IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2208	 38.04	-2	2475888..2476163	+	91	30063782	-	S2580	-	hypothetical protein
2209	 48.15	0	2476240..2476482	-	80	30063783	-	S2581	-	hypothetical protein
2210	 51.36	0	2476835..2477755	+	306	161486455	ddg	S2582	-	lipid A biosynthesis palmitoleoyl acyltransferase
2211	 55.13	0	2478246..2479484	-	412	30063785	-	S2583	-	aminotransferase
2212	 47.48	-1	2481362..2482096	+	244	30063786	-	S2585	-	putative 2-component transcriptional regulator
2213	 54.45	0	2482109..2482681	+	190	30063787	-	S2586	-	putative ARAC-type regulatory protein
2214	 55.09	0	2482969..2485464	-	831	30063788	-	S2588	-	putative PTS system enzyme IIA component, enzyme I
2215	 57.42	+1	2485489..2486526	-	345	30063789	-	S2589	-	exoaminopeptidase
2216	 53.53	0	2487624..2488871	-	415	30063790	-	S2591	-	putative transport protein
2217	 50.46	0	2488893..2489219	-	108	30063791	-	S2592	-	putative PTS system enzyme IIB component
2218	 51.45	0	2489438..2490403	-	321	30063792	glk	S2593	-	glucokinase
2219	 53.86	0	2490607..2491863	+	418	30063793	-	S2594	-	hypothetical protein
2220	 52.29	0	2491978..2492304	+	108	30063794	-	S2595	-	hypothetical protein
2221	 53.03	0	2492445..2493683	-	412	30063796	mntH	S2597	-	manganese transport protein MntH
2222	 49.46	0	2494019..2495221	+	400	30063797	nupC	S2598	-	permease of transport system for 3 nucleosides
2223	 50.14	0	2498017..2498361	+	114	30063799	yfeC	S2603	-	hypothetical protein
2224	 47.58	0	2498384..2498755	+	123	30063800	yfeD	S2604	-	hypothetical protein
2225	 52.54	0	2498807..2500222	-	471	30063801	gltX	S2605	-	glutamyl-tRNA synthetase
2226	 42.98	-2	2501032..2501373	+	113	30063802	flxA	S2609	-	hypothetical protein
2227	 53.72	0	2501364..2502290	-	308	30063803	yfeR	S2610	-	putative LYSR-type transcriptional regulator
2228	 51.65	0	2502380..2503378	+	332	30063804	yfeH	S2611	-	putative cytochrome oxidase
2229	 54.27	0	2503595..2505610	-	671	30063805	ligA	S2612	-	NAD-dependent DNA ligase LigA
2230	 55.39	0	2505681..2506664	-	327	30063806	zipA	S2613	-	cell division protein ZipA
2231	 49.87	0	2506897..2507658	+	253	30063807	cysZ	S2614	-	putative sulfate transport protein CysZ
2232	 50.10	0	2507843..2508814	+	323	30063808	cysK	S2615	-	cysteine synthase A
2233	 50.78	0	2509198..2509455	+	85	30063809	ptsH	S2616	-	phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)
2234	 49.71	0	2509500..2511227	+	575	30063810	ptsI	S2617	-	phosphoenolpyruvate-protein phosphotransferase
2235	 46.86	-1	2511268..2511777	+	169	30063811	crr	S2618	-	glucose-specific PTS system component
2236	 51.88	0	2511819..2512670	-	283	30063812	pdxK	S2619	-	pyridoxal kinase
2237	 48.53	0	2512775..2513149	+	124	30063813	yfeK	S2620	-	hypothetical protein
2238	 55.92	+1	2514109..2515020	-	303	30063814	cysM	S2622	-	cysteine synthase B
2239	 58.47	+1	2515154..2516251	-	365	30063815	cysA	S2623	-	sulfate/thiosulfate transporter subunit
2240	 57.33	+1	2516241..2516690	-	149	30063816	cysW	S2624	-	sulfate transport system permease W protein
2241	 54.92	0	2517116..2517949	-	277	30063817	cysU	S2625	-	sulfate/thiosulfate transporter subunit
2242	 53.10	0	2517949..2518965	-	338	30063818	cysP	S2626	-	thiosulfate transporter subunit
2243	 54.80	0	2519269..2520060	-	263	30063819	ucpA	S2627	-	short chain dehydrogenase
2244	 52.43	0	2520247..2521047	-	266	30063820	yfeT	S2628	-	hypothetical protein
2245	 53.40	0	2521211..2522107	+	298	30063821	murQ	S2629	-	N-acetylmuramic acid-6-phosphate etherase
2246	 56.56	+1	2522111..2523535	+	474	30063822	murP	S2630	-	N-acetylmuramic acid phosphotransfer permease
2247	 55.89	+1	2523715..2524614	-	299	30063823	-	S2632	-	hypothetical protein
2248	 50.35	0	2524710..2525285	-	191	30063824	-	S2633	-	hypothetical protein
2249	 52.89	0	2525346..2525795	-	149	30063825	-	S2634	-	hypothetical protein
2250	 51.88	0	2525782..2526207	-	141	30063826	-	S2635	-	putative acetyltransferase
2251	 50.11	0	2526421..2527290	+	289	30063827	amiA	S2636	-	N-acetylmuramoyl-l-alanine amidase I
2252	 55.97	+1	2528200..2528760	-	186	30063828	yfeG	S2638	-	putative ARAC-type regulatory protein
2253	 57.68	+1	2529298..2529798	-	166	30063829	-	S2639	-	hypothetical protein
2254	 56.36	+1	2529811..2530470	-	219	30063830	-	S2641	-	hypothetical protein
2255	 51.24	0	2531823..2532224	+	133	30063831	-	S2642	-	hypothetical protein
2256	 41.92	-2	2533162..2533557	+	131	30063832	-	S2643	-	hypothetical protein
2257	 45.45	-1	2533575..2533838	+	87	30063833	-	S2644	-	hypothetical protein
2258	 48.80	0	2533861..2534403	+	180	30063834	-	S2645	-	hypothetical protein
2259	 47.58	0	2534500..2534829	+	109	30063835	-	S2646	-	hypothetical protein
2260	 47.34	-1	2534868..2535074	+	68	30063836	-	S2647	-	hypothetical protein
2261	 49.30	0	2535659..2535871	+	70	30063837	-	S2648	-	hypothetical protein
2262	 39.90	-2	2536123..2537583	+	486	30063838	-	S2649	-	putative amino acid antiporter
2263	 51.77	0	2538545..2538940	-	131	30063839	-	S2650	-	iso-IS1 ORF2
2264	 48.72	0	2538967..2539239	-	90	30063840	-	S2651	-	IS1N orfA
2265	 49.79	0	2541106..2541585	-	159	30063841	-	S2654	-	hypothetical protein
2266	 49.02	0	2541598..2542005	-	135	30063842	-	S2655	-	hypothetical protein
2267	 54.30	0	2542226..2544505	-	759	30063843	-	S2656	-	malic enzyme
2268	 49.84	0	2544794..2545744	+	316	30063844	talA	S2657	-	transaldolase A
2269	 54.49	0	2545764..2547767	+	667	30063845	tktB	S2658	-	transketolase
2270	 54.12	0	2547870..2548913	-	347	30063846	-	S2659	-	hypothetical protein
2271	 48.09	0	2549039..2549614	-	191	30063847	yffH	S2660	-	hypothetical protein
2272	 55.51	0	2549682..2551661	-	659	30063848	yffG	S2661	-	putative oxidoreductase Fe-S binding subunit
2273	 54.24	0	2553786..2556899	+	1037	30063849	acrD	S2663	-	aminoglycoside/multidrug efflux system
2274	 47.06	-1	2557438..2557794	+	118	30063850	yffB	S2664	-	hypothetical protein
2275	 53.10	0	2557798..2558925	+	375	30063851	dapE	S2665	-	succinyl-diaminopimelate desuccinylase
2276	 53.65	0	2559263..2559961	-	232	30063852	ypfH	S2666	-	esterase YpfH
2277	 55.16	0	2560035..2562050	-	671	30063853	ypfI	S2667	-	hypothetical protein
2278	 53.59	0	2562065..2562928	-	287	30063854	-	S2668	-	hypothetical protein
2279	 52.10	0	2563096..2563809	-	237	30063855	purC	S2669	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2280	 55.36	0	2564022..2565056	-	344	30063856	nlpB	S2670	-	lipoprotein
2281	 51.65	0	2565073..2565951	-	292	30063857	dapA	S2671	-	dihydrodipicolinate synthase
2282	 49.26	0	2566669..2567139	+	156	30063858	bcp	S2673	-	thioredoxin-dependent thiol peroxidase
2283	 56.80	+1	2567392..2568009	+	205	30063859	hyfA	S2674	-	hydrogenase 4 Fe-S subunit
2284	 53.38	0	2570037..2570984	+	315	30063860	hyfC	S2676	-	hydrogenase 4 membrane subunit
2285	 55.56	0	2571001..2572440	+	479	30063861	hyfD	S2677	-	hydrogenase 4 subunit D
2286	 53.30	0	2572452..2573102	+	216	30063862	hyfE	S2678	-	hydrogenase 4 membrane subunit
2287	 54.19	0	2573107..2574693	+	528	30063863	hyfF	S2679	-	hydrogenase 4 subunit F
2288	 55.31	0	2576407..2576952	+	181	30063864	hyfH	S2681	-	hydrogenase 4 subunit H
2289	 56.39	+1	2576949..2577707	+	252	30063865	hyfI	S2682	-	hydrogenase 4 Fe-S subunit
2290	 51.99	0	2577637..2578113	+	158	30063866	-	S2683	-	putative protein processing element
2291	 54.05	0	2581143..2582204	-	353	30063867	perM	S2686	-	putative permease
2292	 54.17	0	2582417..2583880	+	487	30063868	-	S2687	-	hypothetical protein
2293	 52.22	0	2583901..2584260	+	119	30063869	-	S2688	-	putative oxidoreductase
2294	 53.15	0	2584393..2585139	-	248	30063870	-	S2689	-	DNA replication initiation factor
2295	 51.86	0	2585189..2586478	-	429	30063871	uraA	S2690	-	uracil transporter
2296	 53.11	0	2586564..2587190	-	208	30063872	upp	S2691	-	uracil phosphoribosyltransferase
2297	 53.66	0	2587499..2588551	+	350	30063873	purM	S2692	-	phosphoribosylaminoimidazole synthetase
2298	 53.52	0	2588551..2589189	+	212	30063874	purN	S2693	-	phosphoribosylglycinamide formyltransferase
2299	 48.67	0	2589361..2591427	+	688	30063875	ppk	S2694	-	polyphosphate kinase
2300	 51.04	0	2591432..2592973	+	513	30063876	ppx	S2695	-	exopolyphosphatase
2301	 46.20	-1	2594187..2594489	+	100	30063877	-	S2697	-	IS600 orfA
2302	 52.24	0	2594630..2595343	+	237	30063878	-	S2698	-	IS600 orfB
2303	 48.96	0	2596873..2597064	+	63	30063879	-	S2700	-	hypothetical protein
2304	 47.21	-1	2597375..2597893	+	172	30063880	-	S2701	-	putative outer membrane lipoprotein
2305	 49.26	0	2597909..2598448	+	179	30063881	-	S2702	-	hypothetical protein
2306	 60.78	+2	2598850..2599665	+	271	30063882	-	S2703	-	dihydropteroate synthase
2307	 58.09	+1	2599752..2600054	+	100	30063883	-	S2704	-	phosphoglucosamine mutase
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.