IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2835	 57.00	+1	3187231..3188244	-	337	30064412	ygjD	S3310	-	O-sialoglycoprotein endopeptidase
2836	 51.85	0	3188482..3188697	+	71	30064413	rpsU	S3311	-	30S ribosomal protein S21
2837	 52.29	0	3188808..3190553	+	581	30064414	dnaG	S3312	-	DNA primase
2838	 53.04	0	3190748..3192574	+	608	30064415	rpoD	S3313	-	RNA polymerase sigma factor RpoD
2839	 54.33	0	3192746..3194074	+	442	30064416	-	S3314	-	IS4 orf
2840	 53.69	0	3195888..3196511	+	207	30064417	yqjI	S3318	-	hypothetical protein
2841	 55.08	0	3198576..3199982	+	468	161486434	ygjG	S3320	-	putrescine--2-oxoglutarate aminotransferase
2842	 51.32	0	3200573..3201556	+	327	30064419	ebgR	S3322	-	DNA-binding transcriptional repressor EbgR
2843	 54.49	0	3201739..3204825	+	1028	30064420	ebgA	S3323	-	cryptic beta-D-galactosidase subunit alpha
2844	 44.89	-1	3204822..3205271	+	149	30064421	ebgC	S3324	-	cryptic beta-D-galactosidase subunit beta
2845	 49.86	0	3205334..3206767	+	477	30064422	ygjI	S3325	-	putative oxidoreductase
2846	 54.42	0	3207989..3210340	+	783	30064423	ygjK	S3327	-	glycosyl hydrolase
2847	 57.50	+1	3210566..3212584	+	672	30064424	ygjL	S3328	-	putative NADPH dehydrogenase
2848	 48.44	0	3212629..3213045	-	138	30064425	ygjM	S3329	-	hypothetical protein
2849	 38.41	-2	3213042..3213356	-	104	30064426	ygjN	S3330	-	hypothetical protein
2850	 53.56	0	3213641..3214777	-	378	30064427	ygjO	S3331	-	putative enzyme
2851	 50.74	0	3214826..3215365	+	179	30064428	ygjP	S3332	-	hypothetical protein
2852	 51.95	0	3215442..3216134	+	230	30064429	ygjQ	S3333	-	hypothetical protein
2853	 52.61	0	3216195..3217211	+	338	30064430	ygjR	S3334	-	hypothetical protein
2854	 54.14	0	3217482..3218447	+	321	30064431	ygjT	S3335	-	putative transport protein
2855	 54.86	0	3219032..3220276	+	414	30064432	ygjU	S3336	-	serine/threonine transporter SstT
2856	 50.00	0	3220281..3220832	-	183	30064433	ygjV	S3337	-	hypothetical protein
2857	 54.23	0	3220915..3222402	-	495	30064434	uxaA	S3338	-	altronate hydrolase
2858	 54.00	0	3222417..3223829	-	470	30064435	uxaC	S3339	-	glucuronate isomerase
2859	 54.35	0	3224314..3225612	+	432	30064436	exuT	S3340	-	transport protein of hexuronates
2860	 49.92	0	3225700..3226332	-	210	30064437	-	S3341	-	hypothetical protein
2861	 47.84	0	3226785..3228776	-	663	30064438	-	S3342	-	hypothetical protein
2862	 52.90	0	3228942..3229217	+	91	30064439	-	S3343	-	IS1 orfA
2863	 52.98	0	3229136..3229639	+	167	30064440	-	S3344	-	IS1 orfB
2864	 49.81	0	3229747..3230523	+	258	30064441	exuR	S3345	-	DNA-binding transcriptional repressor ExuR
2865	 50.38	0	3230868..3231530	+	220	30064442	yqjA	S3346	-	hypothetical protein
2866	 54.20	0	3231549..3231917	+	122	30064443	yqjB	S3347	-	hypothetical protein
2867	 54.25	0	3232456..3232761	+	101	30064444	yqjD	S3349	-	hypothetical protein
2868	 52.84	0	3232764..3233168	+	134	30064445	yqjE	S3350	-	hypothetical protein
2869	 56.00	+1	3233158..3233457	+	99	30064446	-	S3351	-	hypothetical protein
2870	 51.57	0	3234009..3234995	+	328	30064447	yqjG	S3353	-	putative transferase
2871	 51.22	0	3235288..3235656	+	122	30064448	yhaH	S3354	-	putative cytochrome
2872	 55.74	+1	3235863..3236759	-	298	30064449	yhaJ	S3356	-	putative LYSR-type transcriptional regulator
2873	 52.85	0	3236864..3237565	+	233	30064450	yhaK	S3357	-	hypothetical protein
2874	 52.12	0	3237588..3237752	+	54	30064451	yhaL	S3358	-	hypothetical protein
2875	 56.08	+1	3237964..3238530	-	188	30064452	yhaM	S3359	-	hypothetical protein
2876	 56.54	+1	3238466..3239275	-	269	30064453	yhaN	S3360	-	hypothetical protein
2877	 50.23	0	3239303..3240634	-	443	30064454	yhaO	S3361	-	putative transport system permease protein
2878	 53.41	0	3240909..3242273	-	454	30064455	-	S3363	-	putative L-serine deaminase
2879	 52.56	0	3242345..3242734	-	129	30064456	yhaR	S3365	-	hypothetical protein
2880	 53.12	0	3242748..3245042	-	764	30064457	tdcE	S3366	-	formate acetyltransferase 3
2881	 47.58	0	3245076..3246296	-	406	161486433	tdcD	S3367	-	propionate/acetate kinase
2882	 49.62	0	3246310..3247641	-	443	30064459	tdcC	S3368	-	threonine/serine transporter TdcC
2883	 46.06	-1	3247663..3248652	-	329	30064460	tdcB	S3369	-	threonine dehydratase
2884	 42.17	-2	3248751..3249689	-	312	30064461	tdcA	S3370	-	DNA-binding transcriptional activator TdcA
2885	 31.88	-2	3249879..3250223	+	114	30064462	tdcR	S3371	-	DNA-binding transcriptional activator TdcR
2886	 47.27	-1	3252275..3252439	+	54	30064463	-	S3374	-	hypothetical protein
2887	 53.40	0	3253237..3254382	-	381	161486432	yhaD	S3376	-	glycerate kinase I
2888	 52.97	0	3254479..3255369	-	296	161486431	garR	S3377	-	tartronate semialdehyde reductase
2889	 50.64	0	3256185..3257519	-	444	30064466	yhaU	S3379	-	putative transport protein
2890	 52.93	0	3257894..3259465	+	523	30064467	yhaG	S3380	-	putative hydrolase
2891	 52.24	0	3259517..3260341	-	274	30064468	agaR	S3381	-	DNA-binding transcriptional regulator AgaR
2892	 55.04	0	3260590..3261870	+	426	30064469	agaZ	S3382	-	putative tagatose 6-phosphate kinase 2
2893	 50.39	0	3261857..3262366	+	169	30064470	agaV	S3383	-	N-acetylgalactosamine-specific PTS system transporter subunit IIB
2894	 55.77	+1	3262377..3263156	+	259	30064471	agaW	S3384	-	N-acetylgalactosameine-specific IIC component 2
2895	 52.47	0	3263146..3263955	+	269	30064472	agaE	S3385	-	putative transport enzyme subunit
2896	 53.10	0	3264042..3264476	+	144	30064473	agaF	S3386	-	putative transport enzyme subunit
2897	 57.21	+1	3264473..3264916	+	147	30064474	agaA	S3387	-	N-acetylglucosamine-6-phosphate deacetylase
2898	 52.90	0	3264945..3265220	+	91	30064475	-	S3388	-	IS1 orfA
2899	 52.98	0	3265139..3265642	+	167	30064476	-	S3389	-	IS1 orfB
2900	 51.24	0	3265897..3266700	+	267	30064477	agaC	S3391	-	N-acetylgalactosamine-specific PTS system transporter subunit IIC
2901	 49.49	0	3266690..3267481	+	263	30064478	agaD	S3392	-	N-acetylgalactosamine-specific PTS system transporter subunit IID
2902	 49.74	0	3267482..3268237	+	251	30064479	agaI	S3393	-	galactosamine-6-phosphate isomerase
2903	 52.58	0	3268746..3269249	-	167	30064480	-	S3394	-	IS1 ORF2
2904	 52.90	0	3269168..3269443	-	91	30064481	-	S3395	-	IS1 orfA
2905	 44.83	-1	3270079..3270774	+	231	30064482	yraI	S3397	-	putative chaperone
2906	 52.96	0	3272539..3272961	-	140	30064483	-	S3399	-	IS2 orfB
2907	 53.01	0	3273400..3273765	-	121	161486430	-	S3401	-	insertion sequence 2 OrfA protein
2908	 47.89	0	3274664..3275755	+	363	30064485	yraK	S3403	-	putative fimbrial protein
2909	 54.01	0	3275798..3276658	-	286	30064486	yraL	S3404	-	hypothetical protein
2910	 54.34	0	3276723..3278759	+	678	30064487	yraM	S3405	-	putative glycosylase
2911	 54.80	0	3278717..3279112	+	131	30064488	yraN	S3406	-	hypothetical protein
2912	 50.25	0	3279132..3279722	+	196	30064489	yraO	S3407	-	DnaA initiator-associating protein DiaA
2913	 53.99	0	3279732..3280307	+	191	30064490	yraP	S3408	-	hypothetical protein
2914	 57.25	+1	3280421..3281461	-	346	30064491	yraQ	S3409	-	hypothetical protein
2915	 54.77	0	3281534..3282214	-	226	30064492	yraR	S3410	-	hypothetical protein
2916	 49.38	0	3282255..3282815	+	186	30064493	yhbO	S3411	-	hypothetical protein
2917	 54.05	0	3282795..3283238	-	147	30064494	yhbP	S3412	-	hypothetical protein
2918	 55.45	0	3283289..3283591	+	100	30064495	yhbQ	S3413	-	GIY-YIG nuclease superfamily protein
2919	 55.36	0	3283578..3284081	-	167	30064496	yhbS	S3414	-	hypothetical protein
2920	 51.62	0	3284075..3284599	-	174	30064497	yhbT	S3415	-	hypothetical protein
2921	 57.23	+1	3284808..3285803	+	331	30064498	yhbU	S3416	-	putative collagenase
2922	 55.86	+1	3285812..3286690	+	292	30064499	yhbV	S3417	-	hypothetical protein
2923	 55.36	0	3286771..3287778	+	335	30064500	yhbW	S3418	-	hypothetical protein
2924	 53.49	0	3287896..3289140	-	414	30064501	mtr	S3419	-	tryptophan permease
2925	 55.87	+1	3289294..3291183	-	629	161486429	deaD	S3420	-	ATP-dependent RNA helicase DeaD
2926	 48.02	0	3291363..3292247	-	294	30064503	yhbM	S3421	-	lipoprotein NlpI
2927	 53.51	0	3292356..3294560	-	734	30064504	pnp	S3422	-	polynucleotide phosphorylase/polyadenylase
2928	 51.48	0	3294738..3295007	-	89	30064505	rpsO	S3423	-	30S ribosomal protein S15
2929	 52.06	0	3295156..3296100	-	314	30064506	truB	S3424	-	tRNA pseudouridine synthase B
2930	 52.99	0	3296100..3296501	-	133	30064507	rbfA	S3425	-	ribosome-binding factor A
2931	 53.45	0	3296665..3299313	-	882	30064508	infB	S3426	-	translation initiation factor IF-2
2932	 52.69	0	3299338..3300825	-	495	30064509	nusA	S3427	-	transcription elongation factor NusA
2933	 48.57	0	3300853..3301305	-	150	161486428	yhbC	S3428	-	hypothetical protein
2934	 52.31	0	3301936..3303279	+	447	30064511	argG	S3430	-	argininosuccinate synthase
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.