IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2306	 60.78	+2	2598850..2599665	+	271	30063882	-	S2703	-	dihydropteroate synthase
2307	 58.09	+1	2599752..2600054	+	100	30063883	-	S2704	-	phosphoglucosamine mutase
2308	 60.78	+2	2600230..2601723	-	497	30063884	-	S2705	-	putative transposase
2309	 60.89	+2	2601934..2602158	-	74	30063885	-	S2706	-	hypothetical protein
2310	 67.48	+2	2602155..2602892	-	245	30063886	parA	S2707	-	resolvase
2311	 62.16	+2	2603040..2603372	+	110	30063887	-	S2708	-	putative transcriptional regulator
2312	 62.11	+2	2603369..2604136	+	255	30063888	-	S2709	-	putative arsenical resistance protein
2313	 60.55	+2	2604133..2604639	+	168	30063889	-	S2710	-	arsenate reductase
2314	 62.83	+2	2604636..2605703	+	355	30063890	-	S2711	-	putative sodium bile acid symporter family protein
2315	 60.12	+2	2606599..2607087	-	162	30063891	-	S2715	-	hypothetical protein
2316	 53.04	0	2607237..2608043	-	268	30063892	trbL	S2716	-	putative mating pair formation protein
2317	 59.87	+2	2608282..2609061	-	259	30063893	trbJ	S2718	-	putative mating pair formation protein
2318	 52.38	0	2609202..2609390	-	62	30063894	-	S2719	-	putative stabilization protein
2319	 59.07	+1	2610423..2611304	-	293	30063895	repC	S2720	-	putative replication protein C
2320	 55.68	+1	2611291..2612118	-	275	30063896	-	S2721	-	putative DNA helicase
2321	 50.00	0	2612123..2612344	-	73	30063897	-	S2722	-	hypothetical protein
2322	 58.02	+1	2612492..2613694	-	400	30063898	-	S2723	-	putative integrase
2323	 53.99	0	2613999..2615576	-	525	30063899	guaA	S2725	-	bifunctional GMP synthase/glutamine amidotransferase protein
2324	 54.33	0	2615645..2617111	-	488	30063900	guaB	S2726	-	inositol-5-monophosphate dehydrogenase
2325	 53.25	0	2617273..2618643	+	456	30063901	xseA	S2727	-	exodeoxyribonuclease VII large subunit
2326	 47.22	-1	2618640..2618891	-	83	30063902	-	S2728	-	hypothetical protein
2327	 52.21	0	2618925..2620397	-	490	30063903	engA	S2729	-	GTP-binding protein EngA
2328	 53.35	0	2620515..2621693	-	392	30063904	-	S2730	-	outer membrane protein assembly complex subunit YfgL
2329	 49.92	0	2621704..2622324	-	206	30063905	-	S2731	-	hypothetical protein
2330	 54.35	0	2622342..2623616	-	424	30063906	hisS	S2732	-	histidyl-tRNA synthetase
2331	 53.19	0	2623719..2624846	-	375	30063907	ispG	S2733	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2332	 54.34	0	2624873..2625886	-	337	30063908	yfgA	S2734	-	hypothetical protein
2333	 52.73	0	2626171..2627325	-	384	30063909	yfgB	S2735	-	hypothetical protein
2334	 52.55	0	2627475..2627906	-	143	30063910	ndk	S2736	-	nucleoside diphosphate kinase
2335	 57.81	+1	2630171..2631367	-	398	30063911	-	S2738	-	ISSfl4 orf
2336	 47.23	-1	2632898..2633674	-	258	30063912	sseB	S2741	-	enhanced serine sensitivity protein SseB
2337	 56.07	+1	2633816..2635099	-	427	30063913	pepB	S2742	-	aminopeptidase B
2338	 50.75	0	2635158..2635358	-	66	30063914	yfhJ	S2743	-	hypothetical protein
2339	 52.68	0	2635370..2635705	-	111	30063915	fdx	S2744	-	[2FE-2S] ferredoxin, electron carrer protein
2340	 57.59	+1	2635707..2637557	-	616	30063916	hscA	S2745	-	chaperone protein HscA
2341	 51.94	0	2637574..2638089	-	171	30063917	hscB	S2746	-	co-chaperone HscB
2342	 50.62	0	2638185..2638508	-	107	30063918	iscA	S2747	-	iron-sulfur cluster assembly protein
2343	 49.35	0	2638525..2638911	-	128	30063919	-	S2748	-	scaffold protein
2344	 53.25	0	2638939..2640153	-	404	30063920	yfhO	S2749	-	cysteine desulfurase
2345	 53.78	0	2640265..2640753	-	162	30063921	-	S2750	-	DNA-binding transcriptional regulator IscR
2346	 54.79	0	2641023..2641763	-	246	30063922	-	S2751	-	putative ATP synthase beta subunit
2347	 53.86	0	2641882..2642685	+	267	30063923	suhB	S2752	-	inositol monophosphatase
2348	 50.41	0	2642830..2643684	+	284	30063924	-	S2753	-	putative enzyme
2349	 51.44	0	2643875..2645155	+	426	30063925	csiE	S2754	-	stationary phase inducible protein CsiE
2350	 56.40	+1	2645147..2646286	-	379	30063926	hcaT	S2755	-	putative 3-phenylpropionic acid transporter
2351	 49.94	0	2646446..2647336	-	296	30063927	hcaR	S2756	-	DNA-binding transcriptional regulator HcaR
2352	 53.08	0	2647472..2648833	+	453	30063928	hcaA1	S2757	-	large terminal subunit of phenylpropionate dioxygenase
2353	 52.79	0	2648830..2649348	+	172	30063929	hcaA2	S2758	-	3-phenylpropionate dioxygenase subunit beta
2354	 55.45	0	2649348..2649668	+	106	30063930	hcaC	S2759	-	3-phenylpropionate dioxygenase ferredoxin subunit
2355	 56.09	+1	2649665..2650477	+	270	30063931	hcaB	S2760	-	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase
2356	 48.89	0	2651734..2652228	+	164	30063932	yphA	S2762	-	hypothetical protein
2357	 55.10	0	2652276..2653148	-	290	30063933	yphB	S2763	-	hypothetical protein
2358	 54.16	0	2653160..2654254	-	364	30063934	yphC	S2764	-	putative oxidoreductase
2359	 55.26	0	2654287..2655285	-	332	30063935	yphD	S2765	-	putative transport system permease protein
2360	 55.16	0	2655310..2656821	-	503	30063936	yphE	S2766	-	putative ATP-binding component of a transport system
2361	 51.26	0	2661322..2662515	+	397	30063937	yphH	S2769	-	putative NAGC-like transcriptional regulator
2362	 53.11	0	2662713..2663966	-	417	30063938	glyA	S2770	-	serine hydroxymethyltransferase
2363	 52.39	0	2664293..2665483	+	396	30063939	hmpA	S2771	-	nitric oxide dioxygenase
2364	 51.03	0	2665528..2665866	-	112	30063940	glnB	S2772	-	nitrogen regulatory protein P-II 1
2365	 54.31	0	2665927..2667261	-	444	30063941	yfhA	S2773	-	putative 2-component transcriptional regulator
2366	 54.34	0	2667251..2667964	-	237	30063942	yfhG	S2774	-	hypothetical protein
2367	 52.38	0	2668129..2669619	-	496	30063943	yfhK	S2775	-	putative 2-component sensor protein
2368	 56.64	+1	2670114..2674001	-	1295	30063944	purL	S2776	-	phosphoribosylformylglycinamidine synthase
2369	 50.39	0	2674398..2675816	+	472	30063945	yfhD	S2777	-	putative transglycosylase
2370	 54.00	0	2675813..2676349	-	178	30063946	yfhC	S2778	-	tRNA-specific adenosine deaminase
2371	 52.52	0	2676374..2677009	-	211	161486454	yfhB	S2779	-	hypothetical protein
2372	 51.83	0	2677218..2678066	+	282	161486453	yfhH	S2780	-	putative DNA-binding transcriptional regulator
2373	 49.89	0	2678519..2678959	-	146	30063949	-	S2781	-	DNA-invertase
2374	 46.36	-1	2679457..2681283	+	608	30063950	ipaH_7	S2782	-	invasion plasmid antigen
2375	 56.96	+1	2681284..2681829	-	181	30063951	-	S2783	-	hypothetical protein
2376	 53.33	0	2681874..2683163	-	429	30063952	-	S2784	-	putative tail fiber protein
2377	 49.69	0	2683187..2683675	-	162	30063953	-	S2785	-	putative tail fiber assembly protein
2378	 45.95	-1	2683735..2683845	-	36	30063954	-	S2786	-	putative tail fiber protein
2379	 53.01	0	2684317..2684682	+	121	161486452	-	S2787	-	insertion sequence 2 OrfA protein
2380	 55.19	0	2684640..2685545	+	301	161486451	-	S2788	-	insertion element IS2 transposase InsD
2381	 51.17	0	2685470..2686456	-	328	30063957	-	S2789	-	putative tail fiber protein
2382	 49.83	0	2686443..2687048	-	201	30063958	-	S2790	-	hypothetical protein
2383	 52.14	0	2687050..2687517	-	155	30063959	-	S2791	-	putative bacteriophage protein
2384	 45.87	-1	2687812..2688114	+	100	30063960	-	S2793	-	IS600 orfA
2385	 52.24	0	2688255..2688968	+	237	30063961	-	S2794	-	IS600 orfB
2386	 51.75	0	2689009..2689665	-	218	30063962	-	S2795	-	hypothetical protein
2387	 51.49	0	2689707..2690108	-	133	30063963	-	S2796	-	hypothetical protein
2388	 43.68	-1	2690323..2690583	+	86	30063964	yfhL	S2797	-	hypothetical protein
2389	 50.39	0	2691277..2691657	-	126	30063965	acpS	S2798	-	4'-phosphopantetheinyl transferase
2390	 55.33	0	2691657..2692388	-	243	30063966	pdxJ	S2799	-	pyridoxal phosphate biosynthetic protein PdxJ
2391	 53.36	0	2692400..2693128	-	242	30063967	recO	S2800	-	DNA repair protein RecO
2392	 52.54	0	2693140..2694045	-	301	30063968	era	S2801	-	GTP-binding protein Era
2393	 50.81	0	2694042..2694722	-	226	30063969	rnc	S2802	-	ribonuclease III
2394	 52.00	0	2694994..2695968	-	324	30063970	lepB	S2803	-	lsignal peptidase I
2395	 53.67	0	2695984..2697783	-	599	30063971	lepA	S2804	-	GTP-binding protein LepA
2396	 55.83	+1	2697981..2698460	-	159	30063972	rseC	S2805	-	SoxR reducing system protein RseC
2397	 50.78	0	2698457..2699413	-	318	30063973	rseB	S2806	-	periplasmic negative regulator of sigmaE
2398	 51.92	0	2699413..2700063	-	216	30063974	rseA	S2807	-	anti-RNA polymerase sigma factor SigE
2399	 48.96	0	2700096..2700671	-	191	30063975	rpoE	S2808	-	RNA polymerase sigma factor RpoE
2400	 52.56	0	2702686..2703543	-	285	30063976	yfiC	S2810	-	putative enzyme
2401	 54.91	0	2703555..2704889	+	444	30063977	srmB	S2811	-	ATP-dependent RNA helicase SrmB
2402	 48.11	0	2704924..2705850	-	308	30063978	yfiE	S2812	-	putative LYSR-type transcriptional regulator
2403	 51.19	0	2705908..2706495	+	195	30063979	yfiK	S2813	-	neutral amino-acid efflux protein
2404	 47.66	0	2706551..2706934	-	127	30063980	yfiD	S2814	-	autonomous glycyl radical cofactor GrcA
2405	 52.03	0	2707239..2707928	+	229	30063981	ung	S2815	-	uracil-DNA glycosylase
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.