IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.60   STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1991	 56.96	+1	2211660..2212205	-	181	30063565	-	S2331	-	hypothetical protein
1992	 54.38	0	2212250..2213584	-	444	30063566	-	S2332	-	putative phage tail fiber protein
1993	 49.69	0	2213709..2214197	-	162	30063567	-	S2333	-	putative phage tail fiber assembly protein
1994	 45.95	-1	2214257..2214367	-	36	30063568	-	S2334	-	putative phage tail fiber protein
1995	 52.90	0	2214712..2214987	+	91	30063569	-	S2335	-	IS1 orfA
1996	 52.98	0	2214906..2215409	+	167	30063570	-	S2336	-	IS1 B
1997	 54.74	0	2216108..2216434	+	108	30063571	-	S2337	-	IS629 orfA
1998	 54.94	0	2216670..2217317	+	215	30063572	-	S2338	-	IS629 orfB
1999	 56.19	+1	2217368..2217682	-	104	30063573	-	S2340	-	hypothetical protein
2000	 49.07	0	2217875..2217982	+	35	30063574	-	S2341	-	hypothetical protein
2001	 56.56	+1	2217963..2218694	-	243	30063575	yehW	S2342	-	putative transport system permease protein
2002	 55.88	+1	2218699..2219625	-	308	30063576	yehX	S2343	-	putative ATP-binding component of a transport system
2003	 57.08	+1	2219618..2220775	-	385	30063577	yehY	S2344	-	putative transport system permease protein
2004	 54.68	0	2220782..2221699	-	305	30063578	yehZ	S2345	-	putative transport system permease protein
2005	 53.92	0	2221951..2224248	-	765	30063579	bglX	S2346	-	beta-D-glucoside glucohydrolase
2006	 52.27	0	2224444..2226159	+	571	30063580	dld	S2347	-	D-lactate dehydrogenase
2007	 50.64	0	2226197..2227138	-	313	161486468	pbpG	S2348	-	D-alanyl-D-alanine endopeptidase
2008	 53.57	0	2227303..2227890	-	195	30063582	yohC	S2349	-	hypothetical protein
2009	 53.50	0	2228024..2228638	+	204	30063583	yohD	S2350	-	hypothetical protein
2010	 54.32	0	2231683..2232630	-	315	30063584	yohI	S2354	-	tRNA-dihydrouridine synthase C
2011	 49.62	0	2232869..2233267	+	132	30063585	yohJ	S2355	-	hypothetical protein
2012	 53.74	0	2233264..2233959	+	231	30063586	yohK	S2356	-	hypothetical protein
2013	 54.46	0	2234089..2234973	+	294	30063587	cdd	S2357	-	cytidine deaminase
2014	 48.33	0	2235123..2235842	+	239	30063588	sanA	S2358	-	hypothetical protein
2015	 42.92	-2	2235845..2236084	+	79	30063589	-	S2359	-	hypothetical protein
2016	 51.33	0	2236278..2237516	+	412	30063590	-	S2360	-	putative oxidoreductase
2017	 50.25	0	2238759..2239769	-	336	30063591	mglC	S2362	-	beta-methylgalactoside transporter inner membrane component
2018	 45.43	-1	2239785..2241305	-	506	30063592	mglA	S2363	-	galactose/methyl galaxtoside transporter ATP-binding protein
2019	 50.95	0	2241366..2242364	-	332	30063593	mglB	S2364	-	galactose-binding transport protein; receptor for galactose taxis
2020	 52.45	0	2242644..2243684	-	346	30063594	galS	S2365	-	DNA-binding transcriptional regulator GalS
2021	 54.60	0	2243826..2244902	-	358	30063595	yeiB	S2366	-	hypothetical protein
2022	 50.97	0	2244919..2245587	-	222	30063596	folE	S2367	-	GTP cyclohydrolase I
2023	 53.06	0	2248995..2250464	-	489	30063597	lysP	S2370	-	lysine transporter
2024	 53.51	0	2250670..2251551	-	293	30063598	yeiE	S2371	-	putative DNA-binding transcriptional regulator
2025	 52.95	0	2251650..2252699	+	349	30063599	yeiH	S2372	-	hypothetical protein
2026	 51.52	0	2252773..2253630	+	285	30063600	nfo	S2373	-	endonuclease IV
2027	 51.24	0	2253633..2254721	+	362	30063601	yeiI	S2374	-	hypothetical protein
2028	 50.28	0	2254777..2256027	-	416	30063602	yeiJ	S2375	-	putative transport system permease protein
2029	 51.59	0	2256127..2257068	-	313	30063603	rihB	S2376	-	ribonucleoside hydrolase 2
2030	 43.52	-1	2257238..2257816	+	192	30063604	yeiL	S2377	-	DNA-binding transcriptional activator YeiL
2031	 51.16	0	2257964..2259214	-	416	30063605	yeiM	S2378	-	putative transport system permease protein
2032	 49.20	0	2259308..2260246	-	312	30063606	yeiN	S2379	-	hypothetical protein
2033	 46.92	-1	2260234..2261175	-	313	30063607	yeiC	S2380	-	hypothetical protein
2034	 55.97	+1	2261599..2263290	-	563	30063608	fruA	S2381	-	fructose-specific PTS system IIBC component
2035	 53.25	0	2263307..2264245	-	312	30063609	fruK	S2382	-	1-phosphofructokinase
2036	 55.53	0	2264245..2265375	-	376	30063610	fruB	S2383	-	bifunctional fructose-specific PTS IIA/HPr protein
2037	 53.01	0	2265743..2266921	+	392	30063611	yeiO	S2384	-	putative transport
2038	 52.58	0	2266915..2267418	-	167	30063612	-	S2385	-	IS1 orfB
2039	 52.54	0	2267337..2267612	-	91	30063613	-	S2386	-	IS1 orfA
2040	 50.09	0	2268106..2268678	+	190	161486467	yeiP	S2387	-	elongation factor P
2041	 51.26	0	2268901..2270367	+	488	30063615	yeiQ	S2388	-	putative oxidoreductase
2042	 54.51	0	2270485..2271471	+	328	30063616	yeiR	S2389	-	hypothetical protein
2043	 43.84	-1	2271510..2272223	+	237	30063617	-	S2390	-	hypothetical protein
2044	 46.74	-1	2272635..2273201	+	188	30063618	spr	S2391	-	putative outer membrane lipoprotein
2045	 50.10	0	2273382..2274938	+	518	30063619	rtn	S2392	-	hypothetical protein
2046	 50.63	0	2275020..2276834	+	604	30063620	yejA	S2393	-	hypothetical protein
2047	 50.96	0	2276835..2277929	+	364	30063621	yejB	S2394	-	putative transport system permease protein
2048	 52.73	0	2277929..2278954	+	341	30063622	yejE	S2395	-	putative transport system permease protein
2049	 51.76	0	2278956..2280545	+	529	30063623	yejF	S2396	-	putative ATP-binding component of a transport system
2050	 48.41	0	2280549..2280893	-	114	30063624	yejG	S2397	-	hypothetical protein
2051	 53.06	0	2281226..2282416	-	396	30063625	bcr	S2398	-	bicyclomycin/multidrug efflux system
2052	 53.30	0	2282444..2283139	-	231	30063626	rsuA	S2399	-	16S rRNA pseudouridylate synthase A
2053	 53.15	0	2283289..2285049	+	586	30063627	yejH	S2400	-	putative ATP-dependent helicase
2054	 49.82	0	2285174..2285458	+	94	30063628	rplY	S2401	-	50S ribosomal protein L25
2055	 52.18	0	2285597..2286604	-	335	30063629	yejK	S2402	-	nucleoid-associated protein NdpA
2056	 49.56	0	2286786..2287013	+	75	30063630	yejL	S2403	-	hypothetical protein
2057	 52.19	0	2287033..2288793	+	586	30063631	yejM	S2404	-	putative sulfatase
2058	 48.67	0	2289047..2291557	-	836	30063632	yejO	S2406	-	putative ATP-binding component of a transport system
2059	 52.31	0	2291958..2292605	+	215	30063633	narP	S2407	-	transcriptional regulator NarP
2060	 54.51	0	2292816..2293868	-	350	30063634	ccmH	S2408	-	subunit of heme lyase
2061	 54.30	0	2293865..2294422	-	185	30063635	dsbE	S2409	-	disulfide oxidoreductase
2062	 57.00	+1	2294419..2296362	-	647	30063636	ccmF	S2410	-	cytochrome c-type biogenesis protein
2063	 54.37	0	2296359..2296838	-	159	30063637	ccmE	S2411	-	cytochrome c-type biogenesis protein CcmE
2064	 56.67	+1	2296835..2297044	-	69	30063638	ccmD	S2412	-	heme exporter protein C
2065	 55.56	0	2297041..2297778	-	245	30063639	ccmC	S2413	-	heme exporter protein C
2066	 55.66	+1	2297820..2298482	-	220	30063640	ccmB	S2414	-	heme exporter protein B, cytochrome c-type biogenesis protein
2067	 55.61	0	2298479..2299102	-	207	30063641	ccmA	S2415	-	cytochrome c biogenesis protein CcmA
2068	 51.74	0	2299115..2299717	-	200	30063642	napC	S2416	-	cytochrome c-type protein NapC
2069	 55.78	+1	2299727..2300176	-	149	30063643	napB	S2417	-	diheme cytochrome c550
2070	 55.67	+1	2300173..2301036	-	287	30063644	napH	S2418	-	quinol dehydrogenase membrane component
2071	 58.91	+1	2301023..2301718	-	231	30063645	napG	S2419	-	quinol dehydrogenase periplasmic component
2072	 56.01	+1	2301725..2304211	-	828	30063646	napA	S2420	-	nitrate reductase
2073	 54.55	0	2304208..2304471	-	87	30063647	napD	S2421	-	assembly protein for periplasmic nitrate reductase
2074	 54.75	0	2304461..2304955	-	164	30063648	napF	S2422	-	ferredoxin-type protein
2075	 49.69	0	2305363..2305851	+	162	30063649	eco	S2423	-	ecotin precursor
2076	 53.28	0	2307815..2309458	-	547	30063650	yojI	S2425	-	multidrug transporter membrane component/ATP-binding component
2077	 52.23	0	2309534..2310184	-	216	30063651	alkB	S2426	-	alkylated DNA repair protein
2078	 57.09	+1	2310184..2311248	-	354	30063652	ada	S2427	-	O6-methylguanine-DNA methyltransferase; transcription activator/repressor
2079	 53.41	0	2311322..2312377	-	351	30063653	yojL	S2428	-	thiamine biosynthesis lipoprotein ApbE
2080	 50.36	0	2312489..2313610	-	373	30063654	ompC	S2429	-	outer membrane porin protein C
2081	 49.20	0	2314348..2317020	+	890	30063655	yojN	S2431	-	phosphotransfer intermediate protein in two-component regulatory system with RcsBC
2082	 47.77	0	2317037..2317687	+	216	30063656	rcsB	S2432	-	transcriptional regulator RcsB
2083	 50.91	0	2317887..2320736	-	949	30063657	rcsC	S2433	-	hybrid sensory kinase in two-component regulatory system with RcsB and YojN
2084	 52.38	0	2321011..2321787	-	258	30063658	-	S2434	-	hypothetical protein
2085	 54.42	0	2321792..2323441	-	549	30063659	-	S2435	-	hypothetical protein
2086	 54.46	0	2323442..2323957	-	171	30063660	-	S2436	-	hypothetical protein
2087	 53.59	0	2325716..2326342	-	208	30063661	-	S2438	-	IS911 orfB
2088	 44.88	-1	2326582..2326884	-	100	30063662	-	S2440	-	IS911 orfA
2089	 51.12	0	2329233..2329856	-	207	30063663	-	S2442	-	hypothetical protein
2090	 53.81	0	2331690..2334317	-	875	30063664	gyrA	S2444	-	DNA gyrase subunit A
51.60	MEAN

4.04	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.