IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2107	 53.59	0	2355920..2356462	-	180	30063681	-	S2462	-	hypothetical protein
2108	 47.93	0	2356804..2357166	+	120	30063682	yfaO	S2463	-	hypothetical protein
2109	 43.18	-2	2357205..2357783	-	192	30063683	ais	S2464	-	protein induced by aluminum
2110	 51.84	0	2358115..2359254	+	379	161486464	-	S2465	-	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
2111	 49.54	0	2359258..2360226	+	322	30063685	-	S2466	-	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase
2112	 51.32	0	2360657..2362207	+	516	30063686	ybfG	S2467	-	hypothetical protein
2113	 52.75	0	2362204..2363094	+	296	30063687	-	S2468	-	hypothetical protein
2114	 51.12	0	2363094..2364746	+	550	30063688	arnT	S2469	-	4-amino-4-deoxy-L-arabinose transferase
2115	 53.27	0	2364743..2365078	+	111	30063689	-	S2567	-	sucrose-6 phosphate hydrolase
2116	 47.80	0	2365078..2365464	+	128	161486463	-	S2471	-	hypothetical protein
2117	 56.19	+1	2365835..2367190	-	451	30063691	menE	S2473	-	O-succinylbenzoic acid--CoA ligase
2118	 59.19	+1	2367187..2368149	-	320	30063692	menC	S2474	-	O-succinylbenzoate synthase
2119	 55.13	0	2368149..2369006	-	285	30063693	menB	S2475	-	naphthoate synthase
2120	 56.13	+1	2369021..2369779	-	252	30063694	yfbB	S2476	-	acyl-CoA thioester hydrolase YfbB
2121	 57.93	+1	2369776..2371446	-	556	30063695	menD	S2477	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
2122	 53.63	0	2371535..2372830	-	431	161486462	menF	S2478	-	menaquinone-specific isochorismate synthase
2123	 51.96	0	2372909..2373214	-	101	30063697	elaB	S2479	-	hypothetical protein
2124	 47.62	0	2373269..2373730	-	153	30063698	elaA	S2480	-	hypothetical protein
2125	 50.65	0	2373795..2374712	+	305	161486461	elaC	S2481	-	ribonuclease Z
2126	 52.90	0	2375148..2375423	+	91	30063700	-	S2482	-	IS1 orfA
2127	 53.37	0	2375342..2375845	+	167	30063701	-	S2483	-	IS1 orfB
2128	 57.27	+1	2377618..2379075	-	485	161486460	nuoN	S2487	-	NADH dehydrogenase subunit N
2129	 54.97	0	2379082..2380611	-	509	30063703	nuoM	S2488	-	NADH dehydrogenase subunit M
2130	 57.00	+1	2380775..2382616	-	613	30063704	nuoL	S2489	-	NADH dehydrogenase subunit L
2131	 54.46	0	2382613..2382915	-	100	30063705	nuoK	S2490	-	NADH dehydrogenase subunit K
2132	 54.05	0	2382912..2383466	-	184	30063706	nuoJ	S2491	-	NADH dehydrogenase subunit J
2133	 53.78	0	2383478..2384020	-	180	30063707	nuoI	S2492	-	NADH dehydrogenase subunit I
2134	 54.40	0	2384035..2385012	-	325	30063708	nuoH	S2493	-	NADH dehydrogenase subunit H
2135	 56.29	+1	2385009..2387735	-	908	30063709	nuoG	S2494	-	NADH dehydrogenase subunit G
2136	 56.58	+1	2387788..2389125	-	445	30063710	nuoF	S2495	-	NADH dehydrogenase I subunit F
2137	 55.29	0	2389122..2389622	-	166	30063711	nuoE	S2496	-	NADH dehydrogenase subunit E
2138	 55.80	+1	2389625..2391427	-	600	30063712	nuoC	S2497	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
2139	 51.89	0	2391521..2392183	-	220	30063713	nuoB	S2498	-	NADH dehydrogenase subunit B
2140	 53.38	0	2392199..2392642	-	147	30063714	nuoA	S2499	-	NADH dehydrogenase subunit A
2141	 49.84	0	2393273..2394211	-	312	30063715	lrhA	S2500	-	LysR family NADH dehydrogenase transcriptional regulator
2142	 50.41	0	2395130..2396347	+	405	30063716	-	S2501	-	aminotransferase AlaT
2143	 49.67	0	2396431..2397030	+	199	30063717	-	S2502	-	hypothetical protein
2144	 52.43	0	2397089..2398921	-	610	30063718	yfbS	S2503	-	putative transport protein
2145	 56.07	+1	2399008..2399658	-	216	30063719	yfbT	S2504	-	putative phosphatase
2146	 47.27	-1	2399669..2400163	-	164	30063720	-	S2505	-	hypothetical protein
2147	 50.00	0	2400246..2400701	-	151	30063721	-	S2506	-	hypothetical protein
2148	 52.37	0	2401039..2402241	+	400	30063722	ackA	S2507	-	acetate kinase
2149	 55.48	0	2402316..2404460	+	714	30063723	pta	S2508	-	phosphate acetyltransferase
2150	 51.61	0	2404650..2406170	+	506	161486459	yfcC	S2509	-	hypothetical protein
2151	 53.59	0	2406203..2406745	-	180	30063725	-	S2510	-	putative regulator
2152	 51.27	0	2406803..2407354	-	183	30063726	yfcE	S2511	-	phosphodiesterase
2153	 51.94	0	2407410..2408054	-	214	30063727	yfcF	S2512	-	hypothetical protein
2154	 50.93	0	2408190..2408837	+	215	30063728	yfcG	S2513	-	putative S-transferase
2155	 44.90	-1	2408894..2409256	+	120	30063729	folX	S2514	-	D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase
2156	 55.15	0	2409277..2410170	+	297	30063730	-	S2515	-	putative sugar nucleotide epimerase
2157	 45.01	-1	2410218..2411108	-	296	30063731	yfcI	S2516	-	hypothetical protein
2158	 51.68	0	2411305..2412078	-	257	30063732	hisP	S2517	-	histidine/lysine/arginine/ornithine transporter subunit
2159	 50.07	0	2412086..2412802	-	238	30063733	hisM	S2518	-	histidine transport, membrane protein M
2160	 53.42	0	2412799..2413485	-	228	30063734	hisQ	S2519	-	histidine transport system permease protein
2161	 49.55	0	2413575..2414357	-	260	30063735	hisJ	S2520	-	histidine-binding periplasmic protein of high-affinity histidine transport system
2162	 49.81	0	2414578..2415360	-	260	30063736	argT	S2521	-	lysine-, arginine-, ornithine-binding periplasmic protein
2163	 53.16	0	2415626..2416195	-	189	30063737	ubiX	S2522	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2164	 52.83	0	2416290..2417807	-	505	30063738	purF	S2523	-	amidophosphoribosyltransferase
2165	 49.08	0	2417844..2418332	-	162	30063739	cvpA	S2524	-	colicin V production protein
2166	 57.01	+1	2418591..2419253	-	220	161486458	dedD	S2525	-	hypothetical protein
2167	 55.95	+1	2419243..2420511	-	422	30063741	folC	S2526	-	bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
2168	 55.19	0	2420581..2421495	-	304	30063742	accD	S2527	-	acetyl-CoA carboxylase subunit beta
2169	 48.18	0	2421651..2422310	-	219	30063743	dedA	S2528	-	hypothetical protein
2170	 55.60	0	2422393..2423205	-	270	30063744	truA	S2529	-	tRNA pseudouridine synthase A
2171	 55.42	0	2423205..2424218	-	337	30063745	usg	S2530	-	putative semialdehyde dehydrogenase
2172	 53.65	0	2424284..2425420	-	378	30063746	pdxB	S2531	-	erythronate-4-phosphate dehydrogenase
2173	 52.51	0	2425519..2426514	+	331	30063747	div	S2532	-	flagella biosynthesis regulator
2174	 56.91	+1	2426511..2427689	-	392	30063748	-	S2533	-	hypothetical protein
2175	 56.12	+1	2427944..2429185	-	413	30063749	fabB	S2534	-	3-oxoacyl-(acyl carrier protein) synthase I
2176	 52.17	0	2429344..2431350	+	668	161486457	mnmC	S2535	-	5-methylaminomethyl-2-thiouridine methyltransferase
2177	 53.41	0	2431471..2431749	-	92	30063751	-	S2536	-	hypothetical protein
2178	 50.27	0	2431783..2432331	-	182	30063752	-	S2537	-	putative transporting ATPase
2179	 52.59	0	2432331..2433140	-	269	30063753	yfcA	S2538	-	hypothetical protein
2180	 55.15	0	2433140..2433964	-	274	30063754	mepA	S2539	-	penicillin-insensitive murein endopeptidase
2181	 56.63	+1	2433968..2435053	-	361	30063755	aroC	S2540	-	chorismate synthase
2182	 51.18	0	2435088..2436353	-	421	30063756	yfcB	S2542	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
2183	 52.90	0	2436186..2436737	+	183	30063757	-	S2541	-	hypothetical protein
2184	 45.92	-1	2442723..2443286	-	187	30063758	-	S2550	-	putative fimbrial-like protein
2185	 52.78	0	2443555..2444058	-	167	30063759	-	S2551	-	IS1 orfB
2186	 52.90	0	2443977..2444252	-	91	30063760	-	S2552	-	IS1 orfA
2187	 52.88	0	2444747..2445232	-	161	30063761	-	S2553	-	phosphohistidine phosphatase
2188	 52.03	0	2445435..2447579	-	714	30063762	fadJ	S2554	-	multifunctional fatty acid oxidation complex subunit alpha
2189	 55.53	0	2447579..2448889	-	436	30063763	fadI	S2555	-	3-ketoacyl-CoA thiolase
2190	 51.46	0	2449069..2449377	-	102	30063764	-	S2556	-	hypothetical protein
2191	 49.96	0	2449725..2451065	+	446	30063765	fadL	S2557	-	long-chain fatty acid outer membrane transporter
2192	 34.84	-2	2451431..2452489	+	352	30063766	-	S2558	-	hypothetical protein
2193	 52.38	0	2452671..2453426	-	251	30063767	vacJ	S2559	-	lipoprotein precursor
2194	 48.78	0	2453831..2454652	+	273	30063768	yfdC	S2560	-	putative transport protein
2195	 44.88	-1	2456297..2456599	-	100	30063769	-	S2565	-	IS911 orfA
2196	 56.27	+1	2456580..2457185	-	201	30063770	-	S2566	-	IS4 orf
2197	 51.12	0	2457501..2458934	+	477	30063771	-	S2470	-	hypothetical protein
2198	 51.65	0	2458942..2460000	-	352	30063772	-	S2568	-	sucrose specific repressor
2199	 50.56	0	2460404..2461732	+	442	30063773	dsdA	S2570	-	D-serine dehydratase
2200	 41.78	-2	2461840..2463378	-	512	30063774	emrY	S2571	-	multidrug resistance protein Y
2201	 41.49	-2	2463378..2464541	-	387	30063775	emrK	S2572	-	multidrug resistance protein K
2202	 40.65	-2	2464957..2465571	+	204	30063776	evgA	S2573	-	DNA-binding transcriptional activator EvgA
2203	 40.73	-2	2465576..2469169	+	1197	30063777	evgS	S2574	-	hybrid sensory histidine kinase in two-component regulatory system with EvgA
2204	 44.98	-1	2469225..2470409	-	394	161486456	yfdE	S2575	-	hypothetical protein
2205	 46.49	-1	2471457..2473151	-	564	30063779	-	S2577	-	putative oxalyl-CoA decarboxylase
2206	 47.08	-1	2473205..2474455	-	416	30063780	-	S2578	-	formyl-coenzyme A transferase
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.