IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2152	 51.27	0	2406803..2407354	-	183	30063726	yfcE	S2511	-	phosphodiesterase
2153	 51.94	0	2407410..2408054	-	214	30063727	yfcF	S2512	-	hypothetical protein
2154	 50.93	0	2408190..2408837	+	215	30063728	yfcG	S2513	-	putative S-transferase
2155	 44.90	-1	2408894..2409256	+	120	30063729	folX	S2514	-	D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase
2156	 55.15	0	2409277..2410170	+	297	30063730	-	S2515	-	putative sugar nucleotide epimerase
2157	 45.01	-1	2410218..2411108	-	296	30063731	yfcI	S2516	-	hypothetical protein
2158	 51.68	0	2411305..2412078	-	257	30063732	hisP	S2517	-	histidine/lysine/arginine/ornithine transporter subunit
2159	 50.07	0	2412086..2412802	-	238	30063733	hisM	S2518	-	histidine transport, membrane protein M
2160	 53.42	0	2412799..2413485	-	228	30063734	hisQ	S2519	-	histidine transport system permease protein
2161	 49.55	0	2413575..2414357	-	260	30063735	hisJ	S2520	-	histidine-binding periplasmic protein of high-affinity histidine transport system
2162	 49.81	0	2414578..2415360	-	260	30063736	argT	S2521	-	lysine-, arginine-, ornithine-binding periplasmic protein
2163	 53.16	0	2415626..2416195	-	189	30063737	ubiX	S2522	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2164	 52.83	0	2416290..2417807	-	505	30063738	purF	S2523	-	amidophosphoribosyltransferase
2165	 49.08	0	2417844..2418332	-	162	30063739	cvpA	S2524	-	colicin V production protein
2166	 57.01	+1	2418591..2419253	-	220	161486458	dedD	S2525	-	hypothetical protein
2167	 55.95	+1	2419243..2420511	-	422	30063741	folC	S2526	-	bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
2168	 55.19	0	2420581..2421495	-	304	30063742	accD	S2527	-	acetyl-CoA carboxylase subunit beta
2169	 48.18	0	2421651..2422310	-	219	30063743	dedA	S2528	-	hypothetical protein
2170	 55.60	0	2422393..2423205	-	270	30063744	truA	S2529	-	tRNA pseudouridine synthase A
2171	 55.42	0	2423205..2424218	-	337	30063745	usg	S2530	-	putative semialdehyde dehydrogenase
2172	 53.65	0	2424284..2425420	-	378	30063746	pdxB	S2531	-	erythronate-4-phosphate dehydrogenase
2173	 52.51	0	2425519..2426514	+	331	30063747	div	S2532	-	flagella biosynthesis regulator
2174	 56.91	+1	2426511..2427689	-	392	30063748	-	S2533	-	hypothetical protein
2175	 56.12	+1	2427944..2429185	-	413	30063749	fabB	S2534	-	3-oxoacyl-(acyl carrier protein) synthase I
2176	 52.17	0	2429344..2431350	+	668	161486457	mnmC	S2535	-	5-methylaminomethyl-2-thiouridine methyltransferase
2177	 53.41	0	2431471..2431749	-	92	30063751	-	S2536	-	hypothetical protein
2178	 50.27	0	2431783..2432331	-	182	30063752	-	S2537	-	putative transporting ATPase
2179	 52.59	0	2432331..2433140	-	269	30063753	yfcA	S2538	-	hypothetical protein
2180	 55.15	0	2433140..2433964	-	274	30063754	mepA	S2539	-	penicillin-insensitive murein endopeptidase
2181	 56.63	+1	2433968..2435053	-	361	30063755	aroC	S2540	-	chorismate synthase
2182	 51.18	0	2435088..2436353	-	421	30063756	yfcB	S2542	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
2183	 52.90	0	2436186..2436737	+	183	30063757	-	S2541	-	hypothetical protein
2184	 45.92	-1	2442723..2443286	-	187	30063758	-	S2550	-	putative fimbrial-like protein
2185	 52.78	0	2443555..2444058	-	167	30063759	-	S2551	-	IS1 orfB
2186	 52.90	0	2443977..2444252	-	91	30063760	-	S2552	-	IS1 orfA
2187	 52.88	0	2444747..2445232	-	161	30063761	-	S2553	-	phosphohistidine phosphatase
2188	 52.03	0	2445435..2447579	-	714	30063762	fadJ	S2554	-	multifunctional fatty acid oxidation complex subunit alpha
2189	 55.53	0	2447579..2448889	-	436	30063763	fadI	S2555	-	3-ketoacyl-CoA thiolase
2190	 51.46	0	2449069..2449377	-	102	30063764	-	S2556	-	hypothetical protein
2191	 49.96	0	2449725..2451065	+	446	30063765	fadL	S2557	-	long-chain fatty acid outer membrane transporter
2192	 34.84	-2	2451431..2452489	+	352	30063766	-	S2558	-	hypothetical protein
2193	 52.38	0	2452671..2453426	-	251	30063767	vacJ	S2559	-	lipoprotein precursor
2194	 48.78	0	2453831..2454652	+	273	30063768	yfdC	S2560	-	putative transport protein
2195	 44.88	-1	2456297..2456599	-	100	30063769	-	S2565	-	IS911 orfA
2196	 56.27	+1	2456580..2457185	-	201	30063770	-	S2566	-	IS4 orf
2197	 51.12	0	2457501..2458934	+	477	30063771	-	S2470	-	hypothetical protein
2198	 51.65	0	2458942..2460000	-	352	30063772	-	S2568	-	sucrose specific repressor
2199	 50.56	0	2460404..2461732	+	442	30063773	dsdA	S2570	-	D-serine dehydratase
2200	 41.78	-2	2461840..2463378	-	512	30063774	emrY	S2571	-	multidrug resistance protein Y
2201	 41.49	-2	2463378..2464541	-	387	30063775	emrK	S2572	-	multidrug resistance protein K
2202	 40.65	-2	2464957..2465571	+	204	30063776	evgA	S2573	-	DNA-binding transcriptional activator EvgA
2203	 40.73	-2	2465576..2469169	+	1197	30063777	evgS	S2574	-	hybrid sensory histidine kinase in two-component regulatory system with EvgA
2204	 44.98	-1	2469225..2470409	-	394	161486456	yfdE	S2575	-	hypothetical protein
2205	 46.49	-1	2471457..2473151	-	564	30063779	-	S2577	-	putative oxalyl-CoA decarboxylase
2206	 47.08	-1	2473205..2474455	-	416	30063780	-	S2578	-	formyl-coenzyme A transferase
2207	 46.15	-1	2474968..2475591	-	207	30063781	-	S2579	-	hypothetical protein
2208	 38.04	-2	2475888..2476163	+	91	30063782	-	S2580	-	hypothetical protein
2209	 48.15	0	2476240..2476482	-	80	30063783	-	S2581	-	hypothetical protein
2210	 51.36	0	2476835..2477755	+	306	161486455	ddg	S2582	-	lipid A biosynthesis palmitoleoyl acyltransferase
2211	 55.13	0	2478246..2479484	-	412	30063785	-	S2583	-	aminotransferase
2212	 47.48	-1	2481362..2482096	+	244	30063786	-	S2585	-	putative 2-component transcriptional regulator
2213	 54.45	0	2482109..2482681	+	190	30063787	-	S2586	-	putative ARAC-type regulatory protein
2214	 55.09	0	2482969..2485464	-	831	30063788	-	S2588	-	putative PTS system enzyme IIA component, enzyme I
2215	 57.42	+1	2485489..2486526	-	345	30063789	-	S2589	-	exoaminopeptidase
2216	 53.53	0	2487624..2488871	-	415	30063790	-	S2591	-	putative transport protein
2217	 50.46	0	2488893..2489219	-	108	30063791	-	S2592	-	putative PTS system enzyme IIB component
2218	 51.45	0	2489438..2490403	-	321	30063792	glk	S2593	-	glucokinase
2219	 53.86	0	2490607..2491863	+	418	30063793	-	S2594	-	hypothetical protein
2220	 52.29	0	2491978..2492304	+	108	30063794	-	S2595	-	hypothetical protein
2221	 53.03	0	2492445..2493683	-	412	30063796	mntH	S2597	-	manganese transport protein MntH
2222	 49.46	0	2494019..2495221	+	400	30063797	nupC	S2598	-	permease of transport system for 3 nucleosides
2223	 50.14	0	2498017..2498361	+	114	30063799	yfeC	S2603	-	hypothetical protein
2224	 47.58	0	2498384..2498755	+	123	30063800	yfeD	S2604	-	hypothetical protein
2225	 52.54	0	2498807..2500222	-	471	30063801	gltX	S2605	-	glutamyl-tRNA synthetase
2226	 42.98	-2	2501032..2501373	+	113	30063802	flxA	S2609	-	hypothetical protein
2227	 53.72	0	2501364..2502290	-	308	30063803	yfeR	S2610	-	putative LYSR-type transcriptional regulator
2228	 51.65	0	2502380..2503378	+	332	30063804	yfeH	S2611	-	putative cytochrome oxidase
2229	 54.27	0	2503595..2505610	-	671	30063805	ligA	S2612	-	NAD-dependent DNA ligase LigA
2230	 55.39	0	2505681..2506664	-	327	30063806	zipA	S2613	-	cell division protein ZipA
2231	 49.87	0	2506897..2507658	+	253	30063807	cysZ	S2614	-	putative sulfate transport protein CysZ
2232	 50.10	0	2507843..2508814	+	323	30063808	cysK	S2615	-	cysteine synthase A
2233	 50.78	0	2509198..2509455	+	85	30063809	ptsH	S2616	-	phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)
2234	 49.71	0	2509500..2511227	+	575	30063810	ptsI	S2617	-	phosphoenolpyruvate-protein phosphotransferase
2235	 46.86	-1	2511268..2511777	+	169	30063811	crr	S2618	-	glucose-specific PTS system component
2236	 51.88	0	2511819..2512670	-	283	30063812	pdxK	S2619	-	pyridoxal kinase
2237	 48.53	0	2512775..2513149	+	124	30063813	yfeK	S2620	-	hypothetical protein
2238	 55.92	+1	2514109..2515020	-	303	30063814	cysM	S2622	-	cysteine synthase B
2239	 58.47	+1	2515154..2516251	-	365	30063815	cysA	S2623	-	sulfate/thiosulfate transporter subunit
2240	 57.33	+1	2516241..2516690	-	149	30063816	cysW	S2624	-	sulfate transport system permease W protein
2241	 54.92	0	2517116..2517949	-	277	30063817	cysU	S2625	-	sulfate/thiosulfate transporter subunit
2242	 53.10	0	2517949..2518965	-	338	30063818	cysP	S2626	-	thiosulfate transporter subunit
2243	 54.80	0	2519269..2520060	-	263	30063819	ucpA	S2627	-	short chain dehydrogenase
2244	 52.43	0	2520247..2521047	-	266	30063820	yfeT	S2628	-	hypothetical protein
2245	 53.40	0	2521211..2522107	+	298	30063821	murQ	S2629	-	N-acetylmuramic acid-6-phosphate etherase
2246	 56.56	+1	2522111..2523535	+	474	30063822	murP	S2630	-	N-acetylmuramic acid phosphotransfer permease
2247	 55.89	+1	2523715..2524614	-	299	30063823	-	S2632	-	hypothetical protein
2248	 50.35	0	2524710..2525285	-	191	30063824	-	S2633	-	hypothetical protein
2249	 52.89	0	2525346..2525795	-	149	30063825	-	S2634	-	hypothetical protein
2250	 51.88	0	2525782..2526207	-	141	30063826	-	S2635	-	putative acetyltransferase
2251	 50.11	0	2526421..2527290	+	289	30063827	amiA	S2636	-	N-acetylmuramoyl-l-alanine amidase I
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.