..3325538 + 328 30064535 yrbH S3455 - D-arabinose 5-phosphate isomerase 2959 52.38 0 3325559..3326125 + 188 30064536 yrbI S3456 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 2960 46.35 -1 3326122..3326697 + 191 30064537 yrbK S3457 - hypothetical protein 2961 49.64 0 3326666..3327223 + 185 30064538 yhbN S3458 - hypothetical protein 2962 54.27 0 3327230..3327955 + 241 30064539 yhbG S3459 - putative ABC transporter ATP-binding protein YhbG 2963 53.00 0 3328003..3329436 + 477 30064540 rpoN S3460 - RNA polymerase factor sigma-54 2964 44.44 -1 3329459..3329746 + 95 30064541 yhbH S3461 - putative sigma(54) modulation protein 2965 51.83 0 3329864..3330355 + 163 30064542 ptsN S3462 - sugar-specific enzyme IIA component of PTS 2966 52.05 0 3330401..3331255 + 284 30064543 yhbJ S3463 - hypothetical protein 2967 49.08 0 3331252..3331524 + 90 30064544 ptsO S3464 - phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 2968 51.34 0 3331737..3332369 + 210 30064545 yrbL S3465 - hypothetical protein 2969 52.75 0 3333090..3333743 - 217 30064546 yhbL S3467 - isoprenoid biosynthesis protein 2970 50.62 0 3333973..3336309 - 778 30064547 arcB S3468 - aerobic respiration control sensor protein ArcB 2971 55.70 +1 3336405..3337334 - 309 30064548 yhcC S3469 - hypothetical protein 2972 57.09 +1 3337916..3342469 + 1517 161486426 gltB S3470 - glutamate synthase subunit alpha 2973 55.11 0 3342482..3343900 + 472 30064550 gltD S3471 - glutamate synthase subunit beta 2974 47.90 0 3345046..3346116 + 356 30064551 - S3473 - IS600 orf 2975 48.39 0 3346192..3346656 - 154 30064552 yhcH S3474 - hypothetical protein 2976 57.88 +1 3346653..3347528 - 291 161486425 yhcI S3475 - N-acetylmannosamine kinase 2977 57.97 +1 3347525..3348214 - 229 30064554 yhcJ S3476 - N-acetylmannosamine-6-phosphate 2-epimerase 2978 54.93 0 3348262..3349752 - 496 161486424 nanT S3477 - putative sialic acid transporter 2979 52.13 0 3349862..3350755 - 297 30064556 nanA S3478 - N-acetylneuraminate lyase 2980 52.11 0 3350877..3351659 - 260 30064557 yhcK S3479 - transcriptional regulator NanR 2981 52.54 0 3352106..3352381 + 91 30064558 - S3480 - IS1 orfA 2982 52.78 0 3352300..3352803 + 167 30064559 - S3481 - IS1 orfB 2983 50.95 0 3352824..3354191 + 455 30064560 yhcL S3482 - putative cryptic C4-dicarboxylate transporter DcuD 2984 55.22 0 3354234..3354731 - 165 30064561 sspB S3483 - ClpXP protease specificity-enhancing factor 2985 53.68 0 3354737..3355375 - 212 30064562 sspA S3484 - stringent starvation protein A 2986 52.42 0 3355770..3356162 - 130 30064563 rpsI S3485 - 30S ribosomal protein S9 2987 50.35 0 3356178..3356606 - 142 30064564 rplM S3486 - 50S ribosomal protein L13 2988 52.30 0 3356825..3357952 - 375 30064565 yhcM S3487 - hypothetical protein 2989 54.64 0 3358146..3358544 + 132 30064566 yhcB S3488 - cytochrome d ubiquinol oxidase subunit III 2990 52.53 0 3360135..3361202 + 355 30064567 degS S3490 - serine endoprotease 2991 52.08 0 3361264..3362202 - 312 30064568 mdh S3491 - malate dehydrogenase 2992 48.83 0 3362637..3363107 + 156 30064569 argR S3492 - arginine repressor 2993 46.98 -1 3363421..3363735 + 104 30064570 yhcN S3493 - hypothetical protein 2994 42.86 -2 3363791..3364063 - 90 30064571 yhcO S3494 - hypothetical protein 2995 52.49 0 3364155..3366122 - 655 30064572 yhcP S3495 - p-hydroxybenzoic acid efflux subunit AaeB 2996 53.70 0 3366128..3367060 - 310 30064573 yhcQ S3496 - p-hydroxybenzoic acid efflux subunit AaeA 2997 47.55 -1 3367068..3367271 - 67 161486423 yhcR S3497 - hypothetical protein 2998 53.07 0 3367472..3368383 + 303 30064575 yhcS S3498 - putative DNA-binding transcriptional regulator 2999 54.70 0 3368511..3369956 - 481 30064576 tldD S3499 - protease TldD 3000 52.41 0 3370112..3373072 - 986 30064577 yhdP S3500 - hypothetical protein 3001 52.11 0 3373980..3375449 - 489 30064578 cafA S3502 - ribonuclease G 3002 53.70 0 3375439..3376032 - 197 30064579 maf S3503 - Maf-like protein 3003 50.92 0 3376041..3376529 - 162 30064580 mreD S3504 - rod shape-determining protein MreD 3004 53.96 0 3376736..3377632 - 298 30064581 mreC S3505 - cell wall structural complex MreBCD transmembrane component MreC 3005 53.99 0 3377698..3378801 - 367 30064582 mreB S3506 - regulator of ftsI, penicillin binding protein 3 3006 50.49 0 3379046..3380986 - 646 30064583 yhdA S3507 - regulatory protein CsrD 3007 55.28 0 3381138..3382112 + 324 30064584 yhdH S3508 - putative dehydrogenase 3008 47.06 -1 3382170..3382271 - 33 30064585 - S3509 - hypothetical protein 3009 51.80 0 3383090..3383560 + 156 30064586 accB S3510 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3010 53.41 0 3383571..3384920 + 449 30064587 accC S3511 - acetyl-CoA carboxylase biotin carboxylase subunit 3011 53.91 0 3385029..3385271 + 80 30064588 yhdT S3512 - hypothetical protein 3012 54.13 0 3385261..3386712 + 483 30064589 panF S3513 - sodium/panthothenate symporter 3013 54.42 0 3386724..3387605 + 293 30064590 prmA S3514 - ribosomal protein L11 methyltransferase 3014 52.08 0 3388057..3388899 + 280 30064591 yhdG S3515 - putative dehydrogenase 3015 47.14 -1 3388925..3389221 + 98 30064592 fis S3516 - DNA-binding protein Fis 3016 47.57 0 3389307..3390191 + 294 30064593 yhdJ S3517 - putative methyltransferase 3017 53.17 0 3390469..3390972 - 167 30064594 - S3519 - IS1 orfB 3018 53.26 0 3390891..3391166 - 91 30064595 - S3520 - IS1 orfA 3019 48.91 0 3391510..3392427 + 305 30064596 yhdW S3521 - putative periplasmic binding transport protein 3020 52.78 0 3393056..3393559 - 167 30064597 - S3523 - IS1 orfB 3021 52.90 0 3393478..3393753 - 91 30064598 - S3524 - IS1 orfA 3022 51.72 0 3394451..3395554 + 367 30064599 yhdY S3526 - putative transport system permease protein 3023 46.77 -1 3395562..3396320 + 252 30064600 yhdZ S3527 - putative ATP-binding component of a transport system 3024 45.91 -1 3401985..3402755 + 256 30064601 yrdA S3535 - putative transferase 3025 49.22 0 3402731..3402988 - 85 30064602 yrdB S3536 - hypothetical protein 3026 49.21 0 3402985..3403803 - 272 30064603 aroE S3537 - shikimate 5-dehydrogenase 3027 52.36 0 3403808..3404380 - 190 30064604 yrdC S3538 - putative ribosome maturation factor 3028 49.71 0 3404385..3404903 - 172 30064605 yrdD S3539 - putative DNA topoisomerase 3029 46.62 -1 3404956..3405414 - 152 30064606 smg S3540 - hypothetical protein 3030 51.02 0 3405401..3406525 - 374 30064607 smf S3542 - hypothetical protein 3031 46.27 -1 3406690..3407199 + 169 30064608 def S3543 - peptide deformylase 3032 52.53 0 3407214..3408161 + 315 30064609 fmt S3544 - methionyl-tRNA formyltransferase 3033 50.00 0 3408207..3409496 + 429 30064610 sun S3545 - 16S rRNA methyltransferase B 3034 49.89 0 3409518..3410894 + 458 30064611 trkA S3546 - potassium transporter peripheral membrane component 3035 50.07 0 3411075..3411749 + 224 30064612 - S3547 - ISSfl3 orfA 3036 54.70 0 3411746..3412096 + 116 30064613 - S3548 - ISSfl3 orfB 3037 52.37 0 3412093..3413694 + 533 30064614 - S3549 - ISSfl3 orfC 3038 54.37 0 3413860..3415209 - 449 30064615 lysC S3550 - aspartate kinase III 3039 51.76 0 3415734..3417383 + 549 30064616 pgi S3551 - glucose-6-phosphate isomerase 3040 60.49 +2 3417846..3418088 + 80 30064617 yjbE S3552 - hypothetical protein 3041 54.41 0 3418172..3418840 + 222 30064618 yjbF S3553 - hypothetical protein 51.60 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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