IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
139	 56.14	+1	161047..161844	+	265	30061711	fhuC	S0146	-	iron-hydroxamate transporter ATP-binding subunit
140	 54.21	0	161844..162734	+	296	30061712	fhuD	S0147	-	iron-hydroxamate transporter substrate-binding subunit
141	 59.46	+1	162731..164713	+	660	30061713	fhuB	S0148	-	iron-hydroxamate transporter permease subunit
142	 55.74	+1	164748..166028	-	426	30061714	hemL	S0149	-	glutamate-1-semialdehyde aminotransferase
143	 53.80	0	166253..167674	+	473	30061715	yadQ	S0150	-	chloride channel protein
144	 51.59	0	167756..168100	+	114	30061716	yadR	S0151	-	iron-sulfur cluster insertion protein ErpA
145	 53.04	0	168147..168770	-	207	30061717	yadS	S0152	-	hypothetical protein
146	 52.68	0	168808..169608	-	266	30061718	yadT	S0153	-	vitamin B12-transporter protein BtuF
147	 52.93	0	169601..170299	-	232	30061719	pfs	S0154	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
148	 47.89	0	170383..171900	+	505	30061720	dgt	S0155	-	deoxyguanosinetriphosphate triphosphohydrolase
149	 53.96	0	172030..173454	+	474	30061721	htrA	S0156	-	serine endoprotease
150	 44.19	-1	174854..175240	-	128	30061722	yaeH	S0158	-	hypothetical protein
151	 52.85	0	175554..176378	-	274	30061723	dapD	S0159	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
152	 53.42	0	176409..179081	-	890	30061724	glnD	S0160	-	PII uridylyl-transferase
153	 50.57	0	179143..179937	-	264	30061725	map	S0161	-	methionine aminopeptidase
154	 51.10	0	180305..181030	+	241	30061726	rpsB	S0162	-	30S ribosomal protein S2
155	 49.65	0	181288..182139	+	283	30061727	tsf	S0163	-	elongation factor Ts
156	 52.62	0	182286..183011	+	241	30061728	pyrH	S0164	-	uridylate kinase
157	 50.90	0	183303..183860	+	185	30061729	frr	S0165	-	ribosome recycling factor
158	 52.46	0	183952..185148	+	398	30061730	yaeM	S0166	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
159	 49.34	0	185334..186095	+	253	30061731	yaeS	S0167	-	undecaprenyl pyrophosphate synthase
160	 50.58	0	186108..186965	+	285	161486544	cdsA	S0168	-	CDP-diglyceride synthase
161	 50.85	0	186977..188329	+	450	30061733	yaeL	S0169	-	zinc metallopeptidase
162	 50.31	0	188359..190791	+	810	30061734	yaeT	S0170	-	outer membrane protein assembly factor YaeT
163	 49.59	0	190913..191398	+	161	30061735	hlpA	S0171	-	periplasmic chaperone
164	 53.02	0	191402..192427	+	341	30061736	lpxD	S0172	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
165	 50.44	0	192532..192987	+	151	30061737	fabZ	S0173	-	(3R)-hydroxymyristoyl-ACP dehydratase
166	 52.47	0	192991..193779	+	262	30061738	lpxA	S0174	-	UDP-N-acetylglucosamine acyltransferase
167	 53.96	0	193779..194927	+	382	30061739	lpxB	S0175	-	lipid-A-disaccharide synthase
168	 55.95	+1	194924..195520	+	198	30061740	rnhB	S0176	-	ribonuclease HII
169	 55.04	0	195557..199039	+	1160	30061741	dnaE	S0177	-	DNA polymerase III subunit alpha
170	 52.71	0	199052..200011	+	319	30061742	accA	S0178	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
171	 50.79	0	200110..202251	+	713	30061743	ldcC	S0179	-	lysine decarboxylase 2
172	 51.79	0	202308..202697	+	129	161486543	yaeR	S0180	-	hypothetical protein
173	 58.12	+1	202762..204060	+	432	30061745	tilS	S0181	-	tRNA(Ile)-lysidine synthetase
174	 46.36	-1	204109..204369	-	86	30061746	yaeO	S0182	-	Rho-binding antiterminator
175	 51.65	0	204722..205267	+	181	30061747	yaeQ	S0183	-	hypothetical protein
176	 54.14	0	205264..205686	+	140	30061748	yaeJ	S0184	-	hypothetical protein
177	 51.34	0	205700..206410	+	236	30061749	cutF	S0185	-	lipoprotein involved with copper homeostasis and adhesion
178	 48.73	0	206565..207389	-	274	30061750	yaeF	S0186	-	hypothetical protein
179	 54.45	0	207442..209160	-	572	30061751	proS	S0187	-	prolyl-tRNA synthetase
180	 54.94	0	209271..209978	-	235	30061752	yaeB	S0188	-	hypothetical protein
181	 53.33	0	209975..210379	-	134	30061753	rcsF	S0189	-	outer membrane lipoprotein
182	 48.53	0	210497..211312	-	271	30061754	metQ	S0190	-	DL-methionine transporter substrate-binding subunit
183	 51.68	0	211352..212005	-	217	30061755	yaeE	S0191	-	DL-methionine transporter permease subunit
184	 52.33	0	211998..213029	-	343	30061756	metN	S0192	-	DL-methionine transporter ATP-binding subunit
185	 50.17	0	213217..213792	+	191	30061757	yaeD	S0193	-	D,D-heptose 1,7-bisphosphate phosphatase
186	 45.77	-1	219551..220354	+	267	30061758	dkgB	S0200	-	2,5-diketo-D-gluconate reductase B
187	 54.18	0	220393..221721	-	442	30061759	-	S0201	-	IS4 orf
188	 49.29	0	221789..222703	-	304	30061760	yafC	S0202	-	putative transcriptional regulator LYSR-type
189	 52.81	0	222944..223744	+	266	30061761	yafD	S0203	-	hypothetical protein
190	 49.28	0	223972..224592	+	206	30061762	yafE	S0204	-	putative biotin synthesis protein
191	 51.82	0	224640..225986	-	448	30061763	dniR	S0205	-	membrane-bound lytic murein transglycosylase D
192	 39.95	-2	226058..226813	-	251	30061764	gloB	S0206	-	hydroxyacylglutathione hydrolase
193	 49.59	0	226844..227569	+	241	30061765	yafS	S0207	-	hypothetical protein
194	 50.43	0	227566..228033	-	155	30061766	rnhA	S0208	-	ribonuclease H
195	 50.27	0	228098..228829	+	243	30061767	dnaQ	S0209	-	DNA polymerase III subunit epsilon
196	 59.69	+2	229169..230215	-	348	30061768	safA	S0211	-	putative cytoplasmic protein
197	 67.54	+2	230226..230339	-	37	30061769	-	S0212	-	hypothetical protein
198	 61.76	+2	230483..230788	-	101	30061770	safB	S0213	-	periplasmic chaperone of fimbral assembly machinery
199	 59.13	+1	230785..232668	-	627	30061771	safC	S0214	-	outer membrane usher protein
200	 55.76	+1	232684..233178	-	164	30061772	-	S0215	-	putative cytoplasmic protein
201	 59.08	+1	233373..234005	-	210	30061773	sat1	S0217	-	putative cytoplasmic protein
202	 48.15	0	233992..234369	-	125	30061774	sat2	S0218	-	putative cytoplasmic protein
203	 45.00	-1	234607..234906	-	99	30061775	-	S0219	-	putative cytoplasmic protein
204	 50.36	0	234959..235369	+	136	30061776	-	S0220	-	insertion sequence 2 OrfA protein
205	 55.41	0	235327..236232	+	301	30061777	-	S0221	-	insertion element IS2 transposase InsD
206	 45.21	-1	236654..236956	+	100	30061778	-	S0223	-	IS911 orfA
207	 54.29	0	236983..237822	+	279	30061779	-	S0224	-	IS911 orfB
208	 50.37	0	238511..238780	-	89	30061781	-	S0229	-	putative endolysin R of prophage CP-933V
209	 46.98	-1	239101..239415	-	104	30061782	-	S0230	-	hypothetical protein
210	 50.00	0	239420..239635	-	71	30061783	-	S0231	-	lysis protein S
211	 46.13	-1	239992..240366	+	124	30061784	-	S0232	-	hypothetical protein
212	 47.30	-1	240390..240797	-	135	30061785	-	S0233	-	hypothetical protein
213	 52.80	0	240794..241846	-	350	30061786	-	S0235	-	IS911 orfA
214	 54.52	0	240794..241633	-	279	30061787	-	S0234	-	IS911 orfB
215	 51.87	0	242170..242730	+	186	30061788	-	S0236	-	putative terminase large subunit
216	 50.93	0	242699..243073	+	124	30061789	-	S0237	-	putative terminase large subunit
217	 51.15	0	243074..245239	+	721	30061790	-	S0238	-	putative packaging glycoprotein
218	 53.40	0	245253..246164	+	303	30061791	-	S0239	-	putative scaffolding protein
219	 51.85	0	246164..247459	+	431	30061792	-	S0240	-	putative coat protein
220	 47.62	0	247504..247734	+	76	30061793	-	S0241	-	hypothetical protein
221	 48.50	0	247712..248212	+	166	30061794	-	S0242	-	putative DNA stabilization protein
222	 50.74	0	248212..249630	+	472	30061795	-	S0243	-	putative packaged DNA stabilization protein
223	 50.65	0	249630..250478	+	282	30061796	-	S0244	-	putative packaged DNA stabilization protein
224	 49.12	0	250478..250933	+	151	30061797	-	S0245	-	putative head assembly protein
225	 51.66	0	250936..251628	+	230	30061798	-	S0246	-	putative DNA transfer protein
226	 51.35	0	251638..252969	+	443	30061799	-	S0247	-	putative prophage DNA injection protein
227	 50.78	0	252970..254700	+	576	30061800	-	S0248	-	putative DNA transfer protein
228	 54.74	0	254826..255152	+	108	30061801	-	S0249	-	IS629 orfA
229	 54.78	0	255387..256034	+	215	30061802	-	S0250	-	IS629 orfB
230	 47.49	-1	256085..256423	-	112	30061803	psiF	S0251	-	hypothetical protein
231	 52.19	0	256524..258008	-	494	30061804	phoA	S0252	-	alkaline phosphatase
232	 45.59	-1	258040..258300	-	86	30061805	yaiB	S0253	-	hypothetical protein
233	 51.32	0	258763..259857	+	364	30061806	ddl	S0254	-	D-alanyl-alanine synthetase A
234	 44.35	-1	259881..260225	-	114	30061807	-	S0255	-	hypothetical protein
235	 52.75	0	260353..260661	+	102	30061808	-	S0256	-	hypothetical protein
236	 53.24	0	260720..261814	-	364	30061809	yaiW	S0257	-	hypothetical protein
237	 51.02	0	261827..263047	-	406	30061810	sbmA	S0258	-	transport protein
238	 54.75	0	263399..264556	+	385	30061811	yaiH	S0259	-	beta-lactamase/D-alanine carboxypeptidase
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.