IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2940	 50.16	0	3310335..3310964	-	209	30064517	rrmJ	S3437	-	23S rRNA methyltransferase J
2941	 48.64	0	3311090..3311383	+	97	30064518	yhbY	S3438	-	RNA-binding protein YhbY
2942	 48.64	0	3311539..3312015	-	158	30064519	greA	S3439	-	transcription elongation factor GreA
2943	 53.14	0	3312263..3313696	+	477	30064520	dacB	S3440	-	D-alanyl-D-alanine carboxypeptidase/endopeptidase
2944	 52.77	0	3313882..3315054	-	390	30064521	obgE	S3441	-	GTPase ObgE
2945	 52.69	0	3315070..3316035	-	321	30064522	yhbE	S3442	-	hypothetical protein
2946	 49.61	0	3316162..3316419	-	85	30064523	rpmA	S3443	-	50S ribosomal protein L27
2947	 48.40	0	3316440..3316751	-	103	30064524	rplU	S3444	-	50S ribosomal protein L21
2948	 52.67	0	3317009..3317980	+	323	30064525	ispB	S3445	-	octaprenyl diphosphate synthase
2949	 49.46	0	3318207..3318485	+	92	30064526	nlp	S3446	-	DNA-binding transcriptional regulator Nlp
2950	 53.33	0	3318533..3319792	-	419	30064527	murA	S3447	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2951	 50.00	0	3319847..3320116	-	89	30064528	yrbA	S3448	-	hypothetical protein
2952	 52.56	0	3320261..3320650	-	129	30064529	yrbB	S3449	-	hypothetical protein
2953	 52.04	0	3320554..3321189	-	211	30064530	yrbC	S3450	-	hypothetical protein
2954	 49.82	0	3321208..3321759	-	183	30064531	vpsC	S3451	-	cytoplasmic membrane protein
2955	 55.43	0	3321764..3322546	-	260	30064532	vpsB	S3452	-	integral membrane protein
2956	 54.32	0	3322554..3323363	-	269	30064533	vpsA	S3453	-	putative ABC transporter ATP-binding protein YrbF
2957	 51.86	0	3323573..3324538	+	321	30064534	yrbG	S3454	-	putative calcium/sodium:proton antiporter
2958	 52.18	0	3324552..3325538	+	328	30064535	yrbH	S3455	-	D-arabinose 5-phosphate isomerase
2959	 52.38	0	3325559..3326125	+	188	30064536	yrbI	S3456	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
2960	 46.35	-1	3326122..3326697	+	191	30064537	yrbK	S3457	-	hypothetical protein
2961	 49.64	0	3326666..3327223	+	185	30064538	yhbN	S3458	-	hypothetical protein
2962	 54.27	0	3327230..3327955	+	241	30064539	yhbG	S3459	-	putative ABC transporter ATP-binding protein YhbG
2963	 53.00	0	3328003..3329436	+	477	30064540	rpoN	S3460	-	RNA polymerase factor sigma-54
2964	 44.44	-1	3329459..3329746	+	95	30064541	yhbH	S3461	-	putative sigma(54) modulation protein
2965	 51.83	0	3329864..3330355	+	163	30064542	ptsN	S3462	-	sugar-specific enzyme IIA component of PTS
2966	 52.05	0	3330401..3331255	+	284	30064543	yhbJ	S3463	-	hypothetical protein
2967	 49.08	0	3331252..3331524	+	90	30064544	ptsO	S3464	-	phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr)
2968	 51.34	0	3331737..3332369	+	210	30064545	yrbL	S3465	-	hypothetical protein
2969	 52.75	0	3333090..3333743	-	217	30064546	yhbL	S3467	-	isoprenoid biosynthesis protein
2970	 50.62	0	3333973..3336309	-	778	30064547	arcB	S3468	-	aerobic respiration control sensor protein ArcB
2971	 55.70	+1	3336405..3337334	-	309	30064548	yhcC	S3469	-	hypothetical protein
2972	 57.09	+1	3337916..3342469	+	1517	161486426	gltB	S3470	-	glutamate synthase subunit alpha
2973	 55.11	0	3342482..3343900	+	472	30064550	gltD	S3471	-	glutamate synthase subunit beta
2974	 47.90	0	3345046..3346116	+	356	30064551	-	S3473	-	IS600 orf
2975	 48.39	0	3346192..3346656	-	154	30064552	yhcH	S3474	-	hypothetical protein
2976	 57.88	+1	3346653..3347528	-	291	161486425	yhcI	S3475	-	N-acetylmannosamine kinase
2977	 57.97	+1	3347525..3348214	-	229	30064554	yhcJ	S3476	-	N-acetylmannosamine-6-phosphate 2-epimerase
2978	 54.93	0	3348262..3349752	-	496	161486424	nanT	S3477	-	putative sialic acid transporter
2979	 52.13	0	3349862..3350755	-	297	30064556	nanA	S3478	-	N-acetylneuraminate lyase
2980	 52.11	0	3350877..3351659	-	260	30064557	yhcK	S3479	-	transcriptional regulator NanR
2981	 52.54	0	3352106..3352381	+	91	30064558	-	S3480	-	IS1 orfA
2982	 52.78	0	3352300..3352803	+	167	30064559	-	S3481	-	IS1 orfB
2983	 50.95	0	3352824..3354191	+	455	30064560	yhcL	S3482	-	putative cryptic C4-dicarboxylate transporter DcuD
2984	 55.22	0	3354234..3354731	-	165	30064561	sspB	S3483	-	ClpXP protease specificity-enhancing factor
2985	 53.68	0	3354737..3355375	-	212	30064562	sspA	S3484	-	stringent starvation protein A
2986	 52.42	0	3355770..3356162	-	130	30064563	rpsI	S3485	-	30S ribosomal protein S9
2987	 50.35	0	3356178..3356606	-	142	30064564	rplM	S3486	-	50S ribosomal protein L13
2988	 52.30	0	3356825..3357952	-	375	30064565	yhcM	S3487	-	hypothetical protein
2989	 54.64	0	3358146..3358544	+	132	30064566	yhcB	S3488	-	cytochrome d ubiquinol oxidase subunit III
2990	 52.53	0	3360135..3361202	+	355	30064567	degS	S3490	-	serine endoprotease
2991	 52.08	0	3361264..3362202	-	312	30064568	mdh	S3491	-	malate dehydrogenase
2992	 48.83	0	3362637..3363107	+	156	30064569	argR	S3492	-	arginine repressor
2993	 46.98	-1	3363421..3363735	+	104	30064570	yhcN	S3493	-	hypothetical protein
2994	 42.86	-2	3363791..3364063	-	90	30064571	yhcO	S3494	-	hypothetical protein
2995	 52.49	0	3364155..3366122	-	655	30064572	yhcP	S3495	-	p-hydroxybenzoic acid efflux subunit AaeB
2996	 53.70	0	3366128..3367060	-	310	30064573	yhcQ	S3496	-	p-hydroxybenzoic acid efflux subunit AaeA
2997	 47.55	-1	3367068..3367271	-	67	161486423	yhcR	S3497	-	hypothetical protein
2998	 53.07	0	3367472..3368383	+	303	30064575	yhcS	S3498	-	putative DNA-binding transcriptional regulator
2999	 54.70	0	3368511..3369956	-	481	30064576	tldD	S3499	-	protease TldD
3000	 52.41	0	3370112..3373072	-	986	30064577	yhdP	S3500	-	hypothetical protein
3001	 52.11	0	3373980..3375449	-	489	30064578	cafA	S3502	-	ribonuclease G
3002	 53.70	0	3375439..3376032	-	197	30064579	maf	S3503	-	Maf-like protein
3003	 50.92	0	3376041..3376529	-	162	30064580	mreD	S3504	-	rod shape-determining protein MreD
3004	 53.96	0	3376736..3377632	-	298	30064581	mreC	S3505	-	cell wall structural complex MreBCD transmembrane component MreC
3005	 53.99	0	3377698..3378801	-	367	30064582	mreB	S3506	-	regulator of ftsI, penicillin binding protein 3
3006	 50.49	0	3379046..3380986	-	646	30064583	yhdA	S3507	-	regulatory protein CsrD
3007	 55.28	0	3381138..3382112	+	324	30064584	yhdH	S3508	-	putative dehydrogenase
3008	 47.06	-1	3382170..3382271	-	33	30064585	-	S3509	-	hypothetical protein
3009	 51.80	0	3383090..3383560	+	156	30064586	accB	S3510	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
3010	 53.41	0	3383571..3384920	+	449	30064587	accC	S3511	-	acetyl-CoA carboxylase biotin carboxylase subunit
3011	 53.91	0	3385029..3385271	+	80	30064588	yhdT	S3512	-	hypothetical protein
3012	 54.13	0	3385261..3386712	+	483	30064589	panF	S3513	-	sodium/panthothenate symporter
3013	 54.42	0	3386724..3387605	+	293	30064590	prmA	S3514	-	ribosomal protein L11 methyltransferase
3014	 52.08	0	3388057..3388899	+	280	30064591	yhdG	S3515	-	putative dehydrogenase
3015	 47.14	-1	3388925..3389221	+	98	30064592	fis	S3516	-	DNA-binding protein Fis
3016	 47.57	0	3389307..3390191	+	294	30064593	yhdJ	S3517	-	putative methyltransferase
3017	 53.17	0	3390469..3390972	-	167	30064594	-	S3519	-	IS1 orfB
3018	 53.26	0	3390891..3391166	-	91	30064595	-	S3520	-	IS1 orfA
3019	 48.91	0	3391510..3392427	+	305	30064596	yhdW	S3521	-	putative periplasmic binding transport protein
3020	 52.78	0	3393056..3393559	-	167	30064597	-	S3523	-	IS1 orfB
3021	 52.90	0	3393478..3393753	-	91	30064598	-	S3524	-	IS1 orfA
3022	 51.72	0	3394451..3395554	+	367	30064599	yhdY	S3526	-	putative transport system permease protein
3023	 46.77	-1	3395562..3396320	+	252	30064600	yhdZ	S3527	-	putative ATP-binding component of a transport system
3024	 45.91	-1	3401985..3402755	+	256	30064601	yrdA	S3535	-	putative transferase
3025	 49.22	0	3402731..3402988	-	85	30064602	yrdB	S3536	-	hypothetical protein
3026	 49.21	0	3402985..3403803	-	272	30064603	aroE	S3537	-	shikimate 5-dehydrogenase
3027	 52.36	0	3403808..3404380	-	190	30064604	yrdC	S3538	-	putative ribosome maturation factor
3028	 49.71	0	3404385..3404903	-	172	30064605	yrdD	S3539	-	putative DNA topoisomerase
3029	 46.62	-1	3404956..3405414	-	152	30064606	smg	S3540	-	hypothetical protein
3030	 51.02	0	3405401..3406525	-	374	30064607	smf	S3542	-	hypothetical protein
3031	 46.27	-1	3406690..3407199	+	169	30064608	def	S3543	-	peptide deformylase
3032	 52.53	0	3407214..3408161	+	315	30064609	fmt	S3544	-	methionyl-tRNA formyltransferase
3033	 50.00	0	3408207..3409496	+	429	30064610	sun	S3545	-	16S rRNA methyltransferase B
3034	 49.89	0	3409518..3410894	+	458	30064611	trkA	S3546	-	potassium transporter peripheral membrane component
3035	 50.07	0	3411075..3411749	+	224	30064612	-	S3547	-	ISSfl3 orfA
3036	 54.70	0	3411746..3412096	+	116	30064613	-	S3548	-	ISSfl3 orfB
3037	 52.37	0	3412093..3413694	+	533	30064614	-	S3549	-	ISSfl3 orfC
3038	 54.37	0	3413860..3415209	-	449	30064615	lysC	S3550	-	aspartate kinase III
3039	 51.76	0	3415734..3417383	+	549	30064616	pgi	S3551	-	glucose-6-phosphate isomerase
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.