IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
228	 54.74	0	254826..255152	+	108	30061801	-	S0249	-	IS629 orfA
229	 54.78	0	255387..256034	+	215	30061802	-	S0250	-	IS629 orfB
230	 47.49	-1	256085..256423	-	112	30061803	psiF	S0251	-	hypothetical protein
231	 52.19	0	256524..258008	-	494	30061804	phoA	S0252	-	alkaline phosphatase
232	 45.59	-1	258040..258300	-	86	30061805	yaiB	S0253	-	hypothetical protein
233	 51.32	0	258763..259857	+	364	30061806	ddl	S0254	-	D-alanyl-alanine synthetase A
234	 44.35	-1	259881..260225	-	114	30061807	-	S0255	-	hypothetical protein
235	 52.75	0	260353..260661	+	102	30061808	-	S0256	-	hypothetical protein
236	 53.24	0	260720..261814	-	364	30061809	yaiW	S0257	-	hypothetical protein
237	 51.02	0	261827..263047	-	406	30061810	sbmA	S0258	-	transport protein
238	 54.75	0	263399..264556	+	385	30061811	yaiH	S0259	-	beta-lactamase/D-alanine carboxypeptidase
239	 50.43	0	265695..266507	-	270	30061812	-	S0262	-	ISEhe3 orfB
240	 52.10	0	266781..267494	-	237	30061813	-	S0263	-	IS600 orfB
241	 46.53	-1	267635..267937	-	100	30061814	is600a	S0264	-	IS600 orfA
242	 55.19	0	268714..269619	-	301	161486542	yi22_6	S0266	-	insertion element IS2 transposase InsD
243	 53.01	0	269577..269942	-	121	161486541	yi21_6	S0267	-	insertion sequence 2 OrfA protein
244	 29.63	-2	270487..270756	+	89	30061817	-	S0269	-	hypothetical protein
245	 53.77	0	270893..271900	+	335	30061818	hemB	S0270	-	delta-aminolevulinic acid dehydratase
246	 54.58	0	272006..272857	-	283	30061819	tauD	S0271	-	taurine dioxygenase
247	 58.33	+1	272854..273681	-	275	30061820	tauC	S0272	-	taurine transporter subunit
248	 55.99	+1	273678..274445	-	255	30061821	tauB	S0273	-	taurine transporter ATP-binding subunit
249	 56.52	+1	274458..275354	-	298	30061822	tauA	S0274	-	taurine transporter substrate binding subunit
250	 52.98	0	275912..276415	-	167	30061823	-	S0275	-	IS1 orfB
251	 52.90	0	276334..276609	-	91	30061824	-	S0276	-	IS1 orfA
252	 37.22	-2	276754..277422	+	222	30061825	ykgH	S0277	-	hypothetical protein
253	 42.25	-2	277498..277710	+	70	30061826	-	S0278	-	hypothetical protein
254	 52.30	0	277665..278360	-	231	161486540	ykgG	S0279	-	putative transporter
255	 50.42	0	278353..279780	-	475	30061828	ykgF	S0280	-	hypothetical protein
256	 50.14	0	279791..280510	-	239	30061829	ykgE	S0281	-	putative dehydrogenase subunit
257	 52.90	0	280929..281204	+	91	30061830	-	S0282	-	IS1 orfA
258	 52.98	0	281123..281626	+	167	30061831	-	S0283	-	IS1 orfB
259	 54.11	0	282704..284917	+	737	30061832	rhsG	S0284	-	putative Rhs-family protein
260	 47.26	-1	284940..285140	+	66	30061833	-	S0285	-	cytoplasmic protein
261	 48.68	0	285197..285385	+	62	30061834	-	S0286	-	putative cytoplasmic protein
262	 54.17	0	285407..285814	+	135	30061835	-	S0287	-	putative Rhs-family protein
263	 59.50	+1	285811..288099	+	762	30061836	rhsD	S0288	-	putative Rhs-family protein
264	 56.36	+1	288096..289085	+	329	30061837	rhs-like	S0289	-	putative Rhs-family protein
265	 55.12	0	290134..290904	-	256	30061838	yafV	S0290	-	hypothetical protein
266	 50.42	0	291058..291531	+	157	30061839	ykfE	S0291	-	vertebrate C-lysozyme inhibitor
267	 55.99	+1	291574..294018	-	814	161486539	fadE	S0292	-	acyl-CoA dehydrogenase
268	 50.78	0	294258..294836	+	192	30061841	gmhA	S0293	-	phosphoheptose isomerase
269	 53.65	0	295042..295809	+	255	30061842	yafJ	S0294	-	putative amidotransferase
270	 49.26	0	295780..296520	-	246	30061843	yafK	S0295	-	hypothetical protein
271	 54.95	0	296871..297425	+	184	30061844	yafL	S0296	-	putative lipoprotein
272	 45.18	-1	297601..298098	+	165	30061845	yafM	S0297	-	hypothetical protein
273	 58.39	+1	298315..300054	-	579	30061846	fhiA	S0299	-	flagellar biosynthetic protein FlhA
274	 52.29	0	299999..300784	+	261	30061847	mbhA	S0298	-	hypothetical protein
275	 53.88	0	300855..301910	+	351	30061848	dinP	S0300	-	DNA polymerase IV
276	 41.16	-2	301962..302255	+	97	30061849	yafN	S0301	-	putative antitoxin of the YafO-YafN toxin-antitoxin system
277	 43.36	-2	302258..302656	+	132	30061850	yafO	S0302	-	putative toxin YafO
278	 42.83	-2	302666..303118	+	150	30061851	yafP	S0303	-	hypothetical protein
279	 52.87	0	303364..304407	+	347	30061852	-	S0304	-	hypothetical protein
280	 56.36	+1	304523..304978	+	151	30061853	prfH	S0305	-	peptide chain release factor 2
281	 51.44	0	305140..306597	-	485	30061854	pepD	S0306	-	aminoacyl-histidine dipeptidase (peptidase D)
282	 52.07	0	306859..307317	+	152	30061855	gpt	S0307	-	xanthine-guanine phosphoribosyltransferase
283	 53.25	0	307409..308653	+	414	30061856	frsA	S0308	-	fermentation/respiration switch protein
284	 50.00	0	308711..309112	+	133	30061857	crl	S0309	-	DNA-binding transcriptional regulator Crl
285	 45.17	-1	309151..310206	-	351	30061858	phoE	S0310	-	outer membrane phosphoporin protein E
286	 52.54	0	310382..310657	+	91	30061859	-	S0311	-	IS1 orfA
287	 52.78	0	310576..311079	+	167	30061860	-	S0312	-	IS1 orfB
288	 55.80	+1	311270..312373	+	367	30061861	proB	S0313	-	gamma-glutamyl kinase
289	 54.31	0	312385..313638	+	417	30061862	proA	S0314	-	gamma-glutamyl phosphate reductase
290	 46.48	-1	313843..315006	-	387	30061863	-	S0316	-	putative phage integrase
291	 46.20	-1	315192..315494	+	100	30061864	-	S0317	-	IS600 orfA
292	 52.24	0	315635..316348	+	237	30061865	-	S0318	-	IS600 orfB
293	 50.69	0	316401..317051	+	216	30061866	-	S0319	-	hypothetical protein
294	 40.69	-2	316960..317421	+	153	30061867	-	S4801	-	putative phage tail fibre protein
295	 31.62	-2	318229..319278	-	349	30061868	-	S4802	-	hypothetical protein
296	 45.17	-1	319729..320919	+	396	30061869	-	S4808	-	hypothetical protein
297	 31.83	-2	321309..322769	-	486	30061870	gtrII	S4803	-	putative glucosyl tranferase II
298	 42.26	-2	322766..323695	-	309	30061871	gtrBI	S0320	-	putative bactoprenol glucosyl transferase
299	 42.70	-2	323692..324054	-	120	30061872	gtrAI	S0321	-	putative flippase
300	 50.68	0	324316..324609	-	97	30061873	-	S0322	-	integrase fragment
301	 52.24	0	324718..325431	-	237	30061874	-	S0323	-	IS600 orfB
302	 46.53	-1	325572..325874	-	100	30061875	-	S0324	-	IS600 orfA
303	 46.82	-1	326060..327223	+	387	30061876	-	S0325	-	putative phage integrase
304	 33.93	-2	327572..328744	+	390	30061877	-	S4804	-	hypothetical protein
305	 49.43	0	329548..329988	-	146	30061878	-	S0326	-	IS600 orfB
306	 54.43	0	330729..331349	-	206	30061879	-	S0327	-	IS629 orfB
307	 55.25	0	331711..331929	-	72	30061880	-	S0328	-	IS629, orfA
308	 53.67	0	332080..333195	+	371	30061881	yaiC	S0329	-	diguanylate cyclase AdrA
309	 54.81	0	333212..334021	-	269	30061882	proC	S0330	-	pyrroline-5-carboxylate reductase
310	 56.21	+1	334141..334599	+	152	161486538	yaiI	S0331	-	hypothetical protein
311	 52.00	0	334782..335306	+	174	30061884	aroL	S0332	-	shikimate kinase II
312	 48.44	0	335356..335547	+	63	30061885	yaiA	S0333	-	hypothetical protein
313	 46.17	-1	335805..336482	+	225	30061886	aroM	S0334	-	hypothetical protein
314	 51.23	0	336554..336838	+	94	30061887	yaiE	S0335	-	hypothetical protein
315	 48.94	0	337047..337328	+	93	30061888	-	S0336	-	hypothetical protein
316	 43.64	-1	337325..337780	+	151	30061889	-	S0337	-	hypothetical protein
317	 51.54	0	337858..338769	-	303	30061890	rdgC	S0339	-	recombination associated protein
318	 55.70	+1	338894..339787	+	297	161486537	yajF	S0338	-	fructokinase
319	 50.51	0	339945..341126	-	393	30061892	araJ	S0341	-	protein AraJ
320	 54.04	0	341252..344395	-	1047	30061893	sbcC	S0342	-	exonuclease subunit SbcC
321	 53.20	0	344392..345594	-	400	30061894	sbcD	S0343	-	exonuclease subunit SbcD
322	 53.91	0	345784..346473	+	229	30061895	phoB	S0344	-	transcriptional regulator PhoB
323	 53.24	0	346531..347826	+	431	30061896	phoR	S0345	-	phosphate regulon sensor protein
324	 55.53	0	348233..349552	+	439	30061897	brnQ	S0346	-	branched-chain amino-acid transport system II carrier protein
325	 52.55	0	349628..351001	+	457	30061898	proY	S0347	-	putative proline-specific permease
326	 54.35	0	351157..352974	+	605	30061899	malZ	S0348	-	maltodextrin glucosidase
327	 53.97	0	353645..354715	+	356	30061900	queA	S0350	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.