IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2673	 55.59	0	3012114..3013034	-	306	30064250	speB	S3129	-	agmatinase
2674	 50.13	0	3013170..3013544	-	124	30064251	-	S3130	-	lipoprotein
2675	 52.58	0	3013570..3014073	-	167	30064252	-	S3131	-	IS1 orfB
2676	 52.54	0	3013992..3014267	-	91	30064253	-	S3132	-	IS1 orfA
2677	 53.82	0	3014414..3016390	-	658	30064254	speA	S3133	-	arginine decarboxylase
2678	 40.82	-2	3016399..3016545	-	48	30064255	yqgB	S3134	-	hypothetical protein
2679	 48.61	0	3016666..3016881	+	71	30064256	yqgC	S3135	-	hypothetical protein
2680	 43.25	-2	3016878..3017129	-	83	30064257	yqgD	S3136	-	hypothetical protein
2681	 53.25	0	3017185..3018339	+	384	30064258	metK	S3137	-	S-adenosylmethionine synthetase
2682	 53.32	0	3018815..3020170	+	451	30064259	galP	S3138	-	major facilitator superfamily galactose-proton symporter
2683	 55.22	0	3020247..3020744	+	165	30064260	sprT	S3139	-	hypothetical protein
2684	 54.52	0	3020839..3021546	+	235	30064261	endA	S3140	-	DNA-specific endonuclease I
2685	 53.01	0	3021626..3022357	+	243	30064262	yggJ	S3141	-	hypothetical protein
2686	 53.52	0	3022370..3023320	+	316	30064263	gshB	S3142	-	glutathione synthetase
2687	 51.42	0	3023429..3023992	+	187	161486443	yqgE	S3143	-	hypothetical protein
2688	 53.24	0	3023992..3024408	+	138	30064265	yqgF	S3144	-	Holliday junction resolvase-like protein
2689	 54.09	0	3024584..3025609	-	341	30064266	yggR	S3146	-	putative transport protein
2690	 51.21	0	3025582..3026286	+	234	30064267	yggS	S3145	-	hypothetical protein
2691	 51.32	0	3026304..3026870	+	188	30064268	yggT	S3147	-	putative resistance protein
2692	 48.11	0	3026867..3027157	+	96	161486442	yggU	S3148	-	hypothetical protein
2693	 55.72	+1	3027165..3027758	+	197	30064270	yggV	S3149	-	putative deoxyribonucleotide triphosphate pyrophosphatase
2694	 52.33	0	3027751..3028887	+	378	30064271	yggW	S3150	-	coproporphyrinogen III oxidase
2695	 42.66	-2	3029201..3029554	+	117	30064272	-	S3151	-	hypothetical protein
2696	 42.09	-2	3029571..3030164	+	197	30064273	-	S3152	-	hypothetical protein
2697	 43.25	-2	3030209..3030712	+	167	30064274	-	S3153	-	hypothetical protein
2698	 52.90	0	3031144..3031419	-	91	30064275	-	S3154	-	IS1 orfA
2699	 46.01	-1	3031476..3032777	+	433	30064276	-	S3155	-	hypothetical protein
2700	 44.76	-1	3032878..3033840	-	320	30064277	yggM	S3156	-	putative alpha helix chain
2701	 52.53	0	3033957..3035003	-	348	30064278	ansB	S3157	-	L-asparaginase II
2702	 52.72	0	3035179..3035895	-	238	30064279	yggN	S3158	-	hypothetical protein
2703	 48.32	0	3036082..3036408	-	108	161486441	yggL	S3159	-	hypothetical protein
2704	 52.64	0	3036408..3037127	-	239	30064281	trmB	S3160	-	tRNA (guanine-N(7))-methyltransferase
2705	 55.56	0	3037288..3038340	+	350	30064282	mutY	S3161	-	adenine DNA glycosylase
2706	 47.46	-1	3038368..3038643	+	91	30064283	yggX	S3162	-	hypothetical protein
2707	 50.88	0	3038705..3039787	+	360	30064284	mltC	S3163	-	murein transglycosylase C
2708	 49.58	0	3039941..3041245	+	434	30064285	nupG	S3164	-	permease protein for nucleosides
2709	 52.00	0	3041294..3043489	-	731	30064286	speC	S3165	-	ornithine decarboxylase
2710	 51.55	0	3043827..3044534	+	235	30064287	yqgA	S3166	-	putative transport protein
2711	 48.77	0	3044913..3046175	+	420	30064288	-	S4822	-	putative P4-type integrase
2712	 47.16	-1	3046628..3050143	+	1171	30064289	-	S3169	-	superfamily I DNA helicase
2713	 56.56	+1	3051492..3052253	+	253	30064290	-	S4823	-	hypothetical protein
2714	 41.76	-2	3052614..3056471	+	1285	30064291	sigA	S4824	-	serine protease
2715	 52.51	0	3059545..3059763	+	72	30064292	-	S3177	-	hypothetical protein
2716	 51.20	0	3059914..3063126	-	1070	30064293	pic	S3178	-	serine protease precurser
2717	 51.44	0	3064760..3065593	-	277	30064294	-	S3180	-	reverse transcriptase-like protein
2718	 55.95	+1	3065587..3066267	-	226	30064295	-	S3181	-	reverse transcriptase-like protein
2719	 53.21	0	3067353..3067679	-	108	30064296	-	S3184	-	IS629 orfA
2720	 51.64	0	3067962..3068387	-	141	30064297	-	S3185	-	hypothetical protein
2721	 55.21	0	3068384..3068767	-	127	30064298	-	S3186	-	hypothetical protein
2722	 48.50	0	3069140..3069739	-	199	30064299	-	S3187	-	hypothetical protein
2723	 53.01	0	3070456..3070821	+	121	161486440	-	S3188	-	insertion sequence 2 OrfA protein
2724	 55.08	0	3070779..3071684	+	301	161486439	-	S3189	-	insertion element IS2 transposase InsD
2725	 53.62	0	3073538..3073744	+	68	30064302	-	S3190	-	hypothetical protein
2726	 51.83	0	3073830..3074402	+	190	30064303	-	S3191	-	hypothetical protein
2727	 47.02	-1	3074404..3074688	-	94	30064304	-	S4825	-	hypothetical protein
2728	 37.45	-2	3075971..3076990	+	339	30064305	-	S4826	-	hypothetical protein
2729	 57.96	+1	3077100..3077972	+	290	30064306	sap	S3193	-	hypothetical protein
2730	 56.26	+1	3078306..3079199	+	297	30064307	-	S3194	-	outer membrane fluffing protein
2731	 58.51	+1	3079305..3081425	+	706	30064308	-	S3195	-	outer membrane fluffing protein
2732	 52.24	0	3081546..3084062	+	838	30064309	-	S3196	-	hypothetical protein
2733	 48.03	0	3084138..3084593	+	151	30064310	-	S3197	-	hypothetical protein
2734	 56.78	+1	3085004..3085822	+	272	30064311	-	S3199	-	hypothetical protein
2735	 55.70	+1	3086164..3086637	+	157	30064312	-	S3200	-	hypothetical protein
2736	 58.33	+1	3086638..3087129	+	163	30064313	yeeS	S3201	-	RADC family DNA repair protein
2737	 52.70	0	3087216..3087437	+	73	30064314	yeeT	S3202	-	hypothetical protein
2738	 60.85	+2	3087517..3087894	+	125	30064315	yeeU	S3203	-	putative structural protein
2739	 54.76	0	3087941..3088318	+	125	30064316	yeeV	S3204	-	hypothetical protein
2740	 53.99	0	3088315..3088803	+	162	30064317	yeeW	S3205	-	hypothetical protein
2741	 47.92	0	3089105..3089947	+	280	30064318	-	S3207	-	hypothetical protein
2742	 50.33	0	3091372..3091671	+	99	30064319	-	S3209	-	IS3 orfA
2743	 55.02	0	3091668..3092534	+	288	30064320	-	S3210	-	IS3 orfB
2744	 42.92	-2	3093171..3093410	-	79	30064321	-	S3211	-	hypothetical protein
2745	 41.58	-2	3093545..3094150	-	201	30064322	-	S3212	-	hypothetical protein
2746	 52.98	0	3094265..3094768	-	167	30064323	-	S3213	-	IS1 orfB
2747	 52.90	0	3094687..3094962	-	91	30064324	-	S3214	-	IS1 orfA
2748	 52.55	0	3096365..3097951	-	528	30064325	yghK	S3215	-	putative permease
2749	 53.50	0	3098306..3100477	-	723	30064326	glcB	S3216	-	malate synthase G
2750	 54.81	0	3100499..3100903	-	134	30064327	glcG	S3217	-	hypothetical protein
2751	 54.99	0	3104940..3105710	+	256	30064328	glcC	S3220	-	DNA-binding transcriptional regulator GlcC
2752	 52.93	0	3107379..3109067	+	562	30064329	-	S3222	-	acyl-CoA synthetase
2753	 54.63	0	3109082..3109978	+	298	30064330	-	S3223	-	hypothetical protein
2754	 40.56	-2	3110011..3110259	+	82	30064331	-	S3224	-	hypothetical protein
2755	 50.71	0	3110259..3110609	+	116	30064332	-	S3225	-	putative class II aminotransferase
2756	 52.72	0	3110642..3111430	+	262	30064333	-	S3226	-	putative class II aminotransferase
2757	 51.30	0	3111466..3112545	-	359	30064334	-	S3227	-	hypothetical protein
2758	 51.26	0	3112542..3113612	-	356	30064335	-	S3228	-	hypothetical protein
2759	 48.66	0	3113643..3114203	-	186	30064336	-	S3229	-	hypothetical protein
2760	 45.70	-1	3114215..3115039	-	274	30064337	-	S3230	-	hypothetical protein
2761	 52.89	0	3115039..3116388	-	449	30064338	yghQ	S3231	-	hypothetical protein
2762	 53.23	0	3116434..3117192	-	252	30064339	yghR	S3232	-	hypothetical protein
2763	 49.58	0	3117224..3117937	-	237	30064340	yghS	S3233	-	hypothetical protein
2764	 47.33	-1	3118111..3118803	+	230	30064341	yghT	S3234	-	hypothetical protein
2765	 51.87	0	3118852..3120351	-	499	30064342	pitB	S3235	-	low-affinity phosphate transport protein
2766	 52.26	0	3120643..3122502	-	619	30064343	gsp	S3236	-	bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase
2767	 53.66	0	3122659..3123573	+	304	30064344	-	S3237	-	putative glutathione S-transferase YghU
2768	 53.41	0	3123696..3123944	-	82	30064345	hybG	S3238	-	hydrogenase 2 accessory protein HypG
2769	 55.56	0	3124078..3124419	-	113	30064346	hypA	S3239	-	hydrogenase nickel incorporation protein HybF
2770	 54.81	0	3124412..3124900	-	162	30064347	hybE	S3240	-	hydrogenase 2-specific chaperone
2771	 54.55	0	3124893..3125387	-	164	30064348	hybD	S3241	-	hydrogenase 2 maturation endopeptidase
2772	 53.35	0	3125387..3127090	-	567	30064349	hybC	S3242	-	hydrogenase 2 large subunit
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.