IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2238	 55.92	+1	2514109..2515020	-	303	30063814	cysM	S2622	-	cysteine synthase B
2239	 58.47	+1	2515154..2516251	-	365	30063815	cysA	S2623	-	sulfate/thiosulfate transporter subunit
2240	 57.33	+1	2516241..2516690	-	149	30063816	cysW	S2624	-	sulfate transport system permease W protein
2241	 54.92	0	2517116..2517949	-	277	30063817	cysU	S2625	-	sulfate/thiosulfate transporter subunit
2242	 53.10	0	2517949..2518965	-	338	30063818	cysP	S2626	-	thiosulfate transporter subunit
2243	 54.80	0	2519269..2520060	-	263	30063819	ucpA	S2627	-	short chain dehydrogenase
2244	 52.43	0	2520247..2521047	-	266	30063820	yfeT	S2628	-	hypothetical protein
2245	 53.40	0	2521211..2522107	+	298	30063821	murQ	S2629	-	N-acetylmuramic acid-6-phosphate etherase
2246	 56.56	+1	2522111..2523535	+	474	30063822	murP	S2630	-	N-acetylmuramic acid phosphotransfer permease
2247	 55.89	+1	2523715..2524614	-	299	30063823	-	S2632	-	hypothetical protein
2248	 50.35	0	2524710..2525285	-	191	30063824	-	S2633	-	hypothetical protein
2249	 52.89	0	2525346..2525795	-	149	30063825	-	S2634	-	hypothetical protein
2250	 51.88	0	2525782..2526207	-	141	30063826	-	S2635	-	putative acetyltransferase
2251	 50.11	0	2526421..2527290	+	289	30063827	amiA	S2636	-	N-acetylmuramoyl-l-alanine amidase I
2252	 55.97	+1	2528200..2528760	-	186	30063828	yfeG	S2638	-	putative ARAC-type regulatory protein
2253	 57.68	+1	2529298..2529798	-	166	30063829	-	S2639	-	hypothetical protein
2254	 56.36	+1	2529811..2530470	-	219	30063830	-	S2641	-	hypothetical protein
2255	 51.24	0	2531823..2532224	+	133	30063831	-	S2642	-	hypothetical protein
2256	 41.92	-2	2533162..2533557	+	131	30063832	-	S2643	-	hypothetical protein
2257	 45.45	-1	2533575..2533838	+	87	30063833	-	S2644	-	hypothetical protein
2258	 48.80	0	2533861..2534403	+	180	30063834	-	S2645	-	hypothetical protein
2259	 47.58	0	2534500..2534829	+	109	30063835	-	S2646	-	hypothetical protein
2260	 47.34	-1	2534868..2535074	+	68	30063836	-	S2647	-	hypothetical protein
2261	 49.30	0	2535659..2535871	+	70	30063837	-	S2648	-	hypothetical protein
2262	 39.90	-2	2536123..2537583	+	486	30063838	-	S2649	-	putative amino acid antiporter
2263	 51.77	0	2538545..2538940	-	131	30063839	-	S2650	-	iso-IS1 ORF2
2264	 48.72	0	2538967..2539239	-	90	30063840	-	S2651	-	IS1N orfA
2265	 49.79	0	2541106..2541585	-	159	30063841	-	S2654	-	hypothetical protein
2266	 49.02	0	2541598..2542005	-	135	30063842	-	S2655	-	hypothetical protein
2267	 54.30	0	2542226..2544505	-	759	30063843	-	S2656	-	malic enzyme
2268	 49.84	0	2544794..2545744	+	316	30063844	talA	S2657	-	transaldolase A
2269	 54.49	0	2545764..2547767	+	667	30063845	tktB	S2658	-	transketolase
2270	 54.12	0	2547870..2548913	-	347	30063846	-	S2659	-	hypothetical protein
2271	 48.09	0	2549039..2549614	-	191	30063847	yffH	S2660	-	hypothetical protein
2272	 55.51	0	2549682..2551661	-	659	30063848	yffG	S2661	-	putative oxidoreductase Fe-S binding subunit
2273	 54.24	0	2553786..2556899	+	1037	30063849	acrD	S2663	-	aminoglycoside/multidrug efflux system
2274	 47.06	-1	2557438..2557794	+	118	30063850	yffB	S2664	-	hypothetical protein
2275	 53.10	0	2557798..2558925	+	375	30063851	dapE	S2665	-	succinyl-diaminopimelate desuccinylase
2276	 53.65	0	2559263..2559961	-	232	30063852	ypfH	S2666	-	esterase YpfH
2277	 55.16	0	2560035..2562050	-	671	30063853	ypfI	S2667	-	hypothetical protein
2278	 53.59	0	2562065..2562928	-	287	30063854	-	S2668	-	hypothetical protein
2279	 52.10	0	2563096..2563809	-	237	30063855	purC	S2669	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2280	 55.36	0	2564022..2565056	-	344	30063856	nlpB	S2670	-	lipoprotein
2281	 51.65	0	2565073..2565951	-	292	30063857	dapA	S2671	-	dihydrodipicolinate synthase
2282	 49.26	0	2566669..2567139	+	156	30063858	bcp	S2673	-	thioredoxin-dependent thiol peroxidase
2283	 56.80	+1	2567392..2568009	+	205	30063859	hyfA	S2674	-	hydrogenase 4 Fe-S subunit
2284	 53.38	0	2570037..2570984	+	315	30063860	hyfC	S2676	-	hydrogenase 4 membrane subunit
2285	 55.56	0	2571001..2572440	+	479	30063861	hyfD	S2677	-	hydrogenase 4 subunit D
2286	 53.30	0	2572452..2573102	+	216	30063862	hyfE	S2678	-	hydrogenase 4 membrane subunit
2287	 54.19	0	2573107..2574693	+	528	30063863	hyfF	S2679	-	hydrogenase 4 subunit F
2288	 55.31	0	2576407..2576952	+	181	30063864	hyfH	S2681	-	hydrogenase 4 subunit H
2289	 56.39	+1	2576949..2577707	+	252	30063865	hyfI	S2682	-	hydrogenase 4 Fe-S subunit
2290	 51.99	0	2577637..2578113	+	158	30063866	-	S2683	-	putative protein processing element
2291	 54.05	0	2581143..2582204	-	353	30063867	perM	S2686	-	putative permease
2292	 54.17	0	2582417..2583880	+	487	30063868	-	S2687	-	hypothetical protein
2293	 52.22	0	2583901..2584260	+	119	30063869	-	S2688	-	putative oxidoreductase
2294	 53.15	0	2584393..2585139	-	248	30063870	-	S2689	-	DNA replication initiation factor
2295	 51.86	0	2585189..2586478	-	429	30063871	uraA	S2690	-	uracil transporter
2296	 53.11	0	2586564..2587190	-	208	30063872	upp	S2691	-	uracil phosphoribosyltransferase
2297	 53.66	0	2587499..2588551	+	350	30063873	purM	S2692	-	phosphoribosylaminoimidazole synthetase
2298	 53.52	0	2588551..2589189	+	212	30063874	purN	S2693	-	phosphoribosylglycinamide formyltransferase
2299	 48.67	0	2589361..2591427	+	688	30063875	ppk	S2694	-	polyphosphate kinase
2300	 51.04	0	2591432..2592973	+	513	30063876	ppx	S2695	-	exopolyphosphatase
2301	 46.20	-1	2594187..2594489	+	100	30063877	-	S2697	-	IS600 orfA
2302	 52.24	0	2594630..2595343	+	237	30063878	-	S2698	-	IS600 orfB
2303	 48.96	0	2596873..2597064	+	63	30063879	-	S2700	-	hypothetical protein
2304	 47.21	-1	2597375..2597893	+	172	30063880	-	S2701	-	putative outer membrane lipoprotein
2305	 49.26	0	2597909..2598448	+	179	30063881	-	S2702	-	hypothetical protein
2306	 60.78	+2	2598850..2599665	+	271	30063882	-	S2703	-	dihydropteroate synthase
2307	 58.09	+1	2599752..2600054	+	100	30063883	-	S2704	-	phosphoglucosamine mutase
2308	 60.78	+2	2600230..2601723	-	497	30063884	-	S2705	-	putative transposase
2309	 60.89	+2	2601934..2602158	-	74	30063885	-	S2706	-	hypothetical protein
2310	 67.48	+2	2602155..2602892	-	245	30063886	parA	S2707	-	resolvase
2311	 62.16	+2	2603040..2603372	+	110	30063887	-	S2708	-	putative transcriptional regulator
2312	 62.11	+2	2603369..2604136	+	255	30063888	-	S2709	-	putative arsenical resistance protein
2313	 60.55	+2	2604133..2604639	+	168	30063889	-	S2710	-	arsenate reductase
2314	 62.83	+2	2604636..2605703	+	355	30063890	-	S2711	-	putative sodium bile acid symporter family protein
2315	 60.12	+2	2606599..2607087	-	162	30063891	-	S2715	-	hypothetical protein
2316	 53.04	0	2607237..2608043	-	268	30063892	trbL	S2716	-	putative mating pair formation protein
2317	 59.87	+2	2608282..2609061	-	259	30063893	trbJ	S2718	-	putative mating pair formation protein
2318	 52.38	0	2609202..2609390	-	62	30063894	-	S2719	-	putative stabilization protein
2319	 59.07	+1	2610423..2611304	-	293	30063895	repC	S2720	-	putative replication protein C
2320	 55.68	+1	2611291..2612118	-	275	30063896	-	S2721	-	putative DNA helicase
2321	 50.00	0	2612123..2612344	-	73	30063897	-	S2722	-	hypothetical protein
2322	 58.02	+1	2612492..2613694	-	400	30063898	-	S2723	-	putative integrase
2323	 53.99	0	2613999..2615576	-	525	30063899	guaA	S2725	-	bifunctional GMP synthase/glutamine amidotransferase protein
2324	 54.33	0	2615645..2617111	-	488	30063900	guaB	S2726	-	inositol-5-monophosphate dehydrogenase
2325	 53.25	0	2617273..2618643	+	456	30063901	xseA	S2727	-	exodeoxyribonuclease VII large subunit
2326	 47.22	-1	2618640..2618891	-	83	30063902	-	S2728	-	hypothetical protein
2327	 52.21	0	2618925..2620397	-	490	30063903	engA	S2729	-	GTP-binding protein EngA
2328	 53.35	0	2620515..2621693	-	392	30063904	-	S2730	-	outer membrane protein assembly complex subunit YfgL
2329	 49.92	0	2621704..2622324	-	206	30063905	-	S2731	-	hypothetical protein
2330	 54.35	0	2622342..2623616	-	424	30063906	hisS	S2732	-	histidyl-tRNA synthetase
2331	 53.19	0	2623719..2624846	-	375	30063907	ispG	S2733	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2332	 54.34	0	2624873..2625886	-	337	30063908	yfgA	S2734	-	hypothetical protein
2333	 52.73	0	2626171..2627325	-	384	30063909	yfgB	S2735	-	hypothetical protein
2334	 52.55	0	2627475..2627906	-	143	30063910	ndk	S2736	-	nucleoside diphosphate kinase
2335	 57.81	+1	2630171..2631367	-	398	30063911	-	S2738	-	ISSfl4 orf
2336	 47.23	-1	2632898..2633674	-	258	30063912	sseB	S2741	-	enhanced serine sensitivity protein SseB
2337	 56.07	+1	2633816..2635099	-	427	30063913	pepB	S2742	-	aminopeptidase B
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.