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Shigella flexneri 2a str. 2457T, complete genome - 1..4599354 4061 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2798 51.36 0 3151702..3152361 + 219 30064375 ygiX S3270 - DNA-binding transcriptional regulator QseB 2799 52.55 0 3152358..3153632 + 424 30064376 ygiY S3271 - sensor protein QseC 2800 34.23 -2 3153678..3154010 - 110 30064377 - S3272 - hypothetical protein 2801 49.66 0 3154329..3154910 + 193 30064378 mdaB S3273 - modulator of drug activity B 2802 51.43 0 3154941..3155255 + 104 30064379 ygiN S3274 - hypothetical protein 2803 53.88 0 3155303..3157195 - 630 30064380 parE S3275 - DNA topoisomerase IV subunit B 2804 53.61 0 3157224..3157805 - 193 30064381 yqiA S3276 - esterase YqiA 2805 56.28 +1 3157805..3158632 - 275 30064382 icc S3277 - cyclic 3',5'-adenosine monophosphate phosphodiesterase 2806 48.70 0 3158657..3159079 - 140 30064383 yqiB S3278 - hypothetical protein 2807 50.63 0 3159080..3159709 - 209 30064384 nudF S3279 - ADP-ribose pyrophosphatase NudF 2808 51.42 0 3159914..3161395 + 493 30064385 tolC S3280 - outer membrane channel protein 2809 52.87 0 3161395..3161655 + 86 30064386 ygiA S3281 - hypothetical protein 2810 56.10 +1 3161543..3162214 + 223 161486437 ygiB S3282 - hypothetical protein 2811 50.47 0 3162220..3163380 + 386 30064388 ygiC S3283 - putative synthetase/amidase 2812 53.68 0 3163418..3164233 - 271 30064389 ygiD S3284 - hypothetical protein 2813 53.36 0 3164349..3165122 + 257 30064390 ygiE S3285 - zinc transporter ZupT 2814 52.75 0 3165611..3166264 - 217 30064391 ribB S3286 - 3,4-dihydroxy-2-butanone 4-phosphate synthase 2815 48.15 0 3166578..3166928 + 116 30064392 - S3287 - hypothetical protein 2816 52.73 0 3167184..3167549 + 121 161486436 - S3288 - insertion sequence 2 OrfA protein 2817 55.99 +1 3167507..3168358 + 283 161486435 - S3289 - insertion sequence 2 OrfB protein 2818 52.90 0 3168409..3168684 + 91 30064395 - S3290 - IS1 orfA 2819 52.98 0 3168603..3169106 + 167 30064396 - S3291 - IS1 orfB 2820 49.28 0 3169116..3169391 + 91 30064397 - S3292 - IS4 orf 2821 45.77 -1 3169778..3169978 - 66 30064398 glgS S3294 - glycogen synthesis protein GlgS 2822 54.00 0 3170300..3170599 + 99 30064399 - S3295 - IS1 orfA 2823 56.42 +1 3173108..3174541 - 477 30064400 - S3298 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 2824 55.30 0 3174589..3177429 - 946 30064401 glnE S3299 - bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 2825 54.69 0 3177452..3178753 - 433 30064402 ygiF S3300 - hypothetical protein 2826 52.33 0 3178995..3179615 + 206 30064403 ygiM S3301 - putative signal transduction protein 2827 56.17 +1 3179679..3180917 + 412 30064404 cca S3302 - multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 2828 52.55 0 3181079..3181900 - 273 30064405 uppP S3303 - undecaprenyl pyrophosphate phosphatase 2829 50.68 0 3181991..3182359 - 122 30064406 folB S3304 - bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase 2830 53.40 0 3182464..3183081 + 205 30064407 ygiH S3305 - putative glycerol-3-phosphate acyltransferase PlsY 2831 49.10 0 3183024..3184025 - 333 30064408 ygiP S3306 - transcriptional activator TtdR 2832 53.33 0 3184235..3185044 + 269 30064409 ttdA S3307 - tartrate dehydratase subunit alpha 2833 53.30 0 3185072..3185677 + 201 30064410 ttdB S3308 - L(+)-tartrate dehydratase subunit beta 2834 55.53 0 3185725..3187188 + 487 30064411 ygjE S3309 - hypothetical protein 2835 57.00 +1 3187231..3188244 - 337 30064412 ygjD S3310 - O-sialoglycoprotein endopeptidase 2836 51.85 0 3188482..3188697 + 71 30064413 rpsU S3311 - 30S ribosomal protein S21 2837 52.29 0 3188808..3190553 + 581 30064414 dnaG S3312 - DNA primase 2838 53.04 0 3190748..3192574 + 608 30064415 rpoD S3313 - RNA polymerase sigma factor RpoD 2839 54.33 0 3192746..3194074 + 442 30064416 - S3314 - IS4 orf 2840 53.69 0 3195888..3196511 + 207 30064417 yqjI S3318 - hypothetical protein 2841 55.08 0 3198576..3199982 + 468 161486434 ygjG S3320 - putrescine--2-oxoglutarate aminotransferase 2842 51.32 0 3200573..3201556 + 327 30064419 ebgR S3322 - DNA-binding transcriptional repressor EbgR 2843 54.49 0 3201739..3204825 + 1028 30064420 ebgA S3323 - cryptic beta-D-galactosidase subunit alpha 2844 44.89 -1 3204822..3205271 + 149 30064421 ebgC S3324 - cryptic beta-D-galactosidase subunit beta 2845 49.86 0 3205334..3206767 + 477 30064422 ygjI S3325 - putative oxidoreductase 2846 54.42 0 3207989..3210340 + 783 30064423 ygjK S3327 - glycosyl hydrolase 2847 57.50 +1 3210566..3212584 + 672 30064424 ygjL S3328 - putative NADPH dehydrogenase 2848 48.44 0 3212629..3213045 - 138 30064425 ygjM S3329 - hypothetical protein 2849 38.41 -2 3213042..3213356 - 104 30064426 ygjN S3330 - hypothetical protein 2850 53.56 0 3213641..3214777 - 378 30064427 ygjO S3331 - putative enzyme 2851 50.74 0 3214826..3215365 + 179 30064428 ygjP S3332 - hypothetical protein 2852 51.95 0 3215442..3216134 + 230 30064429 ygjQ S3333 - hypothetical protein 2853 52.61 0 3216195..3217211 + 338 30064430 ygjR S3334 - hypothetical protein 2854 54.14 0 3217482..3218447 + 321 30064431 ygjT S3335 - putative transport protein 2855 54.86 0 3219032..3220276 + 414 30064432 ygjU S3336 - serine/threonine transporter SstT 2856 50.00 0 3220281..3220832 - 183 30064433 ygjV S3337 - hypothetical protein 2857 54.23 0 3220915..3222402 - 495 30064434 uxaA S3338 - altronate hydrolase 2858 54.00 0 3222417..3223829 - 470 30064435 uxaC S3339 - glucuronate isomerase 2859 54.35 0 3224314..3225612 + 432 30064436 exuT S3340 - transport protein of hexuronates 2860 49.92 0 3225700..3226332 - 210 30064437 - S3341 - hypothetical protein 2861 47.84 0 3226785..3228776 - 663 30064438 - S3342 - hypothetical protein 2862 52.90 0 3228942..3229217 + 91 30064439 - S3343 - IS1 orfA 2863 52.98 0 3229136..3229639 + 167 30064440 - S3344 - IS1 orfB 2864 49.81 0 3229747..3230523 + 258 30064441 exuR S3345 - DNA-binding transcriptional repressor ExuR 2865 50.38 0 3230868..3231530 + 220 30064442 yqjA S3346 - hypothetical protein 2866 54.20 0 3231549..3231917 + 122 30064443 yqjB S3347 - hypothetical protein 2867 54.25 0 3232456..3232761 + 101 30064444 yqjD S3349 - hypothetical protein 2868 52.84 0 3232764..3233168 + 134 30064445 yqjE S3350 - hypothetical protein 2869 56.00 +1 3233158..3233457 + 99 30064446 - S3351 - hypothetical protein 2870 51.57 0 3234009..3234995 + 328 30064447 yqjG S3353 - putative transferase 2871 51.22 0 3235288..3235656 + 122 30064448 yhaH S3354 - putative cytochrome 2872 55.74 +1 3235863..3236759 - 298 30064449 yhaJ S3356 - putative LYSR-type transcriptional regulator 2873 52.85 0 3236864..3237565 + 233 30064450 yhaK S3357 - hypothetical protein 2874 52.12 0 3237588..3237752 + 54 30064451 yhaL S3358 - hypothetical protein 2875 56.08 +1 3237964..3238530 - 188 30064452 yhaM S3359 - hypothetical protein 2876 56.54 +1 3238466..3239275 - 269 30064453 yhaN S3360 - hypothetical protein 2877 50.23 0 3239303..3240634 - 443 30064454 yhaO S3361 - putative transport system permease protein 2878 53.41 0 3240909..3242273 - 454 30064455 - S3363 - putative L-serine deaminase 2879 52.56 0 3242345..3242734 - 129 30064456 yhaR S3365 - hypothetical protein 2880 53.12 0 3242748..3245042 - 764 30064457 tdcE S3366 - formate acetyltransferase 3 2881 47.58 0 3245076..3246296 - 406 161486433 tdcD S3367 - propionate/acetate kinase 2882 49.62 0 3246310..3247641 - 443 30064459 tdcC S3368 - threonine/serine transporter TdcC 2883 46.06 -1 3247663..3248652 - 329 30064460 tdcB S3369 - threonine dehydratase 2884 42.17 -2 3248751..3249689 - 312 30064461 tdcA S3370 - DNA-binding transcriptional activator TdcA 2885 31.88 -2 3249879..3250223 + 114 30064462 tdcR S3371 - DNA-binding transcriptional activator TdcR 2886 47.27 -1 3252275..3252439 + 54 30064463 - S3374 - hypothetical protein 2887 53.40 0 3253237..3254382 - 381 161486432 yhaD S3376 - glycerate kinase I 2888 52.97 0 3254479..3255369 - 296 161486431 garR S3377 - tartronate semialdehyde reductase 2889 50.64 0 3256185..3257519 - 444 30064466 yhaU S3379 - putative transport protein 2890 52.93 0 3257894..3259465 + 523 30064467 yhaG S3380 - putative hydrolase 2891 52.24 0 3259517..3260341 - 274 30064468 agaR S3381 - DNA-binding transcriptional regulator AgaR 2892 55.04 0 3260590..3261870 + 426 30064469 agaZ S3382 - putative tagatose 6-phosphate kinase 2 2893 50.39 0 3261857..3262366 + 169 30064470 agaV S3383 - N-acetylgalactosamine-specific PTS system transporter subunit IIB 2894 55.77 +1 3262377..3263156 + 259 30064471 agaW S3384 - N-acetylgalactosameine-specific IIC component 2 2895 52.47 0 3263146..3263955 + 269 30064472 agaE S3385 - putative transport enzyme subunit 2896 53.10 0 3264042..3264476 + 144 30064473 agaF S3386 - putative transport enzyme subunit 2897 57.21 +1 3264473..3264916 + 147 30064474 agaA S3387 - N-acetylglucosamine-6-phosphate deacetylase 51.60 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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