IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2806	 48.70	0	3158657..3159079	-	140	30064383	yqiB	S3278	-	hypothetical protein
2807	 50.63	0	3159080..3159709	-	209	30064384	nudF	S3279	-	ADP-ribose pyrophosphatase NudF
2808	 51.42	0	3159914..3161395	+	493	30064385	tolC	S3280	-	outer membrane channel protein
2809	 52.87	0	3161395..3161655	+	86	30064386	ygiA	S3281	-	hypothetical protein
2810	 56.10	+1	3161543..3162214	+	223	161486437	ygiB	S3282	-	hypothetical protein
2811	 50.47	0	3162220..3163380	+	386	30064388	ygiC	S3283	-	putative synthetase/amidase
2812	 53.68	0	3163418..3164233	-	271	30064389	ygiD	S3284	-	hypothetical protein
2813	 53.36	0	3164349..3165122	+	257	30064390	ygiE	S3285	-	zinc transporter ZupT
2814	 52.75	0	3165611..3166264	-	217	30064391	ribB	S3286	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
2815	 48.15	0	3166578..3166928	+	116	30064392	-	S3287	-	hypothetical protein
2816	 52.73	0	3167184..3167549	+	121	161486436	-	S3288	-	insertion sequence 2 OrfA protein
2817	 55.99	+1	3167507..3168358	+	283	161486435	-	S3289	-	insertion sequence 2 OrfB protein
2818	 52.90	0	3168409..3168684	+	91	30064395	-	S3290	-	IS1 orfA
2819	 52.98	0	3168603..3169106	+	167	30064396	-	S3291	-	IS1 orfB
2820	 49.28	0	3169116..3169391	+	91	30064397	-	S3292	-	IS4 orf
2821	 45.77	-1	3169778..3169978	-	66	30064398	glgS	S3294	-	glycogen synthesis protein GlgS
2822	 54.00	0	3170300..3170599	+	99	30064399	-	S3295	-	IS1 orfA
2823	 56.42	+1	3173108..3174541	-	477	30064400	-	S3298	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
2824	 55.30	0	3174589..3177429	-	946	30064401	glnE	S3299	-	bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase
2825	 54.69	0	3177452..3178753	-	433	30064402	ygiF	S3300	-	hypothetical protein
2826	 52.33	0	3178995..3179615	+	206	30064403	ygiM	S3301	-	putative signal transduction protein
2827	 56.17	+1	3179679..3180917	+	412	30064404	cca	S3302	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
2828	 52.55	0	3181079..3181900	-	273	30064405	uppP	S3303	-	undecaprenyl pyrophosphate phosphatase
2829	 50.68	0	3181991..3182359	-	122	30064406	folB	S3304	-	bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase
2830	 53.40	0	3182464..3183081	+	205	30064407	ygiH	S3305	-	putative glycerol-3-phosphate acyltransferase PlsY
2831	 49.10	0	3183024..3184025	-	333	30064408	ygiP	S3306	-	transcriptional activator TtdR
2832	 53.33	0	3184235..3185044	+	269	30064409	ttdA	S3307	-	tartrate dehydratase subunit alpha
2833	 53.30	0	3185072..3185677	+	201	30064410	ttdB	S3308	-	L(+)-tartrate dehydratase subunit beta
2834	 55.53	0	3185725..3187188	+	487	30064411	ygjE	S3309	-	hypothetical protein
2835	 57.00	+1	3187231..3188244	-	337	30064412	ygjD	S3310	-	O-sialoglycoprotein endopeptidase
2836	 51.85	0	3188482..3188697	+	71	30064413	rpsU	S3311	-	30S ribosomal protein S21
2837	 52.29	0	3188808..3190553	+	581	30064414	dnaG	S3312	-	DNA primase
2838	 53.04	0	3190748..3192574	+	608	30064415	rpoD	S3313	-	RNA polymerase sigma factor RpoD
2839	 54.33	0	3192746..3194074	+	442	30064416	-	S3314	-	IS4 orf
2840	 53.69	0	3195888..3196511	+	207	30064417	yqjI	S3318	-	hypothetical protein
2841	 55.08	0	3198576..3199982	+	468	161486434	ygjG	S3320	-	putrescine--2-oxoglutarate aminotransferase
2842	 51.32	0	3200573..3201556	+	327	30064419	ebgR	S3322	-	DNA-binding transcriptional repressor EbgR
2843	 54.49	0	3201739..3204825	+	1028	30064420	ebgA	S3323	-	cryptic beta-D-galactosidase subunit alpha
2844	 44.89	-1	3204822..3205271	+	149	30064421	ebgC	S3324	-	cryptic beta-D-galactosidase subunit beta
2845	 49.86	0	3205334..3206767	+	477	30064422	ygjI	S3325	-	putative oxidoreductase
2846	 54.42	0	3207989..3210340	+	783	30064423	ygjK	S3327	-	glycosyl hydrolase
2847	 57.50	+1	3210566..3212584	+	672	30064424	ygjL	S3328	-	putative NADPH dehydrogenase
2848	 48.44	0	3212629..3213045	-	138	30064425	ygjM	S3329	-	hypothetical protein
2849	 38.41	-2	3213042..3213356	-	104	30064426	ygjN	S3330	-	hypothetical protein
2850	 53.56	0	3213641..3214777	-	378	30064427	ygjO	S3331	-	putative enzyme
2851	 50.74	0	3214826..3215365	+	179	30064428	ygjP	S3332	-	hypothetical protein
2852	 51.95	0	3215442..3216134	+	230	30064429	ygjQ	S3333	-	hypothetical protein
2853	 52.61	0	3216195..3217211	+	338	30064430	ygjR	S3334	-	hypothetical protein
2854	 54.14	0	3217482..3218447	+	321	30064431	ygjT	S3335	-	putative transport protein
2855	 54.86	0	3219032..3220276	+	414	30064432	ygjU	S3336	-	serine/threonine transporter SstT
2856	 50.00	0	3220281..3220832	-	183	30064433	ygjV	S3337	-	hypothetical protein
2857	 54.23	0	3220915..3222402	-	495	30064434	uxaA	S3338	-	altronate hydrolase
2858	 54.00	0	3222417..3223829	-	470	30064435	uxaC	S3339	-	glucuronate isomerase
2859	 54.35	0	3224314..3225612	+	432	30064436	exuT	S3340	-	transport protein of hexuronates
2860	 49.92	0	3225700..3226332	-	210	30064437	-	S3341	-	hypothetical protein
2861	 47.84	0	3226785..3228776	-	663	30064438	-	S3342	-	hypothetical protein
2862	 52.90	0	3228942..3229217	+	91	30064439	-	S3343	-	IS1 orfA
2863	 52.98	0	3229136..3229639	+	167	30064440	-	S3344	-	IS1 orfB
2864	 49.81	0	3229747..3230523	+	258	30064441	exuR	S3345	-	DNA-binding transcriptional repressor ExuR
2865	 50.38	0	3230868..3231530	+	220	30064442	yqjA	S3346	-	hypothetical protein
2866	 54.20	0	3231549..3231917	+	122	30064443	yqjB	S3347	-	hypothetical protein
2867	 54.25	0	3232456..3232761	+	101	30064444	yqjD	S3349	-	hypothetical protein
2868	 52.84	0	3232764..3233168	+	134	30064445	yqjE	S3350	-	hypothetical protein
2869	 56.00	+1	3233158..3233457	+	99	30064446	-	S3351	-	hypothetical protein
2870	 51.57	0	3234009..3234995	+	328	30064447	yqjG	S3353	-	putative transferase
2871	 51.22	0	3235288..3235656	+	122	30064448	yhaH	S3354	-	putative cytochrome
2872	 55.74	+1	3235863..3236759	-	298	30064449	yhaJ	S3356	-	putative LYSR-type transcriptional regulator
2873	 52.85	0	3236864..3237565	+	233	30064450	yhaK	S3357	-	hypothetical protein
2874	 52.12	0	3237588..3237752	+	54	30064451	yhaL	S3358	-	hypothetical protein
2875	 56.08	+1	3237964..3238530	-	188	30064452	yhaM	S3359	-	hypothetical protein
2876	 56.54	+1	3238466..3239275	-	269	30064453	yhaN	S3360	-	hypothetical protein
2877	 50.23	0	3239303..3240634	-	443	30064454	yhaO	S3361	-	putative transport system permease protein
2878	 53.41	0	3240909..3242273	-	454	30064455	-	S3363	-	putative L-serine deaminase
2879	 52.56	0	3242345..3242734	-	129	30064456	yhaR	S3365	-	hypothetical protein
2880	 53.12	0	3242748..3245042	-	764	30064457	tdcE	S3366	-	formate acetyltransferase 3
2881	 47.58	0	3245076..3246296	-	406	161486433	tdcD	S3367	-	propionate/acetate kinase
2882	 49.62	0	3246310..3247641	-	443	30064459	tdcC	S3368	-	threonine/serine transporter TdcC
2883	 46.06	-1	3247663..3248652	-	329	30064460	tdcB	S3369	-	threonine dehydratase
2884	 42.17	-2	3248751..3249689	-	312	30064461	tdcA	S3370	-	DNA-binding transcriptional activator TdcA
2885	 31.88	-2	3249879..3250223	+	114	30064462	tdcR	S3371	-	DNA-binding transcriptional activator TdcR
2886	 47.27	-1	3252275..3252439	+	54	30064463	-	S3374	-	hypothetical protein
2887	 53.40	0	3253237..3254382	-	381	161486432	yhaD	S3376	-	glycerate kinase I
2888	 52.97	0	3254479..3255369	-	296	161486431	garR	S3377	-	tartronate semialdehyde reductase
2889	 50.64	0	3256185..3257519	-	444	30064466	yhaU	S3379	-	putative transport protein
2890	 52.93	0	3257894..3259465	+	523	30064467	yhaG	S3380	-	putative hydrolase
2891	 52.24	0	3259517..3260341	-	274	30064468	agaR	S3381	-	DNA-binding transcriptional regulator AgaR
2892	 55.04	0	3260590..3261870	+	426	30064469	agaZ	S3382	-	putative tagatose 6-phosphate kinase 2
2893	 50.39	0	3261857..3262366	+	169	30064470	agaV	S3383	-	N-acetylgalactosamine-specific PTS system transporter subunit IIB
2894	 55.77	+1	3262377..3263156	+	259	30064471	agaW	S3384	-	N-acetylgalactosameine-specific IIC component 2
2895	 52.47	0	3263146..3263955	+	269	30064472	agaE	S3385	-	putative transport enzyme subunit
2896	 53.10	0	3264042..3264476	+	144	30064473	agaF	S3386	-	putative transport enzyme subunit
2897	 57.21	+1	3264473..3264916	+	147	30064474	agaA	S3387	-	N-acetylglucosamine-6-phosphate deacetylase
2898	 52.90	0	3264945..3265220	+	91	30064475	-	S3388	-	IS1 orfA
2899	 52.98	0	3265139..3265642	+	167	30064476	-	S3389	-	IS1 orfB
2900	 51.24	0	3265897..3266700	+	267	30064477	agaC	S3391	-	N-acetylgalactosamine-specific PTS system transporter subunit IIC
2901	 49.49	0	3266690..3267481	+	263	30064478	agaD	S3392	-	N-acetylgalactosamine-specific PTS system transporter subunit IID
2902	 49.74	0	3267482..3268237	+	251	30064479	agaI	S3393	-	galactosamine-6-phosphate isomerase
2903	 52.58	0	3268746..3269249	-	167	30064480	-	S3394	-	IS1 ORF2
2904	 52.90	0	3269168..3269443	-	91	30064481	-	S3395	-	IS1 orfA
2905	 44.83	-1	3270079..3270774	+	231	30064482	yraI	S3397	-	putative chaperone
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.