version 1.0
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354 4061 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2899 52.98 0 3265139..3265642 + 167 30064476 - S3389 - IS1 orfB 2900 51.24 0 3265897..3266700 + 267 30064477 agaC S3391 - N-acetylgalactosamine-specific PTS system transporter subunit IIC 2901 49.49 0 3266690..3267481 + 263 30064478 agaD S3392 - N-acetylgalactosamine-specific PTS system transporter subunit IID 2902 49.74 0 3267482..3268237 + 251 30064479 agaI S3393 - galactosamine-6-phosphate isomerase 2903 52.58 0 3268746..3269249 - 167 30064480 - S3394 - IS1 ORF2 2904 52.90 0 3269168..3269443 - 91 30064481 - S3395 - IS1 orfA 2905 44.83 -1 3270079..3270774 + 231 30064482 yraI S3397 - putative chaperone 2906 52.96 0 3272539..3272961 - 140 30064483 - S3399 - IS2 orfB 2907 53.01 0 3273400..3273765 - 121 161486430 - S3401 - insertion sequence 2 OrfA protein 2908 47.89 0 3274664..3275755 + 363 30064485 yraK S3403 - putative fimbrial protein 2909 54.01 0 3275798..3276658 - 286 30064486 yraL S3404 - hypothetical protein 2910 54.34 0 3276723..3278759 + 678 30064487 yraM S3405 - putative glycosylase 2911 54.80 0 3278717..3279112 + 131 30064488 yraN S3406 - hypothetical protein 2912 50.25 0 3279132..3279722 + 196 30064489 yraO S3407 - DnaA initiator-associating protein DiaA 2913 53.99 0 3279732..3280307 + 191 30064490 yraP S3408 - hypothetical protein 2914 57.25 +1 3280421..3281461 - 346 30064491 yraQ S3409 - hypothetical protein 2915 54.77 0 3281534..3282214 - 226 30064492 yraR S3410 - hypothetical protein 2916 49.38 0 3282255..3282815 + 186 30064493 yhbO S3411 - hypothetical protein 2917 54.05 0 3282795..3283238 - 147 30064494 yhbP S3412 - hypothetical protein 2918 55.45 0 3283289..3283591 + 100 30064495 yhbQ S3413 - GIY-YIG nuclease superfamily protein 2919 55.36 0 3283578..3284081 - 167 30064496 yhbS S3414 - hypothetical protein 2920 51.62 0 3284075..3284599 - 174 30064497 yhbT S3415 - hypothetical protein 2921 57.23 +1 3284808..3285803 + 331 30064498 yhbU S3416 - putative collagenase 2922 55.86 +1 3285812..3286690 + 292 30064499 yhbV S3417 - hypothetical protein 2923 55.36 0 3286771..3287778 + 335 30064500 yhbW S3418 - hypothetical protein 2924 53.49 0 3287896..3289140 - 414 30064501 mtr S3419 - tryptophan permease 2925 55.87 +1 3289294..3291183 - 629 161486429 deaD S3420 - ATP-dependent RNA helicase DeaD 2926 48.02 0 3291363..3292247 - 294 30064503 yhbM S3421 - lipoprotein NlpI 2927 53.51 0 3292356..3294560 - 734 30064504 pnp S3422 - polynucleotide phosphorylase/polyadenylase 2928 51.48 0 3294738..3295007 - 89 30064505 rpsO S3423 - 30S ribosomal protein S15 2929 52.06 0 3295156..3296100 - 314 30064506 truB S3424 - tRNA pseudouridine synthase B 2930 52.99 0 3296100..3296501 - 133 30064507 rbfA S3425 - ribosome-binding factor A 2931 53.45 0 3296665..3299313 - 882 30064508 infB S3426 - translation initiation factor IF-2 2932 52.69 0 3299338..3300825 - 495 30064509 nusA S3427 - transcription elongation factor NusA 2933 48.57 0 3300853..3301305 - 150 161486428 yhbC S3428 - hypothetical protein 2934 52.31 0 3301936..3303279 + 447 30064511 argG S3430 - argininosuccinate synthase 2935 47.62 0 3303287..3303769 - 160 30064512 yhbX S3431 - putative alkaline phosphatase I 2936 50.15 0 3305473..3305805 - 110 30064513 secG S3433 - preprotein translocase subunit SecG 2937 54.48 0 3306033..3307370 - 445 30064514 glmM S3434 - phosphoglucosamine mutase 2938 51.59 0 3307363..3308211 - 282 161486427 folP S3435 - dihydropteroate synthase 2939 53.44 0 3308301..3310235 - 644 30064516 hflB S3436 - ATP-dependent metalloprotease 2940 50.16 0 3310335..3310964 - 209 30064517 rrmJ S3437 - 23S rRNA methyltransferase J 2941 48.64 0 3311090..3311383 + 97 30064518 yhbY S3438 - RNA-binding protein YhbY 2942 48.64 0 3311539..3312015 - 158 30064519 greA S3439 - transcription elongation factor GreA 2943 53.14 0 3312263..3313696 + 477 30064520 dacB S3440 - D-alanyl-D-alanine carboxypeptidase/endopeptidase 2944 52.77 0 3313882..3315054 - 390 30064521 obgE S3441 - GTPase ObgE 2945 52.69 0 3315070..3316035 - 321 30064522 yhbE S3442 - hypothetical protein 2946 49.61 0 3316162..3316419 - 85 30064523 rpmA S3443 - 50S ribosomal protein L27 2947 48.40 0 3316440..3316751 - 103 30064524 rplU S3444 - 50S ribosomal protein L21 2948 52.67 0 3317009..3317980 + 323 30064525 ispB S3445 - octaprenyl diphosphate synthase 2949 49.46 0 3318207..3318485 + 92 30064526 nlp S3446 - DNA-binding transcriptional regulator Nlp 2950 53.33 0 3318533..3319792 - 419 30064527 murA S3447 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2951 50.00 0 3319847..3320116 - 89 30064528 yrbA S3448 - hypothetical protein 2952 52.56 0 3320261..3320650 - 129 30064529 yrbB S3449 - hypothetical protein 2953 52.04 0 3320554..3321189 - 211 30064530 yrbC S3450 - hypothetical protein 2954 49.82 0 3321208..3321759 - 183 30064531 vpsC S3451 - cytoplasmic membrane protein 2955 55.43 0 3321764..3322546 - 260 30064532 vpsB S3452 - integral membrane protein 2956 54.32 0 3322554..3323363 - 269 30064533 vpsA S3453 - putative ABC transporter ATP-binding protein YrbF 2957 51.86 0 3323573..3324538 + 321 30064534 yrbG S3454 - putative calcium/sodium:proton antiporter 2958 52.18 0 3324552..3325538 + 328 30064535 yrbH S3455 - D-arabinose 5-phosphate isomerase 2959 52.38 0 3325559..3326125 + 188 30064536 yrbI S3456 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 2960 46.35 -1 3326122..3326697 + 191 30064537 yrbK S3457 - hypothetical protein 2961 49.64 0 3326666..3327223 + 185 30064538 yhbN S3458 - hypothetical protein 2962 54.27 0 3327230..3327955 + 241 30064539 yhbG S3459 - putative ABC transporter ATP-binding protein YhbG 2963 53.00 0 3328003..3329436 + 477 30064540 rpoN S3460 - RNA polymerase factor sigma-54 2964 44.44 -1 3329459..3329746 + 95 30064541 yhbH S3461 - putative sigma(54) modulation protein 2965 51.83 0 3329864..3330355 + 163 30064542 ptsN S3462 - sugar-specific enzyme IIA component of PTS 2966 52.05 0 3330401..3331255 + 284 30064543 yhbJ S3463 - hypothetical protein 2967 49.08 0 3331252..3331524 + 90 30064544 ptsO S3464 - phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 2968 51.34 0 3331737..3332369 + 210 30064545 yrbL S3465 - hypothetical protein 2969 52.75 0 3333090..3333743 - 217 30064546 yhbL S3467 - isoprenoid biosynthesis protein 2970 50.62 0 3333973..3336309 - 778 30064547 arcB S3468 - aerobic respiration control sensor protein ArcB 2971 55.70 +1 3336405..3337334 - 309 30064548 yhcC S3469 - hypothetical protein 2972 57.09 +1 3337916..3342469 + 1517 161486426 gltB S3470 - glutamate synthase subunit alpha 2973 55.11 0 3342482..3343900 + 472 30064550 gltD S3471 - glutamate synthase subunit beta 2974 47.90 0 3345046..3346116 + 356 30064551 - S3473 - IS600 orf 2975 48.39 0 3346192..3346656 - 154 30064552 yhcH S3474 - hypothetical protein 2976 57.88 +1 3346653..3347528 - 291 161486425 yhcI S3475 - N-acetylmannosamine kinase 2977 57.97 +1 3347525..3348214 - 229 30064554 yhcJ S3476 - N-acetylmannosamine-6-phosphate 2-epimerase 2978 54.93 0 3348262..3349752 - 496 161486424 nanT S3477 - putative sialic acid transporter 2979 52.13 0 3349862..3350755 - 297 30064556 nanA S3478 - N-acetylneuraminate lyase 2980 52.11 0 3350877..3351659 - 260 30064557 yhcK S3479 - transcriptional regulator NanR 2981 52.54 0 3352106..3352381 + 91 30064558 - S3480 - IS1 orfA 2982 52.78 0 3352300..3352803 + 167 30064559 - S3481 - IS1 orfB 2983 50.95 0 3352824..3354191 + 455 30064560 yhcL S3482 - putative cryptic C4-dicarboxylate transporter DcuD 2984 55.22 0 3354234..3354731 - 165 30064561 sspB S3483 - ClpXP protease specificity-enhancing factor 2985 53.68 0 3354737..3355375 - 212 30064562 sspA S3484 - stringent starvation protein A 2986 52.42 0 3355770..3356162 - 130 30064563 rpsI S3485 - 30S ribosomal protein S9 2987 50.35 0 3356178..3356606 - 142 30064564 rplM S3486 - 50S ribosomal protein L13 2988 52.30 0 3356825..3357952 - 375 30064565 yhcM S3487 - hypothetical protein 2989 54.64 0 3358146..3358544 + 132 30064566 yhcB S3488 - cytochrome d ubiquinol oxidase subunit III 2990 52.53 0 3360135..3361202 + 355 30064567 degS S3490 - serine endoprotease 2991 52.08 0 3361264..3362202 - 312 30064568 mdh S3491 - malate dehydrogenase 2992 48.83 0 3362637..3363107 + 156 30064569 argR S3492 - arginine repressor 2993 46.98 -1 3363421..3363735 + 104 30064570 yhcN S3493 - hypothetical protein 2994 42.86 -2 3363791..3364063 - 90 30064571 yhcO S3494 - hypothetical protein 2995 52.49 0 3364155..3366122 - 655 30064572 yhcP S3495 - p-hydroxybenzoic acid efflux subunit AaeB 2996 53.70 0 3366128..3367060 - 310 30064573 yhcQ S3496 - p-hydroxybenzoic acid efflux subunit AaeA 2997 47.55 -1 3367068..3367271 - 67 161486423 yhcR S3497 - hypothetical protein 2998 53.07 0 3367472..3368383 + 303 30064575 yhcS S3498 - putative DNA-binding transcriptional regulator 51.60 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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