IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2051	 53.06	0	2281226..2282416	-	396	30063625	bcr	S2398	-	bicyclomycin/multidrug efflux system
2052	 53.30	0	2282444..2283139	-	231	30063626	rsuA	S2399	-	16S rRNA pseudouridylate synthase A
2053	 53.15	0	2283289..2285049	+	586	30063627	yejH	S2400	-	putative ATP-dependent helicase
2054	 49.82	0	2285174..2285458	+	94	30063628	rplY	S2401	-	50S ribosomal protein L25
2055	 52.18	0	2285597..2286604	-	335	30063629	yejK	S2402	-	nucleoid-associated protein NdpA
2056	 49.56	0	2286786..2287013	+	75	30063630	yejL	S2403	-	hypothetical protein
2057	 52.19	0	2287033..2288793	+	586	30063631	yejM	S2404	-	putative sulfatase
2058	 48.67	0	2289047..2291557	-	836	30063632	yejO	S2406	-	putative ATP-binding component of a transport system
2059	 52.31	0	2291958..2292605	+	215	30063633	narP	S2407	-	transcriptional regulator NarP
2060	 54.51	0	2292816..2293868	-	350	30063634	ccmH	S2408	-	subunit of heme lyase
2061	 54.30	0	2293865..2294422	-	185	30063635	dsbE	S2409	-	disulfide oxidoreductase
2062	 57.00	+1	2294419..2296362	-	647	30063636	ccmF	S2410	-	cytochrome c-type biogenesis protein
2063	 54.37	0	2296359..2296838	-	159	30063637	ccmE	S2411	-	cytochrome c-type biogenesis protein CcmE
2064	 56.67	+1	2296835..2297044	-	69	30063638	ccmD	S2412	-	heme exporter protein C
2065	 55.56	0	2297041..2297778	-	245	30063639	ccmC	S2413	-	heme exporter protein C
2066	 55.66	+1	2297820..2298482	-	220	30063640	ccmB	S2414	-	heme exporter protein B, cytochrome c-type biogenesis protein
2067	 55.61	0	2298479..2299102	-	207	30063641	ccmA	S2415	-	cytochrome c biogenesis protein CcmA
2068	 51.74	0	2299115..2299717	-	200	30063642	napC	S2416	-	cytochrome c-type protein NapC
2069	 55.78	+1	2299727..2300176	-	149	30063643	napB	S2417	-	diheme cytochrome c550
2070	 55.67	+1	2300173..2301036	-	287	30063644	napH	S2418	-	quinol dehydrogenase membrane component
2071	 58.91	+1	2301023..2301718	-	231	30063645	napG	S2419	-	quinol dehydrogenase periplasmic component
2072	 56.01	+1	2301725..2304211	-	828	30063646	napA	S2420	-	nitrate reductase
2073	 54.55	0	2304208..2304471	-	87	30063647	napD	S2421	-	assembly protein for periplasmic nitrate reductase
2074	 54.75	0	2304461..2304955	-	164	30063648	napF	S2422	-	ferredoxin-type protein
2075	 49.69	0	2305363..2305851	+	162	30063649	eco	S2423	-	ecotin precursor
2076	 53.28	0	2307815..2309458	-	547	30063650	yojI	S2425	-	multidrug transporter membrane component/ATP-binding component
2077	 52.23	0	2309534..2310184	-	216	30063651	alkB	S2426	-	alkylated DNA repair protein
2078	 57.09	+1	2310184..2311248	-	354	30063652	ada	S2427	-	O6-methylguanine-DNA methyltransferase; transcription activator/repressor
2079	 53.41	0	2311322..2312377	-	351	30063653	yojL	S2428	-	thiamine biosynthesis lipoprotein ApbE
2080	 50.36	0	2312489..2313610	-	373	30063654	ompC	S2429	-	outer membrane porin protein C
2081	 49.20	0	2314348..2317020	+	890	30063655	yojN	S2431	-	phosphotransfer intermediate protein in two-component regulatory system with RcsBC
2082	 47.77	0	2317037..2317687	+	216	30063656	rcsB	S2432	-	transcriptional regulator RcsB
2083	 50.91	0	2317887..2320736	-	949	30063657	rcsC	S2433	-	hybrid sensory kinase in two-component regulatory system with RcsB and YojN
2084	 52.38	0	2321011..2321787	-	258	30063658	-	S2434	-	hypothetical protein
2085	 54.42	0	2321792..2323441	-	549	30063659	-	S2435	-	hypothetical protein
2086	 54.46	0	2323442..2323957	-	171	30063660	-	S2436	-	hypothetical protein
2087	 53.59	0	2325716..2326342	-	208	30063661	-	S2438	-	IS911 orfB
2088	 44.88	-1	2326582..2326884	-	100	30063662	-	S2440	-	IS911 orfA
2089	 51.12	0	2329233..2329856	-	207	30063663	-	S2442	-	hypothetical protein
2090	 53.81	0	2331690..2334317	-	875	30063664	gyrA	S2444	-	DNA gyrase subunit A
2091	 54.36	0	2334464..2335186	+	240	30063665	ubiG	S2445	-	3-demethylubiquinone-9 3-methyltransferase
2092	 50.61	0	2338932..2339342	+	136	30063666	-	S2447	-	insertion sequence 2 OrfA protein
2093	 55.30	0	2339300..2340205	+	301	161486466	-	S2448	-	insertion element IS2 transposase InsD
2094	 53.63	0	2341076..2343361	+	761	30063668	nrdA	S2449	-	ribonucleotide-diphosphate reductase subunit alpha
2095	 50.75	0	2343595..2344725	+	376	161486465	nrdB	S2450	-	ribonucleotide-diphosphate reductase subunit beta
2096	 57.65	+1	2344725..2344979	+	84	30063670	yfaE	S2451	-	2Fe-2S ferredoxin YfaE
2097	 49.77	0	2345033..2345683	-	216	30063671	inaA	S2452	-	hypothetical protein
2098	 41.55	-2	2345898..2346104	+	68	30063672	yfaH	S2453	-	hypothetical protein
2099	 45.68	-1	2346146..2347222	-	358	30063673	glpQ	S2454	-	glycerophosphodiester phosphodiesterase
2100	 53.05	0	2347227..2348585	-	452	30063674	glpT	S2455	-	sn-glycerol-3-phosphate transporter
2101	 57.34	+1	2348858..2350486	+	542	30063675	glpA	S2456	-	sn-glycerol-3-phosphate dehydrogenase subunit A
2102	 55.79	+1	2350476..2351735	+	419	30063676	glpB	S2457	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
2103	 53.82	0	2351732..2352922	+	396	30063677	glpC	S2458	-	sn-glycerol-3-phosphate dehydrogenase subunit C
2104	 47.63	0	2353115..2354065	+	316	30063678	yfaD	S2459	-	hypothetical protein
2105	 55.20	0	2354106..2354576	-	156	30063679	-	S2460	-	hypothetical protein
2106	 54.11	0	2354631..2355833	-	400	30063680	-	S2461	-	competence damage-inducible protein A
2107	 53.59	0	2355920..2356462	-	180	30063681	-	S2462	-	hypothetical protein
2108	 47.93	0	2356804..2357166	+	120	30063682	yfaO	S2463	-	hypothetical protein
2109	 43.18	-2	2357205..2357783	-	192	30063683	ais	S2464	-	protein induced by aluminum
2110	 51.84	0	2358115..2359254	+	379	161486464	-	S2465	-	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
2111	 49.54	0	2359258..2360226	+	322	30063685	-	S2466	-	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase
2112	 51.32	0	2360657..2362207	+	516	30063686	ybfG	S2467	-	hypothetical protein
2113	 52.75	0	2362204..2363094	+	296	30063687	-	S2468	-	hypothetical protein
2114	 51.12	0	2363094..2364746	+	550	30063688	arnT	S2469	-	4-amino-4-deoxy-L-arabinose transferase
2115	 53.27	0	2364743..2365078	+	111	30063689	-	S2567	-	sucrose-6 phosphate hydrolase
2116	 47.80	0	2365078..2365464	+	128	161486463	-	S2471	-	hypothetical protein
2117	 56.19	+1	2365835..2367190	-	451	30063691	menE	S2473	-	O-succinylbenzoic acid--CoA ligase
2118	 59.19	+1	2367187..2368149	-	320	30063692	menC	S2474	-	O-succinylbenzoate synthase
2119	 55.13	0	2368149..2369006	-	285	30063693	menB	S2475	-	naphthoate synthase
2120	 56.13	+1	2369021..2369779	-	252	30063694	yfbB	S2476	-	acyl-CoA thioester hydrolase YfbB
2121	 57.93	+1	2369776..2371446	-	556	30063695	menD	S2477	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
2122	 53.63	0	2371535..2372830	-	431	161486462	menF	S2478	-	menaquinone-specific isochorismate synthase
2123	 51.96	0	2372909..2373214	-	101	30063697	elaB	S2479	-	hypothetical protein
2124	 47.62	0	2373269..2373730	-	153	30063698	elaA	S2480	-	hypothetical protein
2125	 50.65	0	2373795..2374712	+	305	161486461	elaC	S2481	-	ribonuclease Z
2126	 52.90	0	2375148..2375423	+	91	30063700	-	S2482	-	IS1 orfA
2127	 53.37	0	2375342..2375845	+	167	30063701	-	S2483	-	IS1 orfB
2128	 57.27	+1	2377618..2379075	-	485	161486460	nuoN	S2487	-	NADH dehydrogenase subunit N
2129	 54.97	0	2379082..2380611	-	509	30063703	nuoM	S2488	-	NADH dehydrogenase subunit M
2130	 57.00	+1	2380775..2382616	-	613	30063704	nuoL	S2489	-	NADH dehydrogenase subunit L
2131	 54.46	0	2382613..2382915	-	100	30063705	nuoK	S2490	-	NADH dehydrogenase subunit K
2132	 54.05	0	2382912..2383466	-	184	30063706	nuoJ	S2491	-	NADH dehydrogenase subunit J
2133	 53.78	0	2383478..2384020	-	180	30063707	nuoI	S2492	-	NADH dehydrogenase subunit I
2134	 54.40	0	2384035..2385012	-	325	30063708	nuoH	S2493	-	NADH dehydrogenase subunit H
2135	 56.29	+1	2385009..2387735	-	908	30063709	nuoG	S2494	-	NADH dehydrogenase subunit G
2136	 56.58	+1	2387788..2389125	-	445	30063710	nuoF	S2495	-	NADH dehydrogenase I subunit F
2137	 55.29	0	2389122..2389622	-	166	30063711	nuoE	S2496	-	NADH dehydrogenase subunit E
2138	 55.80	+1	2389625..2391427	-	600	30063712	nuoC	S2497	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
2139	 51.89	0	2391521..2392183	-	220	30063713	nuoB	S2498	-	NADH dehydrogenase subunit B
2140	 53.38	0	2392199..2392642	-	147	30063714	nuoA	S2499	-	NADH dehydrogenase subunit A
2141	 49.84	0	2393273..2394211	-	312	30063715	lrhA	S2500	-	LysR family NADH dehydrogenase transcriptional regulator
2142	 50.41	0	2395130..2396347	+	405	30063716	-	S2501	-	aminotransferase AlaT
2143	 49.67	0	2396431..2397030	+	199	30063717	-	S2502	-	hypothetical protein
2144	 52.43	0	2397089..2398921	-	610	30063718	yfbS	S2503	-	putative transport protein
2145	 56.07	+1	2399008..2399658	-	216	30063719	yfbT	S2504	-	putative phosphatase
2146	 47.27	-1	2399669..2400163	-	164	30063720	-	S2505	-	hypothetical protein
2147	 50.00	0	2400246..2400701	-	151	30063721	-	S2506	-	hypothetical protein
2148	 52.37	0	2401039..2402241	+	400	30063722	ackA	S2507	-	acetate kinase
2149	 55.48	0	2402316..2404460	+	714	30063723	pta	S2508	-	phosphate acetyltransferase
2150	 51.61	0	2404650..2406170	+	506	161486459	yfcC	S2509	-	hypothetical protein
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.