IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1954	 49.44	0	2157738..2158637	+	299	30063528	-	S2274	-	lipid kinase
1955	 46.54	-1	2158719..2159498	-	259	30063529	gatR	S2275	-	galactitol utilization operon repressor
1956	 48.32	0	2159598..2160638	-	346	30063530	gatD	S2277	-	galactitol-1-phosphate dehydrogenase
1957	 52.78	0	2160671..2161174	-	167	30063531	-	S2278	-	IS1 orfB
1958	 52.90	0	2161093..2161368	-	91	30063532	-	S2279	-	IS1 orfA
1959	 51.25	0	2161463..2162818	-	451	30063533	gatC	S2280	-	PTS system galactitol-specific enzyme IIC
1960	 42.81	-2	2162822..2163106	-	94	30063534	gatB	S2281	-	galactitol-specific PTS system component IIB
1961	 42.16	-2	2163137..2163589	-	150	30063535	gatA	S2282	-	galactitol-specific PTS system component IIA
1962	 48.69	0	2163599..2164861	-	420	30063536	gatZ	S2283	-	putative tagatose 6-phosphate kinase 1
1963	 52.98	0	2164890..2165744	-	284	30063537	gatY	S2284	-	tagatose-bisphosphate aldolase
1964	 51.38	0	2166052..2167104	-	350	30063538	-	S2285	-	fructose-bisphosphate aldolase
1965	 56.00	+1	2168144..2169109	+	321	30063539	-	S2287	-	putative kinase
1966	 51.14	0	2169083..2169829	-	248	30063540	yegW	S2288	-	putative transcriptional regulator
1967	 47.93	0	2169877..2170698	-	273	30063541	yegX	S2289	-	hypothetical protein
1968	 55.18	0	2170763..2171563	-	266	30063542	thiD	S2290	-	phosphomethylpyrimidine kinase
1969	 54.12	0	2171560..2172348	-	262	30063543	thiM	S2291	-	hydroxyethylthiazole kinase
1970	 47.99	0	2172571..2172843	-	90	30063544	yohL	S2292	-	hypothetical protein
1971	 45.55	-1	2175483..2177963	-	826	30063545	yehB	S2296	-	putative outer membrane protein
1972	 40.57	-2	2178734..2179258	-	174	30063546	yehD	S2298	-	putative fimbrial-like protein
1973	 52.78	0	2179534..2180037	-	167	30063547	-	S2299	-	IS1 orfB
1974	 52.54	0	2179956..2180231	-	91	30063548	-	S2300	-	IS1 orfA
1975	 43.97	-1	2180328..2180609	-	93	30063549	yehE	S2301	-	hypothetical protein
1976	 54.32	0	2180871..2181980	-	369	30063550	mrp	S2302	-	putative ATPase
1977	 52.90	0	2182112..2184145	+	677	30063551	metG	S2303	-	methionyl-tRNA synthetase
1978	 52.73	0	2194722..2195876	+	384	30063552	yehL	S2313	-	hypothetical protein
1979	 55.13	0	2195887..2198166	+	759	30063553	yehM	S2314	-	hypothetical protein
1980	 53.56	0	2198159..2199295	+	378	30063554	yehP	S2315	-	hypothetical protein
1981	 54.39	0	2199292..2201295	+	667	30063555	yehQ	S2316	-	hypothetical protein
1982	 52.78	0	2201408..2201911	-	167	30063556	-	S2317	-	IS1 orfB
1983	 52.90	0	2201830..2202105	-	91	30063557	-	S2318	-	IS1 orfA
1984	 42.64	-2	2202196..2202657	+	153	30063558	yehR	S2319	-	hypothetical protein
1985	 52.78	0	2202878..2203381	-	167	30063559	-	S2321	-	IS1 orfB
1986	 52.54	0	2203300..2203575	-	91	30063560	-	S2322	-	IS1 orfA
1987	 49.03	0	2203991..2204710	-	239	30063561	yehT	S2324	-	putative two-component response-regulatory protein YehT
1988	 50.77	0	2204707..2206392	-	561	30063562	yehU	S2325	-	putative 2-component sensor protein
1989	 43.78	-1	2208343..2208591	+	82	30063563	-	S2328	-	DNA-damage-inducible protein
1990	 49.63	0	2208707..2208976	-	89	30063564	-	S2329	-	hypothetical protein
1991	 56.96	+1	2211660..2212205	-	181	30063565	-	S2331	-	hypothetical protein
1992	 54.38	0	2212250..2213584	-	444	30063566	-	S2332	-	putative phage tail fiber protein
1993	 49.69	0	2213709..2214197	-	162	30063567	-	S2333	-	putative phage tail fiber assembly protein
1994	 45.95	-1	2214257..2214367	-	36	30063568	-	S2334	-	putative phage tail fiber protein
1995	 52.90	0	2214712..2214987	+	91	30063569	-	S2335	-	IS1 orfA
1996	 52.98	0	2214906..2215409	+	167	30063570	-	S2336	-	IS1 B
1997	 54.74	0	2216108..2216434	+	108	30063571	-	S2337	-	IS629 orfA
1998	 54.94	0	2216670..2217317	+	215	30063572	-	S2338	-	IS629 orfB
1999	 56.19	+1	2217368..2217682	-	104	30063573	-	S2340	-	hypothetical protein
2000	 49.07	0	2217875..2217982	+	35	30063574	-	S2341	-	hypothetical protein
2001	 56.56	+1	2217963..2218694	-	243	30063575	yehW	S2342	-	putative transport system permease protein
2002	 55.88	+1	2218699..2219625	-	308	30063576	yehX	S2343	-	putative ATP-binding component of a transport system
2003	 57.08	+1	2219618..2220775	-	385	30063577	yehY	S2344	-	putative transport system permease protein
2004	 54.68	0	2220782..2221699	-	305	30063578	yehZ	S2345	-	putative transport system permease protein
2005	 53.92	0	2221951..2224248	-	765	30063579	bglX	S2346	-	beta-D-glucoside glucohydrolase
2006	 52.27	0	2224444..2226159	+	571	30063580	dld	S2347	-	D-lactate dehydrogenase
2007	 50.64	0	2226197..2227138	-	313	161486468	pbpG	S2348	-	D-alanyl-D-alanine endopeptidase
2008	 53.57	0	2227303..2227890	-	195	30063582	yohC	S2349	-	hypothetical protein
2009	 53.50	0	2228024..2228638	+	204	30063583	yohD	S2350	-	hypothetical protein
2010	 54.32	0	2231683..2232630	-	315	30063584	yohI	S2354	-	tRNA-dihydrouridine synthase C
2011	 49.62	0	2232869..2233267	+	132	30063585	yohJ	S2355	-	hypothetical protein
2012	 53.74	0	2233264..2233959	+	231	30063586	yohK	S2356	-	hypothetical protein
2013	 54.46	0	2234089..2234973	+	294	30063587	cdd	S2357	-	cytidine deaminase
2014	 48.33	0	2235123..2235842	+	239	30063588	sanA	S2358	-	hypothetical protein
2015	 42.92	-2	2235845..2236084	+	79	30063589	-	S2359	-	hypothetical protein
2016	 51.33	0	2236278..2237516	+	412	30063590	-	S2360	-	putative oxidoreductase
2017	 50.25	0	2238759..2239769	-	336	30063591	mglC	S2362	-	beta-methylgalactoside transporter inner membrane component
2018	 45.43	-1	2239785..2241305	-	506	30063592	mglA	S2363	-	galactose/methyl galaxtoside transporter ATP-binding protein
2019	 50.95	0	2241366..2242364	-	332	30063593	mglB	S2364	-	galactose-binding transport protein; receptor for galactose taxis
2020	 52.45	0	2242644..2243684	-	346	30063594	galS	S2365	-	DNA-binding transcriptional regulator GalS
2021	 54.60	0	2243826..2244902	-	358	30063595	yeiB	S2366	-	hypothetical protein
2022	 50.97	0	2244919..2245587	-	222	30063596	folE	S2367	-	GTP cyclohydrolase I
2023	 53.06	0	2248995..2250464	-	489	30063597	lysP	S2370	-	lysine transporter
2024	 53.51	0	2250670..2251551	-	293	30063598	yeiE	S2371	-	putative DNA-binding transcriptional regulator
2025	 52.95	0	2251650..2252699	+	349	30063599	yeiH	S2372	-	hypothetical protein
2026	 51.52	0	2252773..2253630	+	285	30063600	nfo	S2373	-	endonuclease IV
2027	 51.24	0	2253633..2254721	+	362	30063601	yeiI	S2374	-	hypothetical protein
2028	 50.28	0	2254777..2256027	-	416	30063602	yeiJ	S2375	-	putative transport system permease protein
2029	 51.59	0	2256127..2257068	-	313	30063603	rihB	S2376	-	ribonucleoside hydrolase 2
2030	 43.52	-1	2257238..2257816	+	192	30063604	yeiL	S2377	-	DNA-binding transcriptional activator YeiL
2031	 51.16	0	2257964..2259214	-	416	30063605	yeiM	S2378	-	putative transport system permease protein
2032	 49.20	0	2259308..2260246	-	312	30063606	yeiN	S2379	-	hypothetical protein
2033	 46.92	-1	2260234..2261175	-	313	30063607	yeiC	S2380	-	hypothetical protein
2034	 55.97	+1	2261599..2263290	-	563	30063608	fruA	S2381	-	fructose-specific PTS system IIBC component
2035	 53.25	0	2263307..2264245	-	312	30063609	fruK	S2382	-	1-phosphofructokinase
2036	 55.53	0	2264245..2265375	-	376	30063610	fruB	S2383	-	bifunctional fructose-specific PTS IIA/HPr protein
2037	 53.01	0	2265743..2266921	+	392	30063611	yeiO	S2384	-	putative transport
2038	 52.58	0	2266915..2267418	-	167	30063612	-	S2385	-	IS1 orfB
2039	 52.54	0	2267337..2267612	-	91	30063613	-	S2386	-	IS1 orfA
2040	 50.09	0	2268106..2268678	+	190	161486467	yeiP	S2387	-	elongation factor P
2041	 51.26	0	2268901..2270367	+	488	30063615	yeiQ	S2388	-	putative oxidoreductase
2042	 54.51	0	2270485..2271471	+	328	30063616	yeiR	S2389	-	hypothetical protein
2043	 43.84	-1	2271510..2272223	+	237	30063617	-	S2390	-	hypothetical protein
2044	 46.74	-1	2272635..2273201	+	188	30063618	spr	S2391	-	putative outer membrane lipoprotein
2045	 50.10	0	2273382..2274938	+	518	30063619	rtn	S2392	-	hypothetical protein
2046	 50.63	0	2275020..2276834	+	604	30063620	yejA	S2393	-	hypothetical protein
2047	 50.96	0	2276835..2277929	+	364	30063621	yejB	S2394	-	putative transport system permease protein
2048	 52.73	0	2277929..2278954	+	341	30063622	yejE	S2395	-	putative transport system permease protein
2049	 51.76	0	2278956..2280545	+	529	30063623	yejF	S2396	-	putative ATP-binding component of a transport system
2050	 48.41	0	2280549..2280893	-	114	30063624	yejG	S2397	-	hypothetical protein
2051	 53.06	0	2281226..2282416	-	396	30063625	bcr	S2398	-	bicyclomycin/multidrug efflux system
2052	 53.30	0	2282444..2283139	-	231	30063626	rsuA	S2399	-	16S rRNA pseudouridylate synthase A
2053	 53.15	0	2283289..2285049	+	586	30063627	yejH	S2400	-	putative ATP-dependent helicase
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.