IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1845	 53.77	0	2030527..2032023	-	498	30063419	-	S2128	-	putative sheath protein
1846	 50.59	0	2032191..2032445	-	84	30063420	-	S2129	-	hypothetical protein
1847	 52.38	0	2032575..2033288	-	237	30063421	-	S2130	-	IS600 orfB
1848	 46.20	-1	2033429..2033731	-	100	30063422	-	S2131	-	IS600 orfA
1849	 54.70	0	2034606..2034956	-	116	30063423	-	S2133	-	ISSfl3 orfB
1850	 51.81	0	2034953..2035450	-	165	30063424	-	S2134	-	ISSfl3 orfA
1851	 46.20	-1	2036742..2037425	-	227	30063425	-	S2139	-	putative Q antiterminator of prophage
1852	 52.19	0	2037422..2037787	-	121	30063426	-	S2140	-	putative crossover junction endodeoxyribonuclease
1853	 53.09	0	2037788..2038774	-	328	30063427	-	S2142	-	hypothetical protein
1854	 54.37	0	2038773..2039252	+	159	30063428	-	S2141	-	hypothetical protein
1855	 51.17	0	2039294..2039506	-	70	30063429	-	S2143	-	putative cell killing protein of prophage
1856	 47.32	-1	2040101..2040436	-	111	30063430	-	S2144	-	hypothetical protein
1857	 47.15	-1	2040562..2040684	+	40	30063431	-	S2145	-	hypothetical protein
1858	 43.97	-1	2040864..2041709	+	281	30063432	-	S2146	-	putative integrase for prophage CP-933U
1859	 45.16	-1	2041906..2042742	+	278	30063433	-	S2148	-	hypothetical protein
1860	 52.93	0	2043593..2044342	+	249	30063434	-	S2152	-	putative integrase
1861	 46.75	-1	2045315..2045545	-	76	30063435	-	S2155	-	IS911 orfA
1862	 46.20	-1	2046243..2046545	+	100	30063436	-	S2157	-	IS600 orfA
1863	 52.24	0	2046686..2047399	+	237	30063437	-	S2158	-	IS600 orfB
1864	 49.48	0	2047751..2049205	+	484	30063438	amn	S2160	-	AMP nucleosidase
1865	 39.61	-2	2049548..2050264	+	238	30063439	-	S2161	-	hypothetical protein
1866	 47.42	-1	2052641..2053591	-	316	30063440	cbl	S2165	-	transcriptional regulator Cbl
1867	 48.37	0	2053693..2054610	-	305	30063441	nac	S2166	-	nitrogen assimilation transcriptional regulator
1868	 49.04	0	2055069..2056004	-	311	30063442	erfK	S2168	-	hypothetical protein
1869	 51.20	0	2056066..2057145	-	359	30063443	cobT	S2169	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1870	 53.36	0	2057157..2057900	-	247	30063444	cobS	S2170	-	cobalamin synthase
1871	 52.38	0	2058418..2059131	-	237	30063445	-	S2172	-	IS600 orfB
1872	 46.20	-1	2059272..2059574	-	100	30063446	-	S2173	-	IS600 orfA
1873	 54.74	0	2059817..2060143	+	108	30063447	is629a	S2175	-	IS629 orfA
1874	 54.78	0	2060379..2061026	+	215	30063448	is629b	S2176	-	IS629 orfB
1875	 46.46	-1	2061887..2062282	-	131	30063449	yeeX	S2177	-	hypothetical protein
1876	 50.22	0	2062757..2063431	+	224	30063450	-	S2179	-	ISSfl3 orfA
1877	 52.58	0	2063428..2063640	+	70	30063451	-	S2180	-	ISSfl3 orfB
1878	 53.18	0	2063643..2064161	-	172	30063452	-	S2181	-	IS629 orfA
1879	 55.37	0	2064173..2064526	-	117	30063453	-	S2182	-	IS629 orfB
1880	 52.37	0	2065084..2066685	+	533	30063454	-	S2184	-	ISSfl3 orfC
1881	 45.40	-1	2066754..2067068	+	104	30063455	-	S2185	-	hypothetical protein
1882	 49.40	0	2067528..2067776	-	82	30063456	-	S2187	-	ISSfl3 orfD
1883	 50.79	0	2068553..2069125	-	190	30063457	-	S2189	-	ISSfl3 orfC
1884	 54.99	0	2069122..2069472	-	116	30063458	-	S2190	-	ISSfl3 orfB
1885	 51.81	0	2069469..2069966	-	165	30063459	-	S2191	-	ISSfl3 orfA
1886	 50.11	0	2071243..2072667	+	474	30063460	sbcB	S2193	-	exonuclease I
1887	 51.32	0	2072710..2072937	-	75	30063461	yeeD	S2194	-	hypothetical protein
1888	 50.71	0	2072951..2074009	-	352	30063462	yeeE	S2195	-	putative transport system permease protein
1889	 52.91	0	2074188..2075546	-	452	30063463	yeeF	S2196	-	putative amino acid/amine transport protein
1890	 49.90	0	2075759..2076742	-	327	30063464	yeeY	S2197	-	putative LYSR-type transcriptional regulator
1891	 51.15	0	2076788..2077612	-	274	30063465	-	S2198	-	putative enzyme of sugar metabolism
1892	 52.04	0	2077971..2078264	-	97	30063466	-	S2199	-	IS1 orfB
1893	 52.54	0	2078392..2078667	-	91	30063467	-	S2200	-	IS1 orfA
1894	 47.62	0	2078701..2078973	-	90	30063468	yefM	S2201	-	antitoxin YefM
1895	 54.56	0	2079443..2080342	+	299	30063469	hisG	S2202	-	ATP phosphoribosyltransferase
1896	 57.78	+1	2080348..2081652	+	434	30063470	hisD	S2203	-	histidinol dehydrogenase
1897	 54.81	0	2081649..2082719	+	356	30063471	hisC	S2204	-	histidinol-phosphate aminotransferase
1898	 53.18	0	2082719..2083786	+	355	30063472	hisB	S2205	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
1899	 55.67	+1	2083786..2084376	+	196	30063473	hisH	S2206	-	imidazole glycerol phosphate synthase subunit HisH
1900	 56.23	+1	2084376..2085113	+	245	30063474	hisA	S2207	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1901	 51.99	0	2085095..2085871	+	258	30063475	hisF	S2208	-	imidazole glycerol phosphate synthase subunit HisF
1902	 52.12	0	2085865..2086476	+	203	30063476	hisI	S2209	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
1903	 45.66	-1	2086662..2087675	-	337	30063477	wzzB	S2210	-	regulator of length of O-antigen component of lipopolysaccharide chains
1904	 50.53	0	2089155..2090561	-	468	30063478	gnd	S2212	-	6-phosphogluconate dehydrogenase
1905	 33.06	-2	2090670..2091029	-	119	30063479	-	S2213	-	hypothetical protein
1906	 33.33	-2	2091026..2091577	-	183	30063480	-	S2214	-	hypothetical protein
1907	 34.00	-2	2091678..2092277	-	199	30063481	-	S2215	-	hypothetical protein
1908	 34.96	-2	2092448..2092939	-	163	30063482	-	S2216	-	hypothetical protein
1909	 36.92	-2	2092997..2093386	-	129	30063483	rfbJ	S2217	-	glycosyl transferase
1910	 30.13	-2	2093449..2093823	-	124	30063484	rfbI	S2218	-	glycosyl translocase
1911	 27.33	-2	2093827..2094975	-	382	30063485	rfc	S2219	-	O-antigen polymerase
1912	 30.46	-2	2094995..2095864	-	289	30063486	rfbG	S2220	-	dTDP-rhamnosyl transferase
1913	 32.66	-2	2095893..2096783	-	296	30063487	rfbF	S2221	-	dTDP-rhamnosyl transferase
1914	 34.37	-2	2096813..2098069	-	418	30063488	rfbE	S2222	-	polysaccharide biosynthesis protein
1915	 37.73	-2	2098085..2098630	-	181	30063489	rfbC	S2223	-	dTDP-6-deoxy-L-mannose-dehydrogenase
1916	 43.80	-1	2098634..2099512	-	292	30063490	rfbA	S2225	-	glucose-1-phosphate thymidylyltransferase
1917	 49.22	0	2099571..2100470	-	299	30063491	rfbD	S2226	-	dTDP-4-dehydrorhamnose reductase
1918	 44.20	-1	2100470..2101555	-	361	30063492	rfbB	S2227	-	dTDP-glucose 4,6 dehydratase
1919	 51.57	0	2101928..2102821	-	297	30063493	galF	S2228	-	UTP--glucose-1-phosphate uridylyltransferase subunit GalF
1920	 47.96	0	2102996..2104390	-	464	30063494	wcaM	S2229	-	putative colanic acid biosynthesis protein
1921	 54.22	0	2104401..2105621	-	406	30063495	wcaL	S2230	-	putative colanic acid biosynthesis glycosyl transferase
1922	 54.25	0	2105618..2106898	-	426	30063496	wcaK	S2231	-	putative pyruvyl transferase
1923	 53.96	0	2107078..2108556	-	492	30063497	wzxC	S2232	-	colanic acid exporter
1924	 53.91	0	2108558..2109952	-	464	30063498	wcaJ	S2233	-	putative UDP-glucose lipid carrier transferase
1925	 55.07	0	2110007..2111377	-	456	30063499	cpsG	S2234	-	phosphomannomutase
1926	 55.25	0	2111570..2113006	-	478	30063500	cpsB	S2235	-	mannose-1-phosphate guanyltransferase
1927	 55.23	0	2113009..2114232	-	407	30063501	wcaI	S2236	-	glycosyl transferase
1928	 55.42	0	2114229..2114708	-	159	30063502	wcaH	S2237	-	GDP-mannose mannosyl hydrolase
1929	 55.83	+1	2114708..2115676	-	322	30063503	wcaG	S2238	-	putative nucleotide di-P-sugar epimerase or dehydratase
1930	 54.28	0	2115679..2116800	-	373	30063504	gmd	S2239	-	GDP-D-mannose dehydratase
1931	 47.72	0	2116826..2117374	-	182	30063505	wcaF	S2240	-	putative colanic acid biosynthesis acetyltransferase WcaF
1932	 52.90	0	2117570..2117845	+	91	30063506	-	S2242	-	IS1 orfA
1933	 52.98	0	2117764..2118267	+	167	30063507	-	S2243	-	IS1 orfB
1934	 55.01	0	2120292..2120780	-	162	30063508	wcaB	S2246	-	putative colanic acid biosynthesis acetyltransferase WcaB
1935	 53.03	0	2121715..2123877	-	720	161486469	-	S2248	-	tyrosine kinase
1936	 53.83	0	2123880..2124323	-	147	30063510	wzb	S2249	-	tyrosine phosphatase
1937	 53.25	0	2124329..2125468	-	379	30063511	wza	S2250	-	putative polysaccharide export protein
1938	 53.03	0	2126127..2127710	+	527	30063512	yegH	S2251	-	putative transport protein
1939	 52.54	0	2128159..2130012	-	617	30063513	asmA	S2252	-	putative assembly protein
1940	 59.97	+2	2130034..2130615	-	193	30063514	dcd	S2253	-	deoxycytidine triphosphate deaminase
1941	 48.75	0	2130707..2131348	-	213	30063515	udk	S2254	-	uridine kinase
1942	 57.89	+1	2132110..2133306	-	398	30063516	-	S2256	-	ISSfl4 orf
1943	 55.95	+1	2136535..2137383	-	282	30063517	alkA	S2258	-	3-methyl-adenine DNA glycosylase II
1944	 51.44	0	2140818..2141579	-	253	30063518	-	S2261	-	hypothetical protein
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.