IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1654	 50.15	0	1823036..1823689	-	217	30063227	fdnI	S1882	-	formate dehydrogenase-N subunit gamma
1655	 54.92	0	1823682..1824566	-	294	30063228	fdnH	S1883	-	formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit
1656	 53.84	0	1824579..1827626	-	1015	30063229	fdnG	S1884	-	formate dehydrogenase-N, nitrate-inducible, alpha subunit
1657	 49.77	0	1827858..1828739	+	293	30063230	yddG	S1885	-	hypothetical protein
1658	 44.50	-1	1828994..1830094	+	366	30063231	-	S1887	-	putative outer membrane porin protein
1659	 32.22	-2	1830853..1831842	+	329	30063232	-	S1888	-	putative glycoprotein
1660	 52.90	0	1832130..1832405	+	91	30063233	-	S1890	-	IS1 orfA
1661	 53.37	0	1832324..1832827	+	167	30063234	-	S1891	-	IS1 orfB
1662	 49.10	0	1833285..1834673	+	462	30063235	narU	S1892	-	nitrite extrusion protein 2
1663	 54.63	0	1839823..1841043	+	406	30063236	-	S1896	-	IS91 orf
1664	 43.71	-1	1841282..1842004	-	240	30063237	-	S1897	-	putative DNA-binding transcriptional regulator
1665	 52.52	0	1842145..1843275	-	376	30063238	yncB	S1898	-	putative oxidoreductase
1666	 55.30	0	1843312..1844217	-	301	161486478	-	S1899	-	insertion element IS2 transposase InsD
1667	 53.01	0	1844175..1844540	-	121	161486477	-	S1900	-	insertion sequence 2 OrfA protein
1668	 52.02	0	1844699..1845217	+	172	30063241	-	S1901	-	putative resistance protein
1669	 52.89	0	1845214..1845663	+	149	30063242	-	S1902	-	hypothetical protein
1670	 53.42	0	1845664..1845897	-	77	30063243	-	S1903	-	hypothetical protein
1671	 44.58	-1	1845983..1846231	-	82	30063244	-	S1904	-	hypothetical protein
1672	 53.19	0	1847867..1849291	-	474	30063245	-	S1905	-	gamma-aminobutyraldehyde dehydrogenase
1673	 54.34	0	1849313..1850107	-	264	30063246	-	S1906	-	putative transport system permease protein
1674	 55.12	0	1850946..1851560	+	204	30063247	-	S1908	-	IS1294 transposase
1675	 52.80	0	1851560..1852006	+	148	30063248	-	S1909	-	IS1294 transposase
1676	 50.24	0	1852484..1852690	-	68	30063249	-	S1910	-	IS629 orfB
1677	 56.67	+1	1852746..1853105	-	119	30063250	-	S1911	-	IS629 orfB
1678	 53.52	0	1853368..1853694	-	108	30063251	-	S1912	-	IS629 orfA
1679	 46.20	-1	1856431..1856772	-	113	30063252	-	S1915	-	hypothetical protein
1680	 50.40	0	1857661..1858035	-	124	30063253	-	S1917	-	hypothetical protein
1681	 48.48	0	1858174..1858404	+	76	30063254	holE	S1918	-	DNA polymerase III subunit theta
1682	 51.88	0	1858737..1859162	+	141	30063255	-	S1919	-	hypothetical protein
1683	 51.43	0	1859186..1859848	+	220	30063256	-	S1920	-	exodeoxyribonuclease X
1684	 49.93	0	1859845..1861905	-	686	30063257	ptrB	S1921	-	protease 2
1685	 52.58	0	1862115..1862774	-	219	30063258	yebE	S1922	-	hypothetical protein
1686	 50.42	0	1863101..1863457	-	118	30063259	yebF	S1923	-	hypothetical protein
1687	 53.69	0	1863948..1865126	+	392	30063260	purT	S1925	-	phosphoribosylglycinamide formyltransferase 2
1688	 56.07	+1	1865182..1865823	-	213	30063261	eda	S1926	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
1689	 53.59	0	1865860..1867671	-	603	30063262	edd	S1927	-	phosphogluconate dehydratase
1690	 51.42	0	1867906..1869381	-	491	30063263	zwf	S1928	-	glucose-6-phosphate 1-dehydrogenase
1691	 50.36	0	1869719..1870540	+	273	30063264	yebK	S1929	-	DNA-binding transcriptional regulator HexR
1692	 52.60	0	1870718..1872160	+	480	30063265	pykA	S1930	-	pyruvate kinase
1693	 51.34	0	1872291..1873262	-	323	30063266	msbB	S1931	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
1694	 52.15	0	1873382..1874704	-	440	30063267	yebA	S1932	-	hypothetical protein
1695	 49.20	0	1874720..1875652	-	310	161486476	znuA	S1933	-	high-affinity zinc transporter periplasmic component
1696	 48.81	0	1875731..1876486	+	251	30063269	znuC	S1934	-	high-affinity zinc transporter ATPase
1697	 51.02	0	1876483..1877268	+	261	30063270	znuB	S1935	-	high-affinity zinc transporter membrane component
1698	 52.32	0	1877415..1878425	-	336	30063271	ruvB	S1936	-	Holliday junction DNA helicase B
1699	 52.61	0	1878434..1879045	-	203	30063272	ruvA	S1937	-	Holliday junction DNA helicase motor protein
1700	 56.13	+1	1879923..1880444	-	173	30063273	ruvC	S1939	-	Holliday junction resolvase
1701	 52.77	0	1880479..1881219	-	246	30063274	yebC	S1940	-	hypothetical protein
1702	 52.38	0	1881248..1881730	-	160	30063275	ntpA	S1941	-	dATP pyrophosphohydrolase
1703	 53.81	0	1881818..1883590	-	590	30063276	aspS	S1942	-	aspartyl-tRNA synthetase
1704	 57.64	+1	1884346..1885542	+	398	30063277	-	S1944	-	ISSfl4 orf
1705	 44.18	-1	1886271..1886519	+	82	30063278	-	S1946	-	hypothetical protein
1706	 47.03	-1	1887119..1888870	+	583	30063279	ipaH_4	S1947	-	invasion plasmid antigen
1707	 60.00	+2	1888871..1889050	-	59	30063280	-	S1948	-	hypothetical protein
1708	 53.53	0	1889050..1889673	-	207	30063281	-	S1949	-	hypothetical protein
1709	 50.09	0	1891397..1891939	+	180	30063282	-	S1950	-	hypothetical protein
1710	 50.85	0	1892281..1892691	+	136	30063283	-	S1952	-	insertion sequence 2 OrfA protein
1711	 55.30	0	1892649..1893554	+	301	161486475	-	S1953	-	insertion element IS2 transposase InsD
1712	 39.13	-2	1894097..1894372	+	91	30063285	-	S1954	-	hypothetical protein
1713	 50.32	0	1894472..1895896	+	474	30063286	-	S1955	-	putative exodeoxyribonuclease VIII
1714	 48.91	0	1897139..1897459	+	106	30063287	-	S1957	-	putative host-nuclease inhibitor protein Gam
1715	 47.32	-1	1897519..1898562	+	347	30063288	-	S1958	-	putative bacteriophage protein
1716	 54.43	0	1898637..1898963	+	108	30063289	-	S1959	-	IS629 orfA
1717	 54.78	0	1899199..1899846	+	215	30063290	-	S1960	-	IS629 orfB
1718	 52.78	0	1900250..1900753	-	167	30063291	-	S1961	-	IS1 orfB
1719	 52.90	0	1900672..1900947	-	91	30063292	-	S1962	-	IS1 orfA
1720	 47.69	0	1901037..1901642	+	201	30063293	-	S1963	-	putative integrase for prophage CP-933R
1721	 48.48	0	1902098..1902988	+	296	30063294	sitA	S1964	-	Iron transport protein
1722	 51.33	0	1902988..1903815	+	275	30063295	sitB	S1965	-	Iron transport protein, ATP-binding component
1723	 51.86	0	1903812..1904669	+	285	30063296	sitC	S1966	-	Iron transport protein
1724	 49.42	0	1904666..1905523	+	285	30063297	sitD	S1967	-	Iron transport protein, inner membrane component
1725	 52.30	0	1905724..1906287	-	187	30063298	-	S1968	-	hypothetical protein
1726	 53.66	0	1906298..1907566	-	422	30063299	-	S1969	-	putative tail fiber protein
1727	 49.69	0	1907590..1908078	-	162	30063300	-	S1970	-	putative tail fiber assembly protein
1728	 49.51	0	1908138..1908341	-	67	30063301	-	S1971	-	hypothetical protein
1729	 52.10	0	1908558..1909271	-	237	30063302	-	S1972	-	IS600 orfB
1730	 48.10	0	1909479..1909688	-	69	30063303	-	S1973	-	IS1 orfB
1731	 52.54	0	1909901..1910176	-	91	30063304	-	S1975	-	IS1 orfA
1732	 53.43	0	1910765..1911391	-	208	30063305	-	S1978	-	IS911 orfB
1733	 44.88	-1	1911631..1911933	-	100	30063306	-	S1980	-	IS911 orfA
1734	 48.54	0	1912634..1914238	-	534	30063307	-	S1981	-	putative integrase
1735	 46.52	-1	1914839..1915528	-	229	30063308	-	S1986	-	putative Q antiterminator encoded by prophage CP-933P
1736	 51.11	0	1915525..1915884	-	119	30063309	-	S1987	-	putative crossover junction endodeoxyribonuclease
1737	 52.10	0	1916531..1917244	+	237	30063310	-	S1989	-	IS600 orfB
1738	 51.93	0	1917742..1918569	+	275	30063311	-	S1990	-	putative serine protease
1739	 52.00	0	1918613..1919362	+	249	30063312	-	S1991	-	hypothetical protein
1740	 50.18	0	1919359..1919928	+	189	30063313	-	S1992	-	hypothetical protein
1741	 47.33	-1	1920052..1920294	+	80	30063314	-	S1994	-	hypothetical protein
1742	 50.34	0	1920298..1920444	+	48	30063315	-	S1995	-	putative bacteriophage protein
1743	 44.88	-1	1921491..1921793	-	100	30063316	-	S1998	-	IS911 orfA
1744	 49.24	0	1922426..1922821	+	131	30063317	yecN	S2000	-	hypothetical protein
1745	 50.54	0	1922862..1923605	+	247	30063318	yecO	S2001	-	hypothetical protein
1746	 52.06	0	1923602..1924573	+	323	30063319	yecP	S2002	-	putative enzyme
1747	 52.06	0	1924738..1927167	-	809	30063320	bisZ	S2003	-	biotin sulfoxide reductase 2
1748	 47.68	0	1927192..1928292	-	366	30063321	yecK	S2004	-	putative cytochrome C-type protein
1749	 49.89	0	1928680..1929120	-	146	30063322	cutC	S2005	-	copper homeostasis protein
1750	 50.79	0	1929440..1930006	-	188	30063323	yecM	S2006	-	hypothetical protein
1751	 53.00	0	1930222..1931955	+	577	30063324	argS	S2007	-	arginyl-tRNA synthetase
1752	 52.18	0	1932840..1933274	-	144	30063325	-	S2009	-	IS629 orfB
1753	 53.21	0	1933709..1934035	-	108	30063326	-	S2011	-	IS629 orfA
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.