IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2734	 56.78	+1	3085004..3085822	+	272	30064311	-	S3199	-	hypothetical protein
2735	 55.70	+1	3086164..3086637	+	157	30064312	-	S3200	-	hypothetical protein
2736	 58.33	+1	3086638..3087129	+	163	30064313	yeeS	S3201	-	RADC family DNA repair protein
2737	 52.70	0	3087216..3087437	+	73	30064314	yeeT	S3202	-	hypothetical protein
2738	 60.85	+2	3087517..3087894	+	125	30064315	yeeU	S3203	-	putative structural protein
2739	 54.76	0	3087941..3088318	+	125	30064316	yeeV	S3204	-	hypothetical protein
2740	 53.99	0	3088315..3088803	+	162	30064317	yeeW	S3205	-	hypothetical protein
2741	 47.92	0	3089105..3089947	+	280	30064318	-	S3207	-	hypothetical protein
2742	 50.33	0	3091372..3091671	+	99	30064319	-	S3209	-	IS3 orfA
2743	 55.02	0	3091668..3092534	+	288	30064320	-	S3210	-	IS3 orfB
2744	 42.92	-2	3093171..3093410	-	79	30064321	-	S3211	-	hypothetical protein
2745	 41.58	-2	3093545..3094150	-	201	30064322	-	S3212	-	hypothetical protein
2746	 52.98	0	3094265..3094768	-	167	30064323	-	S3213	-	IS1 orfB
2747	 52.90	0	3094687..3094962	-	91	30064324	-	S3214	-	IS1 orfA
2748	 52.55	0	3096365..3097951	-	528	30064325	yghK	S3215	-	putative permease
2749	 53.50	0	3098306..3100477	-	723	30064326	glcB	S3216	-	malate synthase G
2750	 54.81	0	3100499..3100903	-	134	30064327	glcG	S3217	-	hypothetical protein
2751	 54.99	0	3104940..3105710	+	256	30064328	glcC	S3220	-	DNA-binding transcriptional regulator GlcC
2752	 52.93	0	3107379..3109067	+	562	30064329	-	S3222	-	acyl-CoA synthetase
2753	 54.63	0	3109082..3109978	+	298	30064330	-	S3223	-	hypothetical protein
2754	 40.56	-2	3110011..3110259	+	82	30064331	-	S3224	-	hypothetical protein
2755	 50.71	0	3110259..3110609	+	116	30064332	-	S3225	-	putative class II aminotransferase
2756	 52.72	0	3110642..3111430	+	262	30064333	-	S3226	-	putative class II aminotransferase
2757	 51.30	0	3111466..3112545	-	359	30064334	-	S3227	-	hypothetical protein
2758	 51.26	0	3112542..3113612	-	356	30064335	-	S3228	-	hypothetical protein
2759	 48.66	0	3113643..3114203	-	186	30064336	-	S3229	-	hypothetical protein
2760	 45.70	-1	3114215..3115039	-	274	30064337	-	S3230	-	hypothetical protein
2761	 52.89	0	3115039..3116388	-	449	30064338	yghQ	S3231	-	hypothetical protein
2762	 53.23	0	3116434..3117192	-	252	30064339	yghR	S3232	-	hypothetical protein
2763	 49.58	0	3117224..3117937	-	237	30064340	yghS	S3233	-	hypothetical protein
2764	 47.33	-1	3118111..3118803	+	230	30064341	yghT	S3234	-	hypothetical protein
2765	 51.87	0	3118852..3120351	-	499	30064342	pitB	S3235	-	low-affinity phosphate transport protein
2766	 52.26	0	3120643..3122502	-	619	30064343	gsp	S3236	-	bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase
2767	 53.66	0	3122659..3123573	+	304	30064344	-	S3237	-	putative glutathione S-transferase YghU
2768	 53.41	0	3123696..3123944	-	82	30064345	hybG	S3238	-	hydrogenase 2 accessory protein HypG
2769	 55.56	0	3124078..3124419	-	113	30064346	hypA	S3239	-	hydrogenase nickel incorporation protein HybF
2770	 54.81	0	3124412..3124900	-	162	30064347	hybE	S3240	-	hydrogenase 2-specific chaperone
2771	 54.55	0	3124893..3125387	-	164	30064348	hybD	S3241	-	hydrogenase 2 maturation endopeptidase
2772	 53.35	0	3125387..3127090	-	567	30064349	hybC	S3242	-	hydrogenase 2 large subunit
2773	 54.37	0	3127087..3128265	-	392	30064350	hybB	S3243	-	putative hydrogenase 2 b cytochrome subunit
2774	 54.71	0	3128255..3129241	-	328	30064351	hybA	S3244	-	hydrogenase 2 protein HybA
2775	 54.24	0	3129244..3130362	-	372	30064352	-	S3245	-	hydrogenase 2 small subunit
2776	 45.14	-1	3130551..3130838	-	95	30064353	-	S3246	-	hypothetical protein
2777	 51.34	0	3130957..3131367	-	136	30064354	-	S3247	-	hypothetical protein
2778	 51.97	0	3132001..3133041	+	346	30064355	-	S3249	-	aldo-keto reductase
2779	 47.47	-1	3133081..3133575	-	164	30064356	yqhA	S3250	-	hypothetical protein
2780	 54.58	0	3133766..3134650	+	294	30064357	yghA	S3251	-	oxidoreductase
2781	 48.78	0	3134826..3135071	+	81	30064358	-	S3252	-	hypothetical protein
2782	 50.23	0	3134922..3135347	-	141	30064359	exbD	S3253	-	biopolymer transport protein ExbD
2783	 52.65	0	3135354..3136088	-	244	30064360	exbB	S3254	-	biopolymer transport protein ExbB
2784	 41.03	-2	3136081..3136236	-	51	30064361	-	S3255	-	hypothetical protein
2785	 51.68	0	3136340..3137527	+	395	30064362	metC	S3256	-	cystathionine beta-lyase
2786	 50.76	0	3137667..3138326	+	219	30064363	yghB	S3257	-	hypothetical protein
2787	 50.09	0	3138366..3139493	-	375	30064364	yqhC	S3259	-	putative ARAC-type regulatory protein
2788	 54.55	0	3139459..3140622	+	387	30064365	yqhD	S3258	-	putative oxidoreductase
2789	 51.09	0	3140727..3141554	+	275	161486438	dkgA	S3260	-	2,5-diketo-D-gluconate reductase A
2790	 46.49	-1	3141754..3142680	+	308	30064367	yqhG	S3261	-	hypothetical protein
2791	 47.67	0	3142731..3142988	+	85	30064368	yqhH	S3262	-	putative outer membrane lipoprotein
2792	 52.98	0	3143031..3144272	-	413	30064369	-	S3263	-	hypothetical protein
2793	 56.33	+1	3145361..3146773	-	470	30064370	sufI	S3265	-	repressor protein for FtsI
2794	 49.46	0	3146848..3147585	-	245	30064371	plsC	S3266	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
2795	 54.76	0	3147819..3150077	-	752	30064372	parC	S3267	-	DNA topoisomerase IV subunit A
2796	 53.21	0	3150623..3151105	-	160	30064373	-	S3268	-	hypothetical protein
2797	 50.38	0	3151158..3151550	-	130	30064374	ygiW	S3269	-	hypothetical protein
2798	 51.36	0	3151702..3152361	+	219	30064375	ygiX	S3270	-	DNA-binding transcriptional regulator QseB
2799	 52.55	0	3152358..3153632	+	424	30064376	ygiY	S3271	-	sensor protein QseC
2800	 34.23	-2	3153678..3154010	-	110	30064377	-	S3272	-	hypothetical protein
2801	 49.66	0	3154329..3154910	+	193	30064378	mdaB	S3273	-	modulator of drug activity B
2802	 51.43	0	3154941..3155255	+	104	30064379	ygiN	S3274	-	hypothetical protein
2803	 53.88	0	3155303..3157195	-	630	30064380	parE	S3275	-	DNA topoisomerase IV subunit B
2804	 53.61	0	3157224..3157805	-	193	30064381	yqiA	S3276	-	esterase YqiA
2805	 56.28	+1	3157805..3158632	-	275	30064382	icc	S3277	-	cyclic 3',5'-adenosine monophosphate phosphodiesterase
2806	 48.70	0	3158657..3159079	-	140	30064383	yqiB	S3278	-	hypothetical protein
2807	 50.63	0	3159080..3159709	-	209	30064384	nudF	S3279	-	ADP-ribose pyrophosphatase NudF
2808	 51.42	0	3159914..3161395	+	493	30064385	tolC	S3280	-	outer membrane channel protein
2809	 52.87	0	3161395..3161655	+	86	30064386	ygiA	S3281	-	hypothetical protein
2810	 56.10	+1	3161543..3162214	+	223	161486437	ygiB	S3282	-	hypothetical protein
2811	 50.47	0	3162220..3163380	+	386	30064388	ygiC	S3283	-	putative synthetase/amidase
2812	 53.68	0	3163418..3164233	-	271	30064389	ygiD	S3284	-	hypothetical protein
2813	 53.36	0	3164349..3165122	+	257	30064390	ygiE	S3285	-	zinc transporter ZupT
2814	 52.75	0	3165611..3166264	-	217	30064391	ribB	S3286	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
2815	 48.15	0	3166578..3166928	+	116	30064392	-	S3287	-	hypothetical protein
2816	 52.73	0	3167184..3167549	+	121	161486436	-	S3288	-	insertion sequence 2 OrfA protein
2817	 55.99	+1	3167507..3168358	+	283	161486435	-	S3289	-	insertion sequence 2 OrfB protein
2818	 52.90	0	3168409..3168684	+	91	30064395	-	S3290	-	IS1 orfA
2819	 52.98	0	3168603..3169106	+	167	30064396	-	S3291	-	IS1 orfB
2820	 49.28	0	3169116..3169391	+	91	30064397	-	S3292	-	IS4 orf
2821	 45.77	-1	3169778..3169978	-	66	30064398	glgS	S3294	-	glycogen synthesis protein GlgS
2822	 54.00	0	3170300..3170599	+	99	30064399	-	S3295	-	IS1 orfA
2823	 56.42	+1	3173108..3174541	-	477	30064400	-	S3298	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
2824	 55.30	0	3174589..3177429	-	946	30064401	glnE	S3299	-	bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase
2825	 54.69	0	3177452..3178753	-	433	30064402	ygiF	S3300	-	hypothetical protein
2826	 52.33	0	3178995..3179615	+	206	30064403	ygiM	S3301	-	putative signal transduction protein
2827	 56.17	+1	3179679..3180917	+	412	30064404	cca	S3302	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
2828	 52.55	0	3181079..3181900	-	273	30064405	uppP	S3303	-	undecaprenyl pyrophosphate phosphatase
2829	 50.68	0	3181991..3182359	-	122	30064406	folB	S3304	-	bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase
2830	 53.40	0	3182464..3183081	+	205	30064407	ygiH	S3305	-	putative glycerol-3-phosphate acyltransferase PlsY
2831	 49.10	0	3183024..3184025	-	333	30064408	ygiP	S3306	-	transcriptional activator TtdR
2832	 53.33	0	3184235..3185044	+	269	30064409	ttdA	S3307	-	tartrate dehydratase subunit alpha
2833	 53.30	0	3185072..3185677	+	201	30064410	ttdB	S3308	-	L(+)-tartrate dehydratase subunit beta
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.