version 1.0
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354 4061 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1772 52.78 0 1953585..1954088 + 167 30063345 - S2034 - IS1 orfB 1773 50.81 0 1954526..1955326 - 266 30063346 otsB S2036 - trehalose-6-phosphate phosphatase 1774 50.81 0 1955493..1956482 - 329 30063347 araH S2038 - L-arabinose transporter permease protein 1775 52.48 0 1956494..1958008 - 504 30063348 araG S2039 - L-arabinose transporter ATP-binding protein 1776 48.21 0 1959864..1960367 + 167 30063349 yecI S2041 - ferritin-like protein 1777 50.62 0 1961162..1961485 + 107 30063351 - S2043 - hypothetical protein 1778 42.97 -2 1961656..1962153 + 165 30063352 ftn S2044 - ferritin 1779 47.08 -1 1962190..1962429 - 79 30063353 yecH S2045 - hypothetical protein 1780 50.91 0 1962619..1963830 + 403 30063354 tyrP S2046 - tyrosine-specific transport protein 1781 52.40 0 1963892..1964557 - 221 30063355 yecA S2047 - hypothetical protein 1782 52.46 0 1965207..1965755 - 182 30063356 pgsA S2051 - phosphatidylglycerophosphate synthetase 1783 51.72 0 1965812..1967644 - 610 161486474 uvrC S2052 - excinuclease ABC subunit C 1784 49.01 0 1967641..1968297 - 218 30063358 uvrY S2053 - response regulator 1785 48.00 0 1968756..1968980 + 74 30063359 yecF S2054 - hypothetical protein 1786 47.05 -1 1969007..1969633 - 208 30063360 sdiA S2055 - transcriptional regulator of ftsQAZ gene cluster 1787 54.58 0 1969863..1970615 - 250 30063361 yecC S2056 - putative amino-acid ABC transporter ATP-binding protein YecC 1788 53.36 0 1970612..1971280 - 222 30063362 yecS S2057 - putative transport system permease protein (former yecC) 1789 54.10 0 1971295..1972281 - 328 161486473 yedO S2058 - D-cysteine desulfhydrase 1790 46.26 -1 1973275..1973862 - 195 30063364 fliZ S2060 - protein FliZ 1791 48.22 0 1974756..1976408 - 550 30063365 fliC S2062 - flagellin 1792 52.24 0 1976674..1978080 + 468 30063366 fliD S2063 - flagellar capping protein 1793 48.18 0 1978105..1978515 + 136 30063367 fliS S2064 - flagellar protein FliS 1794 51.91 0 1978515..1978880 + 121 30063368 fliT S2065 - flagellar biosynthesis protein FliT 1795 49.80 0 1978958..1980445 + 495 30063369 amyA S2066 - cytoplasmic alpha-amylase 1796 57.00 +1 1980479..1980892 - 137 30063370 yedD S2067 - hypothetical protein 1797 54.48 0 1981079..1982284 + 401 30063371 yedE S2068 - putative inner membrane protein 1798 48.29 0 1982281..1982514 + 77 30063372 yedF S2069 - hypothetical protein 1799 52.17 0 1983331..1984137 - 268 30063373 - S2072 - putative virulence protein 1800 44.14 -1 1985546..1986628 + 360 30063374 nmpC S2073 - putative outer membrane porin protein C precurser 1801 37.13 -2 1987178..1987915 - 245 30063375 - S4819 - putative regulator 1802 42.39 -2 1987925..1988476 - 183 30063376 ybcL S4820 - putative kinase inhibitor 1803 43.24 -2 1988645..1988977 - 110 30063377 emrE S4821 - multidrug efflux protein 1804 54.92 0 1989322..1989636 - 104 30063378 fliE S2076 - flagellar hook-basal body protein FliE 1805 56.22 +1 1991502..1992497 + 331 30063379 fliG S2078 - flagellar motor switch protein G 1806 57.21 +1 1992490..1993176 + 228 30063380 fliH S2079 - flagellar assembly protein H 1807 58.01 +1 1993176..1994549 + 457 30063381 fliI S2080 - flagellum-specific ATP synthase 1808 54.43 0 1994909..1996036 + 375 30063382 fliK S2082 - flagellar hook-length control protein 1809 52.90 0 1996141..1996605 + 154 30063383 fliL S2083 - flagellar basal body-associated protein FliL 1810 53.03 0 1996610..1997614 + 334 30063384 fliM S2084 - flagellar motor switch protein FliM 1811 55.80 +1 1997611..1998024 + 137 30063385 fliN S2085 - flagellar motor switch protein FliN 1812 55.74 +1 1998027..1998392 + 121 161486472 fliO S2086 - flagellar biosynthesis protein FliO 1813 51.11 0 1999167..1999436 + 89 30063387 fliQ S2088 - flagellar biosynthesis protein FliQ 1814 47.20 -1 1999445..2000230 + 261 30063388 fliR S2089 - flagellar biosynthesis protein FliR 1815 38.30 -2 2000515..2001138 + 207 30063389 rcsA S2090 - positive regulator for ctr capsule biosynthesis, positive transcription factor 1816 50.79 0 2001182..2001370 - 62 30063390 dsrB S2091 - hypothetical protein 1817 48.68 0 2001533..2001760 + 75 30063391 - S2092 - hypothetical protein 1818 51.91 0 2004735..2004917 - 60 30063392 - S2096 - hypothetical protein 1819 52.72 0 2004996..2005913 - 305 30063393 yedI S2097 - hypothetical protein 1820 53.64 0 2006086..2007006 + 306 30063394 yedA S2098 - hypothetical protein 1821 56.26 +1 2006995..2007465 - 156 30063395 vsr S2099 - DNA mismatch endonuclease, patch repair protein 1822 51.87 0 2007446..2008864 - 472 30063396 dcm S2100 - DNA cytosine methylase 1823 50.43 0 2009769..2010581 - 270 30063397 - S2103 - ISEhe3 orfB 1824 49.10 0 2010638..2010916 - 92 30063398 - S2104 - ISEhe3 orfA 1825 45.27 -1 2010943..2011830 + 295 30063399 - S2105 - putative outer membrane pore protein 1826 54.86 0 2011755..2012660 - 301 161486471 - S2106 - insertion element IS2 transposase InsD 1827 52.46 0 2012618..2012983 - 121 161486470 - S2107 - insertion sequence 2 OrfA protein 1828 41.43 -2 2013047..2013256 + 69 30063402 - S2108 - putative outer membrane protein 1829 52.90 0 2013884..2014159 + 91 30063403 - S2109 - IS1 orfA 1830 53.37 0 2014078..2014581 + 167 30063404 - S2110 - IS1 orfB 1831 48.11 0 2014627..2015499 + 290 30063405 yedU S2111 - chaperone protein HchA 1832 39.44 -2 2015585..2016943 - 452 30063406 yedV S2112 - putative 2-component sensor protein 1833 44.64 -1 2016943..2017614 - 223 30063407 yedW S2113 - transcriptional regulatory protein YedW 1834 42.27 -2 2017747..2018160 + 137 30063408 - S2114 - hypothetical protein 1835 47.96 0 2019274..2019909 + 211 30063409 - S2116 - putative sulfite oxidase subunit YedZ 1836 38.86 -2 2020167..2020817 + 216 30063410 - S2117 - hypothetical protein 1837 49.63 0 2021895..2022164 - 89 30063411 - S2118 - putative bacteriophage protein 1838 47.93 0 2023205..2024848 + 547 30063412 ipaH_5 S2119 - invasion plasmid antigen 1839 54.76 0 2025028..2025405 - 125 30063413 - S2121 - hypothetical protein 1840 52.90 0 2026462..2026737 + 91 30063414 - S2122 - IS1 orfA 1841 52.98 0 2026656..2027159 + 167 30063415 - S2123 - IS1 orfB 1842 52.10 0 2027802..2029751 - 649 30063416 - S2124 - putative tail protein 1843 49.11 0 2029836..2030171 - 111 30063417 - S2126 - bacteriophage protein 1844 51.54 0 2030171..2030527 - 118 30063418 - S2127 - hypothetical protein 1845 53.77 0 2030527..2032023 - 498 30063419 - S2128 - putative sheath protein 1846 50.59 0 2032191..2032445 - 84 30063420 - S2129 - hypothetical protein 1847 52.38 0 2032575..2033288 - 237 30063421 - S2130 - IS600 orfB 1848 46.20 -1 2033429..2033731 - 100 30063422 - S2131 - IS600 orfA 1849 54.70 0 2034606..2034956 - 116 30063423 - S2133 - ISSfl3 orfB 1850 51.81 0 2034953..2035450 - 165 30063424 - S2134 - ISSfl3 orfA 1851 46.20 -1 2036742..2037425 - 227 30063425 - S2139 - putative Q antiterminator of prophage 1852 52.19 0 2037422..2037787 - 121 30063426 - S2140 - putative crossover junction endodeoxyribonuclease 1853 53.09 0 2037788..2038774 - 328 30063427 - S2142 - hypothetical protein 1854 54.37 0 2038773..2039252 + 159 30063428 - S2141 - hypothetical protein 1855 51.17 0 2039294..2039506 - 70 30063429 - S2143 - putative cell killing protein of prophage 1856 47.32 -1 2040101..2040436 - 111 30063430 - S2144 - hypothetical protein 1857 47.15 -1 2040562..2040684 + 40 30063431 - S2145 - hypothetical protein 1858 43.97 -1 2040864..2041709 + 281 30063432 - S2146 - putative integrase for prophage CP-933U 1859 45.16 -1 2041906..2042742 + 278 30063433 - S2148 - hypothetical protein 1860 52.93 0 2043593..2044342 + 249 30063434 - S2152 - putative integrase 1861 46.75 -1 2045315..2045545 - 76 30063435 - S2155 - IS911 orfA 1862 46.20 -1 2046243..2046545 + 100 30063436 - S2157 - IS600 orfA 1863 52.24 0 2046686..2047399 + 237 30063437 - S2158 - IS600 orfB 1864 49.48 0 2047751..2049205 + 484 30063438 amn S2160 - AMP nucleosidase 1865 39.61 -2 2049548..2050264 + 238 30063439 - S2161 - hypothetical protein 1866 47.42 -1 2052641..2053591 - 316 30063440 cbl S2165 - transcriptional regulator Cbl 1867 48.37 0 2053693..2054610 - 305 30063441 nac S2166 - nitrogen assimilation transcriptional regulator 1868 49.04 0 2055069..2056004 - 311 30063442 erfK S2168 - hypothetical protein 1869 51.20 0 2056066..2057145 - 359 30063443 cobT S2169 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1870 53.36 0 2057157..2057900 - 247 30063444 cobS S2170 - cobalamin synthase 1871 52.38 0 2058418..2059131 - 237 30063445 - S2172 - IS600 orfB 51.60 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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