IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1792	 52.24	0	1976674..1978080	+	468	30063366	fliD	S2063	-	flagellar capping protein
1793	 48.18	0	1978105..1978515	+	136	30063367	fliS	S2064	-	flagellar protein FliS
1794	 51.91	0	1978515..1978880	+	121	30063368	fliT	S2065	-	flagellar biosynthesis protein FliT
1795	 49.80	0	1978958..1980445	+	495	30063369	amyA	S2066	-	cytoplasmic alpha-amylase
1796	 57.00	+1	1980479..1980892	-	137	30063370	yedD	S2067	-	hypothetical protein
1797	 54.48	0	1981079..1982284	+	401	30063371	yedE	S2068	-	putative inner membrane protein
1798	 48.29	0	1982281..1982514	+	77	30063372	yedF	S2069	-	hypothetical protein
1799	 52.17	0	1983331..1984137	-	268	30063373	-	S2072	-	putative virulence protein
1800	 44.14	-1	1985546..1986628	+	360	30063374	nmpC	S2073	-	putative outer membrane porin protein C precurser
1801	 37.13	-2	1987178..1987915	-	245	30063375	-	S4819	-	putative regulator
1802	 42.39	-2	1987925..1988476	-	183	30063376	ybcL	S4820	-	putative kinase inhibitor
1803	 43.24	-2	1988645..1988977	-	110	30063377	emrE	S4821	-	multidrug efflux protein
1804	 54.92	0	1989322..1989636	-	104	30063378	fliE	S2076	-	flagellar hook-basal body protein FliE
1805	 56.22	+1	1991502..1992497	+	331	30063379	fliG	S2078	-	flagellar motor switch protein G
1806	 57.21	+1	1992490..1993176	+	228	30063380	fliH	S2079	-	flagellar assembly protein H
1807	 58.01	+1	1993176..1994549	+	457	30063381	fliI	S2080	-	flagellum-specific ATP synthase
1808	 54.43	0	1994909..1996036	+	375	30063382	fliK	S2082	-	flagellar hook-length control protein
1809	 52.90	0	1996141..1996605	+	154	30063383	fliL	S2083	-	flagellar basal body-associated protein FliL
1810	 53.03	0	1996610..1997614	+	334	30063384	fliM	S2084	-	flagellar motor switch protein FliM
1811	 55.80	+1	1997611..1998024	+	137	30063385	fliN	S2085	-	flagellar motor switch protein FliN
1812	 55.74	+1	1998027..1998392	+	121	161486472	fliO	S2086	-	flagellar biosynthesis protein FliO
1813	 51.11	0	1999167..1999436	+	89	30063387	fliQ	S2088	-	flagellar biosynthesis protein FliQ
1814	 47.20	-1	1999445..2000230	+	261	30063388	fliR	S2089	-	flagellar biosynthesis protein FliR
1815	 38.30	-2	2000515..2001138	+	207	30063389	rcsA	S2090	-	positive regulator for ctr capsule biosynthesis, positive transcription factor
1816	 50.79	0	2001182..2001370	-	62	30063390	dsrB	S2091	-	hypothetical protein
1817	 48.68	0	2001533..2001760	+	75	30063391	-	S2092	-	hypothetical protein
1818	 51.91	0	2004735..2004917	-	60	30063392	-	S2096	-	hypothetical protein
1819	 52.72	0	2004996..2005913	-	305	30063393	yedI	S2097	-	hypothetical protein
1820	 53.64	0	2006086..2007006	+	306	30063394	yedA	S2098	-	hypothetical protein
1821	 56.26	+1	2006995..2007465	-	156	30063395	vsr	S2099	-	DNA mismatch endonuclease, patch repair protein
1822	 51.87	0	2007446..2008864	-	472	30063396	dcm	S2100	-	DNA cytosine methylase
1823	 50.43	0	2009769..2010581	-	270	30063397	-	S2103	-	ISEhe3 orfB
1824	 49.10	0	2010638..2010916	-	92	30063398	-	S2104	-	ISEhe3 orfA
1825	 45.27	-1	2010943..2011830	+	295	30063399	-	S2105	-	putative outer membrane pore protein
1826	 54.86	0	2011755..2012660	-	301	161486471	-	S2106	-	insertion element IS2 transposase InsD
1827	 52.46	0	2012618..2012983	-	121	161486470	-	S2107	-	insertion sequence 2 OrfA protein
1828	 41.43	-2	2013047..2013256	+	69	30063402	-	S2108	-	putative outer membrane protein
1829	 52.90	0	2013884..2014159	+	91	30063403	-	S2109	-	IS1 orfA
1830	 53.37	0	2014078..2014581	+	167	30063404	-	S2110	-	IS1 orfB
1831	 48.11	0	2014627..2015499	+	290	30063405	yedU	S2111	-	chaperone protein HchA
1832	 39.44	-2	2015585..2016943	-	452	30063406	yedV	S2112	-	putative 2-component sensor protein
1833	 44.64	-1	2016943..2017614	-	223	30063407	yedW	S2113	-	transcriptional regulatory protein YedW
1834	 42.27	-2	2017747..2018160	+	137	30063408	-	S2114	-	hypothetical protein
1835	 47.96	0	2019274..2019909	+	211	30063409	-	S2116	-	putative sulfite oxidase subunit YedZ
1836	 38.86	-2	2020167..2020817	+	216	30063410	-	S2117	-	hypothetical protein
1837	 49.63	0	2021895..2022164	-	89	30063411	-	S2118	-	putative bacteriophage protein
1838	 47.93	0	2023205..2024848	+	547	30063412	ipaH_5	S2119	-	invasion plasmid antigen
1839	 54.76	0	2025028..2025405	-	125	30063413	-	S2121	-	hypothetical protein
1840	 52.90	0	2026462..2026737	+	91	30063414	-	S2122	-	IS1 orfA
1841	 52.98	0	2026656..2027159	+	167	30063415	-	S2123	-	IS1 orfB
1842	 52.10	0	2027802..2029751	-	649	30063416	-	S2124	-	putative tail protein
1843	 49.11	0	2029836..2030171	-	111	30063417	-	S2126	-	bacteriophage protein
1844	 51.54	0	2030171..2030527	-	118	30063418	-	S2127	-	hypothetical protein
1845	 53.77	0	2030527..2032023	-	498	30063419	-	S2128	-	putative sheath protein
1846	 50.59	0	2032191..2032445	-	84	30063420	-	S2129	-	hypothetical protein
1847	 52.38	0	2032575..2033288	-	237	30063421	-	S2130	-	IS600 orfB
1848	 46.20	-1	2033429..2033731	-	100	30063422	-	S2131	-	IS600 orfA
1849	 54.70	0	2034606..2034956	-	116	30063423	-	S2133	-	ISSfl3 orfB
1850	 51.81	0	2034953..2035450	-	165	30063424	-	S2134	-	ISSfl3 orfA
1851	 46.20	-1	2036742..2037425	-	227	30063425	-	S2139	-	putative Q antiterminator of prophage
1852	 52.19	0	2037422..2037787	-	121	30063426	-	S2140	-	putative crossover junction endodeoxyribonuclease
1853	 53.09	0	2037788..2038774	-	328	30063427	-	S2142	-	hypothetical protein
1854	 54.37	0	2038773..2039252	+	159	30063428	-	S2141	-	hypothetical protein
1855	 51.17	0	2039294..2039506	-	70	30063429	-	S2143	-	putative cell killing protein of prophage
1856	 47.32	-1	2040101..2040436	-	111	30063430	-	S2144	-	hypothetical protein
1857	 47.15	-1	2040562..2040684	+	40	30063431	-	S2145	-	hypothetical protein
1858	 43.97	-1	2040864..2041709	+	281	30063432	-	S2146	-	putative integrase for prophage CP-933U
1859	 45.16	-1	2041906..2042742	+	278	30063433	-	S2148	-	hypothetical protein
1860	 52.93	0	2043593..2044342	+	249	30063434	-	S2152	-	putative integrase
1861	 46.75	-1	2045315..2045545	-	76	30063435	-	S2155	-	IS911 orfA
1862	 46.20	-1	2046243..2046545	+	100	30063436	-	S2157	-	IS600 orfA
1863	 52.24	0	2046686..2047399	+	237	30063437	-	S2158	-	IS600 orfB
1864	 49.48	0	2047751..2049205	+	484	30063438	amn	S2160	-	AMP nucleosidase
1865	 39.61	-2	2049548..2050264	+	238	30063439	-	S2161	-	hypothetical protein
1866	 47.42	-1	2052641..2053591	-	316	30063440	cbl	S2165	-	transcriptional regulator Cbl
1867	 48.37	0	2053693..2054610	-	305	30063441	nac	S2166	-	nitrogen assimilation transcriptional regulator
1868	 49.04	0	2055069..2056004	-	311	30063442	erfK	S2168	-	hypothetical protein
1869	 51.20	0	2056066..2057145	-	359	30063443	cobT	S2169	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1870	 53.36	0	2057157..2057900	-	247	30063444	cobS	S2170	-	cobalamin synthase
1871	 52.38	0	2058418..2059131	-	237	30063445	-	S2172	-	IS600 orfB
1872	 46.20	-1	2059272..2059574	-	100	30063446	-	S2173	-	IS600 orfA
1873	 54.74	0	2059817..2060143	+	108	30063447	is629a	S2175	-	IS629 orfA
1874	 54.78	0	2060379..2061026	+	215	30063448	is629b	S2176	-	IS629 orfB
1875	 46.46	-1	2061887..2062282	-	131	30063449	yeeX	S2177	-	hypothetical protein
1876	 50.22	0	2062757..2063431	+	224	30063450	-	S2179	-	ISSfl3 orfA
1877	 52.58	0	2063428..2063640	+	70	30063451	-	S2180	-	ISSfl3 orfB
1878	 53.18	0	2063643..2064161	-	172	30063452	-	S2181	-	IS629 orfA
1879	 55.37	0	2064173..2064526	-	117	30063453	-	S2182	-	IS629 orfB
1880	 52.37	0	2065084..2066685	+	533	30063454	-	S2184	-	ISSfl3 orfC
1881	 45.40	-1	2066754..2067068	+	104	30063455	-	S2185	-	hypothetical protein
1882	 49.40	0	2067528..2067776	-	82	30063456	-	S2187	-	ISSfl3 orfD
1883	 50.79	0	2068553..2069125	-	190	30063457	-	S2189	-	ISSfl3 orfC
1884	 54.99	0	2069122..2069472	-	116	30063458	-	S2190	-	ISSfl3 orfB
1885	 51.81	0	2069469..2069966	-	165	30063459	-	S2191	-	ISSfl3 orfA
1886	 50.11	0	2071243..2072667	+	474	30063460	sbcB	S2193	-	exonuclease I
1887	 51.32	0	2072710..2072937	-	75	30063461	yeeD	S2194	-	hypothetical protein
1888	 50.71	0	2072951..2074009	-	352	30063462	yeeE	S2195	-	putative transport system permease protein
1889	 52.91	0	2074188..2075546	-	452	30063463	yeeF	S2196	-	putative amino acid/amine transport protein
1890	 49.90	0	2075759..2076742	-	327	30063464	yeeY	S2197	-	putative LYSR-type transcriptional regulator
1891	 51.15	0	2076788..2077612	-	274	30063465	-	S2198	-	putative enzyme of sugar metabolism
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.