IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2269	 54.49	0	2545764..2547767	+	667	30063845	tktB	S2658	-	transketolase
2270	 54.12	0	2547870..2548913	-	347	30063846	-	S2659	-	hypothetical protein
2271	 48.09	0	2549039..2549614	-	191	30063847	yffH	S2660	-	hypothetical protein
2272	 55.51	0	2549682..2551661	-	659	30063848	yffG	S2661	-	putative oxidoreductase Fe-S binding subunit
2273	 54.24	0	2553786..2556899	+	1037	30063849	acrD	S2663	-	aminoglycoside/multidrug efflux system
2274	 47.06	-1	2557438..2557794	+	118	30063850	yffB	S2664	-	hypothetical protein
2275	 53.10	0	2557798..2558925	+	375	30063851	dapE	S2665	-	succinyl-diaminopimelate desuccinylase
2276	 53.65	0	2559263..2559961	-	232	30063852	ypfH	S2666	-	esterase YpfH
2277	 55.16	0	2560035..2562050	-	671	30063853	ypfI	S2667	-	hypothetical protein
2278	 53.59	0	2562065..2562928	-	287	30063854	-	S2668	-	hypothetical protein
2279	 52.10	0	2563096..2563809	-	237	30063855	purC	S2669	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2280	 55.36	0	2564022..2565056	-	344	30063856	nlpB	S2670	-	lipoprotein
2281	 51.65	0	2565073..2565951	-	292	30063857	dapA	S2671	-	dihydrodipicolinate synthase
2282	 49.26	0	2566669..2567139	+	156	30063858	bcp	S2673	-	thioredoxin-dependent thiol peroxidase
2283	 56.80	+1	2567392..2568009	+	205	30063859	hyfA	S2674	-	hydrogenase 4 Fe-S subunit
2284	 53.38	0	2570037..2570984	+	315	30063860	hyfC	S2676	-	hydrogenase 4 membrane subunit
2285	 55.56	0	2571001..2572440	+	479	30063861	hyfD	S2677	-	hydrogenase 4 subunit D
2286	 53.30	0	2572452..2573102	+	216	30063862	hyfE	S2678	-	hydrogenase 4 membrane subunit
2287	 54.19	0	2573107..2574693	+	528	30063863	hyfF	S2679	-	hydrogenase 4 subunit F
2288	 55.31	0	2576407..2576952	+	181	30063864	hyfH	S2681	-	hydrogenase 4 subunit H
2289	 56.39	+1	2576949..2577707	+	252	30063865	hyfI	S2682	-	hydrogenase 4 Fe-S subunit
2290	 51.99	0	2577637..2578113	+	158	30063866	-	S2683	-	putative protein processing element
2291	 54.05	0	2581143..2582204	-	353	30063867	perM	S2686	-	putative permease
2292	 54.17	0	2582417..2583880	+	487	30063868	-	S2687	-	hypothetical protein
2293	 52.22	0	2583901..2584260	+	119	30063869	-	S2688	-	putative oxidoreductase
2294	 53.15	0	2584393..2585139	-	248	30063870	-	S2689	-	DNA replication initiation factor
2295	 51.86	0	2585189..2586478	-	429	30063871	uraA	S2690	-	uracil transporter
2296	 53.11	0	2586564..2587190	-	208	30063872	upp	S2691	-	uracil phosphoribosyltransferase
2297	 53.66	0	2587499..2588551	+	350	30063873	purM	S2692	-	phosphoribosylaminoimidazole synthetase
2298	 53.52	0	2588551..2589189	+	212	30063874	purN	S2693	-	phosphoribosylglycinamide formyltransferase
2299	 48.67	0	2589361..2591427	+	688	30063875	ppk	S2694	-	polyphosphate kinase
2300	 51.04	0	2591432..2592973	+	513	30063876	ppx	S2695	-	exopolyphosphatase
2301	 46.20	-1	2594187..2594489	+	100	30063877	-	S2697	-	IS600 orfA
2302	 52.24	0	2594630..2595343	+	237	30063878	-	S2698	-	IS600 orfB
2303	 48.96	0	2596873..2597064	+	63	30063879	-	S2700	-	hypothetical protein
2304	 47.21	-1	2597375..2597893	+	172	30063880	-	S2701	-	putative outer membrane lipoprotein
2305	 49.26	0	2597909..2598448	+	179	30063881	-	S2702	-	hypothetical protein
2306	 60.78	+2	2598850..2599665	+	271	30063882	-	S2703	-	dihydropteroate synthase
2307	 58.09	+1	2599752..2600054	+	100	30063883	-	S2704	-	phosphoglucosamine mutase
2308	 60.78	+2	2600230..2601723	-	497	30063884	-	S2705	-	putative transposase
2309	 60.89	+2	2601934..2602158	-	74	30063885	-	S2706	-	hypothetical protein
2310	 67.48	+2	2602155..2602892	-	245	30063886	parA	S2707	-	resolvase
2311	 62.16	+2	2603040..2603372	+	110	30063887	-	S2708	-	putative transcriptional regulator
2312	 62.11	+2	2603369..2604136	+	255	30063888	-	S2709	-	putative arsenical resistance protein
2313	 60.55	+2	2604133..2604639	+	168	30063889	-	S2710	-	arsenate reductase
2314	 62.83	+2	2604636..2605703	+	355	30063890	-	S2711	-	putative sodium bile acid symporter family protein
2315	 60.12	+2	2606599..2607087	-	162	30063891	-	S2715	-	hypothetical protein
2316	 53.04	0	2607237..2608043	-	268	30063892	trbL	S2716	-	putative mating pair formation protein
2317	 59.87	+2	2608282..2609061	-	259	30063893	trbJ	S2718	-	putative mating pair formation protein
2318	 52.38	0	2609202..2609390	-	62	30063894	-	S2719	-	putative stabilization protein
2319	 59.07	+1	2610423..2611304	-	293	30063895	repC	S2720	-	putative replication protein C
2320	 55.68	+1	2611291..2612118	-	275	30063896	-	S2721	-	putative DNA helicase
2321	 50.00	0	2612123..2612344	-	73	30063897	-	S2722	-	hypothetical protein
2322	 58.02	+1	2612492..2613694	-	400	30063898	-	S2723	-	putative integrase
2323	 53.99	0	2613999..2615576	-	525	30063899	guaA	S2725	-	bifunctional GMP synthase/glutamine amidotransferase protein
2324	 54.33	0	2615645..2617111	-	488	30063900	guaB	S2726	-	inositol-5-monophosphate dehydrogenase
2325	 53.25	0	2617273..2618643	+	456	30063901	xseA	S2727	-	exodeoxyribonuclease VII large subunit
2326	 47.22	-1	2618640..2618891	-	83	30063902	-	S2728	-	hypothetical protein
2327	 52.21	0	2618925..2620397	-	490	30063903	engA	S2729	-	GTP-binding protein EngA
2328	 53.35	0	2620515..2621693	-	392	30063904	-	S2730	-	outer membrane protein assembly complex subunit YfgL
2329	 49.92	0	2621704..2622324	-	206	30063905	-	S2731	-	hypothetical protein
2330	 54.35	0	2622342..2623616	-	424	30063906	hisS	S2732	-	histidyl-tRNA synthetase
2331	 53.19	0	2623719..2624846	-	375	30063907	ispG	S2733	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2332	 54.34	0	2624873..2625886	-	337	30063908	yfgA	S2734	-	hypothetical protein
2333	 52.73	0	2626171..2627325	-	384	30063909	yfgB	S2735	-	hypothetical protein
2334	 52.55	0	2627475..2627906	-	143	30063910	ndk	S2736	-	nucleoside diphosphate kinase
2335	 57.81	+1	2630171..2631367	-	398	30063911	-	S2738	-	ISSfl4 orf
2336	 47.23	-1	2632898..2633674	-	258	30063912	sseB	S2741	-	enhanced serine sensitivity protein SseB
2337	 56.07	+1	2633816..2635099	-	427	30063913	pepB	S2742	-	aminopeptidase B
2338	 50.75	0	2635158..2635358	-	66	30063914	yfhJ	S2743	-	hypothetical protein
2339	 52.68	0	2635370..2635705	-	111	30063915	fdx	S2744	-	[2FE-2S] ferredoxin, electron carrer protein
2340	 57.59	+1	2635707..2637557	-	616	30063916	hscA	S2745	-	chaperone protein HscA
2341	 51.94	0	2637574..2638089	-	171	30063917	hscB	S2746	-	co-chaperone HscB
2342	 50.62	0	2638185..2638508	-	107	30063918	iscA	S2747	-	iron-sulfur cluster assembly protein
2343	 49.35	0	2638525..2638911	-	128	30063919	-	S2748	-	scaffold protein
2344	 53.25	0	2638939..2640153	-	404	30063920	yfhO	S2749	-	cysteine desulfurase
2345	 53.78	0	2640265..2640753	-	162	30063921	-	S2750	-	DNA-binding transcriptional regulator IscR
2346	 54.79	0	2641023..2641763	-	246	30063922	-	S2751	-	putative ATP synthase beta subunit
2347	 53.86	0	2641882..2642685	+	267	30063923	suhB	S2752	-	inositol monophosphatase
2348	 50.41	0	2642830..2643684	+	284	30063924	-	S2753	-	putative enzyme
2349	 51.44	0	2643875..2645155	+	426	30063925	csiE	S2754	-	stationary phase inducible protein CsiE
2350	 56.40	+1	2645147..2646286	-	379	30063926	hcaT	S2755	-	putative 3-phenylpropionic acid transporter
2351	 49.94	0	2646446..2647336	-	296	30063927	hcaR	S2756	-	DNA-binding transcriptional regulator HcaR
2352	 53.08	0	2647472..2648833	+	453	30063928	hcaA1	S2757	-	large terminal subunit of phenylpropionate dioxygenase
2353	 52.79	0	2648830..2649348	+	172	30063929	hcaA2	S2758	-	3-phenylpropionate dioxygenase subunit beta
2354	 55.45	0	2649348..2649668	+	106	30063930	hcaC	S2759	-	3-phenylpropionate dioxygenase ferredoxin subunit
2355	 56.09	+1	2649665..2650477	+	270	30063931	hcaB	S2760	-	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase
2356	 48.89	0	2651734..2652228	+	164	30063932	yphA	S2762	-	hypothetical protein
2357	 55.10	0	2652276..2653148	-	290	30063933	yphB	S2763	-	hypothetical protein
2358	 54.16	0	2653160..2654254	-	364	30063934	yphC	S2764	-	putative oxidoreductase
2359	 55.26	0	2654287..2655285	-	332	30063935	yphD	S2765	-	putative transport system permease protein
2360	 55.16	0	2655310..2656821	-	503	30063936	yphE	S2766	-	putative ATP-binding component of a transport system
2361	 51.26	0	2661322..2662515	+	397	30063937	yphH	S2769	-	putative NAGC-like transcriptional regulator
2362	 53.11	0	2662713..2663966	-	417	30063938	glyA	S2770	-	serine hydroxymethyltransferase
2363	 52.39	0	2664293..2665483	+	396	30063939	hmpA	S2771	-	nitric oxide dioxygenase
2364	 51.03	0	2665528..2665866	-	112	30063940	glnB	S2772	-	nitrogen regulatory protein P-II 1
2365	 54.31	0	2665927..2667261	-	444	30063941	yfhA	S2773	-	putative 2-component transcriptional regulator
2366	 54.34	0	2667251..2667964	-	237	30063942	yfhG	S2774	-	hypothetical protein
2367	 52.38	0	2668129..2669619	-	496	30063943	yfhK	S2775	-	putative 2-component sensor protein
2368	 56.64	+1	2670114..2674001	-	1295	30063944	purL	S2776	-	phosphoribosylformylglycinamidine synthase
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.