IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1694	 52.15	0	1873382..1874704	-	440	30063267	yebA	S1932	-	hypothetical protein
1695	 49.20	0	1874720..1875652	-	310	161486476	znuA	S1933	-	high-affinity zinc transporter periplasmic component
1696	 48.81	0	1875731..1876486	+	251	30063269	znuC	S1934	-	high-affinity zinc transporter ATPase
1697	 51.02	0	1876483..1877268	+	261	30063270	znuB	S1935	-	high-affinity zinc transporter membrane component
1698	 52.32	0	1877415..1878425	-	336	30063271	ruvB	S1936	-	Holliday junction DNA helicase B
1699	 52.61	0	1878434..1879045	-	203	30063272	ruvA	S1937	-	Holliday junction DNA helicase motor protein
1700	 56.13	+1	1879923..1880444	-	173	30063273	ruvC	S1939	-	Holliday junction resolvase
1701	 52.77	0	1880479..1881219	-	246	30063274	yebC	S1940	-	hypothetical protein
1702	 52.38	0	1881248..1881730	-	160	30063275	ntpA	S1941	-	dATP pyrophosphohydrolase
1703	 53.81	0	1881818..1883590	-	590	30063276	aspS	S1942	-	aspartyl-tRNA synthetase
1704	 57.64	+1	1884346..1885542	+	398	30063277	-	S1944	-	ISSfl4 orf
1705	 44.18	-1	1886271..1886519	+	82	30063278	-	S1946	-	hypothetical protein
1706	 47.03	-1	1887119..1888870	+	583	30063279	ipaH_4	S1947	-	invasion plasmid antigen
1707	 60.00	+2	1888871..1889050	-	59	30063280	-	S1948	-	hypothetical protein
1708	 53.53	0	1889050..1889673	-	207	30063281	-	S1949	-	hypothetical protein
1709	 50.09	0	1891397..1891939	+	180	30063282	-	S1950	-	hypothetical protein
1710	 50.85	0	1892281..1892691	+	136	30063283	-	S1952	-	insertion sequence 2 OrfA protein
1711	 55.30	0	1892649..1893554	+	301	161486475	-	S1953	-	insertion element IS2 transposase InsD
1712	 39.13	-2	1894097..1894372	+	91	30063285	-	S1954	-	hypothetical protein
1713	 50.32	0	1894472..1895896	+	474	30063286	-	S1955	-	putative exodeoxyribonuclease VIII
1714	 48.91	0	1897139..1897459	+	106	30063287	-	S1957	-	putative host-nuclease inhibitor protein Gam
1715	 47.32	-1	1897519..1898562	+	347	30063288	-	S1958	-	putative bacteriophage protein
1716	 54.43	0	1898637..1898963	+	108	30063289	-	S1959	-	IS629 orfA
1717	 54.78	0	1899199..1899846	+	215	30063290	-	S1960	-	IS629 orfB
1718	 52.78	0	1900250..1900753	-	167	30063291	-	S1961	-	IS1 orfB
1719	 52.90	0	1900672..1900947	-	91	30063292	-	S1962	-	IS1 orfA
1720	 47.69	0	1901037..1901642	+	201	30063293	-	S1963	-	putative integrase for prophage CP-933R
1721	 48.48	0	1902098..1902988	+	296	30063294	sitA	S1964	-	Iron transport protein
1722	 51.33	0	1902988..1903815	+	275	30063295	sitB	S1965	-	Iron transport protein, ATP-binding component
1723	 51.86	0	1903812..1904669	+	285	30063296	sitC	S1966	-	Iron transport protein
1724	 49.42	0	1904666..1905523	+	285	30063297	sitD	S1967	-	Iron transport protein, inner membrane component
1725	 52.30	0	1905724..1906287	-	187	30063298	-	S1968	-	hypothetical protein
1726	 53.66	0	1906298..1907566	-	422	30063299	-	S1969	-	putative tail fiber protein
1727	 49.69	0	1907590..1908078	-	162	30063300	-	S1970	-	putative tail fiber assembly protein
1728	 49.51	0	1908138..1908341	-	67	30063301	-	S1971	-	hypothetical protein
1729	 52.10	0	1908558..1909271	-	237	30063302	-	S1972	-	IS600 orfB
1730	 48.10	0	1909479..1909688	-	69	30063303	-	S1973	-	IS1 orfB
1731	 52.54	0	1909901..1910176	-	91	30063304	-	S1975	-	IS1 orfA
1732	 53.43	0	1910765..1911391	-	208	30063305	-	S1978	-	IS911 orfB
1733	 44.88	-1	1911631..1911933	-	100	30063306	-	S1980	-	IS911 orfA
1734	 48.54	0	1912634..1914238	-	534	30063307	-	S1981	-	putative integrase
1735	 46.52	-1	1914839..1915528	-	229	30063308	-	S1986	-	putative Q antiterminator encoded by prophage CP-933P
1736	 51.11	0	1915525..1915884	-	119	30063309	-	S1987	-	putative crossover junction endodeoxyribonuclease
1737	 52.10	0	1916531..1917244	+	237	30063310	-	S1989	-	IS600 orfB
1738	 51.93	0	1917742..1918569	+	275	30063311	-	S1990	-	putative serine protease
1739	 52.00	0	1918613..1919362	+	249	30063312	-	S1991	-	hypothetical protein
1740	 50.18	0	1919359..1919928	+	189	30063313	-	S1992	-	hypothetical protein
1741	 47.33	-1	1920052..1920294	+	80	30063314	-	S1994	-	hypothetical protein
1742	 50.34	0	1920298..1920444	+	48	30063315	-	S1995	-	putative bacteriophage protein
1743	 44.88	-1	1921491..1921793	-	100	30063316	-	S1998	-	IS911 orfA
1744	 49.24	0	1922426..1922821	+	131	30063317	yecN	S2000	-	hypothetical protein
1745	 50.54	0	1922862..1923605	+	247	30063318	yecO	S2001	-	hypothetical protein
1746	 52.06	0	1923602..1924573	+	323	30063319	yecP	S2002	-	putative enzyme
1747	 52.06	0	1924738..1927167	-	809	30063320	bisZ	S2003	-	biotin sulfoxide reductase 2
1748	 47.68	0	1927192..1928292	-	366	30063321	yecK	S2004	-	putative cytochrome C-type protein
1749	 49.89	0	1928680..1929120	-	146	30063322	cutC	S2005	-	copper homeostasis protein
1750	 50.79	0	1929440..1930006	-	188	30063323	yecM	S2006	-	hypothetical protein
1751	 53.00	0	1930222..1931955	+	577	30063324	argS	S2007	-	arginyl-tRNA synthetase
1752	 52.18	0	1932840..1933274	-	144	30063325	-	S2009	-	IS629 orfB
1753	 53.21	0	1933709..1934035	-	108	30063326	-	S2011	-	IS629 orfA
1754	 55.75	+1	1934087..1934425	-	112	30063327	flhE	S2012	-	flagellar protein
1755	 55.11	0	1936449..1937642	-	397	30063328	flhB	S2014	-	flagellar biosynthesis protein FlhB
1756	 47.06	-1	1937878..1938336	+	152	30063329	-	S2015	-	hypothetical protein
1757	 44.88	-1	1939126..1939428	-	100	30063330	-	S2018	-	IS911 orfA
1758	 45.20	-1	1939569..1939964	+	131	30063331	-	S2019	-	hypothetical protein
1759	 52.24	0	1940459..1941172	+	237	30063332	-	S2020	-	IS600 orfB
1760	 53.33	0	1941677..1942321	-	214	30063333	cheZ	S2021	-	chemotaxis regulator CheZ
1761	 48.97	0	1942332..1942721	-	129	30063334	cheY	S2022	-	chemotaxis regulatory protein CheY
1762	 53.71	0	1942736..1943785	-	349	30063335	cheB	S2023	-	chemotaxis-specific methylesterase
1763	 53.89	0	1943788..1944648	-	286	30063336	cheR	S2024	-	chemotaxis methyltransferase CheR
1764	 53.87	0	1944667..1946268	-	533	30063337	tap	S2025	-	methyl-accepting protein IV
1765	 52.71	0	1946314..1947975	-	553	30063338	tar	S2026	-	methyl-accepting chemotaxis protein II, aspartate sensor receptor
1766	 51.59	0	1948120..1948623	-	167	30063339	cheW	S2027	-	purine-binding chemotaxis protein
1767	 53.18	0	1948644..1950608	-	654	30063340	cheA	S2028	-	chemotaxis protein CheA
1768	 53.07	0	1950613..1951539	-	308	30063341	motB	S2029	-	flagellar motor protein MotB
1769	 51.69	0	1951536..1952423	-	295	30063342	motA	S2030	-	flagellar motor protein MotA
1770	 49.05	0	1952550..1953128	-	192	30063343	flhC	S2031	-	transcriptional activator FlhC
1771	 52.90	0	1953391..1953666	+	91	30063344	-	S2033	-	IS1 orfA
1772	 52.78	0	1953585..1954088	+	167	30063345	-	S2034	-	IS1 orfB
1773	 50.81	0	1954526..1955326	-	266	30063346	otsB	S2036	-	trehalose-6-phosphate phosphatase
1774	 50.81	0	1955493..1956482	-	329	30063347	araH	S2038	-	L-arabinose transporter permease protein
1775	 52.48	0	1956494..1958008	-	504	30063348	araG	S2039	-	L-arabinose transporter ATP-binding protein
1776	 48.21	0	1959864..1960367	+	167	30063349	yecI	S2041	-	ferritin-like protein
1777	 50.62	0	1961162..1961485	+	107	30063351	-	S2043	-	hypothetical protein
1778	 42.97	-2	1961656..1962153	+	165	30063352	ftn	S2044	-	ferritin
1779	 47.08	-1	1962190..1962429	-	79	30063353	yecH	S2045	-	hypothetical protein
1780	 50.91	0	1962619..1963830	+	403	30063354	tyrP	S2046	-	tyrosine-specific transport protein
1781	 52.40	0	1963892..1964557	-	221	30063355	yecA	S2047	-	hypothetical protein
1782	 52.46	0	1965207..1965755	-	182	30063356	pgsA	S2051	-	phosphatidylglycerophosphate synthetase
1783	 51.72	0	1965812..1967644	-	610	161486474	uvrC	S2052	-	excinuclease ABC subunit C
1784	 49.01	0	1967641..1968297	-	218	30063358	uvrY	S2053	-	response regulator
1785	 48.00	0	1968756..1968980	+	74	30063359	yecF	S2054	-	hypothetical protein
1786	 47.05	-1	1969007..1969633	-	208	30063360	sdiA	S2055	-	transcriptional regulator of ftsQAZ gene cluster
1787	 54.58	0	1969863..1970615	-	250	30063361	yecC	S2056	-	putative amino-acid ABC transporter ATP-binding protein YecC
1788	 53.36	0	1970612..1971280	-	222	30063362	yecS	S2057	-	putative transport system permease protein (former yecC)
1789	 54.10	0	1971295..1972281	-	328	161486473	yedO	S2058	-	D-cysteine desulfhydrase
1790	 46.26	-1	1973275..1973862	-	195	30063364	fliZ	S2060	-	protein FliZ
1791	 48.22	0	1974756..1976408	-	550	30063365	fliC	S2062	-	flagellin
1792	 52.24	0	1976674..1978080	+	468	30063366	fliD	S2063	-	flagellar capping protein
1793	 48.18	0	1978105..1978515	+	136	30063367	fliS	S2064	-	flagellar protein FliS
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.