IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1601	 53.70	0	1757123..1758148	+	341	30063174	purR	S1818	-	DNA-binding transcriptional repressor PurR
1602	 53.48	0	1758145..1759077	-	310	30063175	ydhB	S1819	-	putative DNA-binding transcriptional regulator
1603	 53.55	0	1759190..1760401	+	403	30063176	ydhC	S1820	-	inner membrane transport protein YdhC
1604	 48.22	0	1760692..1761840	+	382	30063177	cfa	S1821	-	cyclopropane fatty acyl phospholipid synthase
1605	 47.82	0	1761880..1762521	-	213	30063178	ribE	S1822	-	riboflavin synthase subunit alpha
1606	 52.98	0	1762736..1764109	+	457	30063179	ydhE	S1823	-	multidrug efflux protein
1607	 51.87	0	1764150..1765406	-	418	30063180	-	S1824	-	hypothetical protein
1608	 44.77	-1	1765979..1766284	+	101	30063181	-	S1827	-	hypothetical protein
1609	 52.89	0	1767844..1768656	-	270	30063182	-	S1829	-	hypothetical protein
1610	 49.36	0	1768660..1769445	-	261	30063183	ydhU	S1830	-	hypothetical protein
1611	 49.72	0	1769442..1770161	-	239	30063184	-	S1831	-	putative oxidoreductase, Fe-S subunit
1612	 52.43	0	1770174..1770812	-	212	30063185	-	S1832	-	hypothetical protein
1613	 49.12	0	1772947..1773573	-	208	30063186	-	S1834	-	hypothetical protein
1614	 46.67	-1	1774029..1774238	-	69	30063187	-	S1835	-	hypothetical protein
1615	 52.90	0	1774325..1774600	+	91	30063188	-	S1836	-	IS1 orfA
1616	 53.17	0	1774519..1775022	+	167	30063189	-	S1837	-	IS1 orfB
1617	 50.04	0	1775571..1776983	+	470	30063190	pykF	S1838	-	pyruvate kinase
1618	 50.63	0	1777294..1777530	+	78	30063191	lpp	S1839	-	murein lipoprotein
1619	 51.54	0	1777593..1778597	-	334	30063192	ynhG	S1840	-	hypothetical protein
1620	 49.64	0	1778746..1779162	-	138	30063193	ynhA	S1841	-	cysteine desufuration protein SufE
1621	 55.12	0	1779175..1780395	-	406	30063194	-	S1842	-	selenocysteine lyase
1622	 52.99	0	1780392..1781663	-	423	30063195	ynhC	S1843	-	cysteine desulfurase activator complex subunit SufD
1623	 50.20	0	1781638..1782384	-	248	30063196	sufC	S1844	-	cysteine desulfurase ATPase component
1624	 51.81	0	1782394..1783881	-	495	30063197	ynhE	S1845	-	cysteine desulfurase activator complex subunit SufB
1625	 52.85	0	1783890..1784258	-	122	30063198	sufA	S1846	-	iron-sulfur cluster assembly scaffold protein
1626	 44.44	-1	1784806..1785075	-	89	30063199	-	S1847	-	hypothetical protein
1627	 50.85	0	1785094..1785504	-	136	30063200	-	S1848	-	hypothetical protein
1628	 53.81	0	1785501..1788557	-	1018	30063201	ydiJ	S1849	-	putative oxidase
1629	 54.99	0	1788946..1790058	+	370	30063202	-	S1850	-	putative inner membrane protein
1630	 45.94	-1	1790487..1790843	+	118	30063203	-	S1851	-	hypothetical protein
1631	 44.68	-1	1791003..1792148	+	381	30063204	-	S1852	-	putative transport system permease protein
1632	 45.91	-1	1792442..1793602	+	386	30063205	-	S1853	-	putative amino acid/amine transport protein
1633	 47.75	0	1793614..1794480	+	288	30063206	aroE	S1854	-	quinate/shikimate dehydrogenase
1634	 50.99	0	1794511..1795269	+	252	30063207	aroD	S1855	-	3-dehydroquinate dehydratase
1635	 52.58	0	1795351..1795854	-	167	30063208	-	S1857	-	IS1 orfB
1636	 52.54	0	1795773..1796048	-	91	30063209	-	S1856	-	IS1 orfA
1637	 38.17	-2	1797701..1798858	+	385	30063210	-	S1859	-	putative enzyme
1638	 45.66	-1	1800872..1803232	+	786	30063211	yddB	S1861	-	hypothetical protein
1639	 52.78	0	1803502..1804005	-	167	30063212	-	S1862	-	IS1 orfB
1640	 52.90	0	1803924..1804199	-	91	30063213	-	S1863	-	IS1 orfA
1641	 52.90	0	1806810..1807085	+	91	30063214	-	S1865	-	IS1 orfA
1642	 53.37	0	1807004..1807507	+	167	30063215	-	S1866	-	IS1 orfB
1643	 53.89	0	1807985..1809385	+	466	30063216	gadB	S1867	-	glutamate decarboxylase isozyme
1644	 48.31	0	1809541..1811076	+	511	30063217	xasA	S1868	-	acid sensitivity protein, putative transporter
1645	 51.82	0	1811207..1812526	+	439	30063218	-	S1869	-	hypothetical protein
1646	 53.51	0	1815194..1816090	+	298	30063219	-	S1873	-	ATP-dependent peptide transporter membrane subunit
1647	 54.10	0	1816087..1817073	+	328	30063220	-	S1874	-	putative ATP-binding component of a transport system
1648	 50.23	0	1818048..1818479	-	143	30063221	osmC	S1876	-	osmotically inducible protein
1649	 52.78	0	1818652..1819155	-	167	30063222	-	S1877	-	IS1 orfB
1650	 52.90	0	1819074..1819349	-	91	30063223	-	S1878	-	IS1 orfA
1651	 51.88	0	1819537..1821234	+	565	30063224	sfcA	S1879	-	malate dehydrogenase
1652	 52.52	0	1821368..1822378	+	336	30063225	adhP	S1880	-	alcohol dehydrogenase
1653	 49.04	0	1822446..1822808	+	120	30063226	yddM	S1881	-	hypothetical protein
1654	 50.15	0	1823036..1823689	-	217	30063227	fdnI	S1882	-	formate dehydrogenase-N subunit gamma
1655	 54.92	0	1823682..1824566	-	294	30063228	fdnH	S1883	-	formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit
1656	 53.84	0	1824579..1827626	-	1015	30063229	fdnG	S1884	-	formate dehydrogenase-N, nitrate-inducible, alpha subunit
1657	 49.77	0	1827858..1828739	+	293	30063230	yddG	S1885	-	hypothetical protein
1658	 44.50	-1	1828994..1830094	+	366	30063231	-	S1887	-	putative outer membrane porin protein
1659	 32.22	-2	1830853..1831842	+	329	30063232	-	S1888	-	putative glycoprotein
1660	 52.90	0	1832130..1832405	+	91	30063233	-	S1890	-	IS1 orfA
1661	 53.37	0	1832324..1832827	+	167	30063234	-	S1891	-	IS1 orfB
1662	 49.10	0	1833285..1834673	+	462	30063235	narU	S1892	-	nitrite extrusion protein 2
1663	 54.63	0	1839823..1841043	+	406	30063236	-	S1896	-	IS91 orf
1664	 43.71	-1	1841282..1842004	-	240	30063237	-	S1897	-	putative DNA-binding transcriptional regulator
1665	 52.52	0	1842145..1843275	-	376	30063238	yncB	S1898	-	putative oxidoreductase
1666	 55.30	0	1843312..1844217	-	301	161486478	-	S1899	-	insertion element IS2 transposase InsD
1667	 53.01	0	1844175..1844540	-	121	161486477	-	S1900	-	insertion sequence 2 OrfA protein
1668	 52.02	0	1844699..1845217	+	172	30063241	-	S1901	-	putative resistance protein
1669	 52.89	0	1845214..1845663	+	149	30063242	-	S1902	-	hypothetical protein
1670	 53.42	0	1845664..1845897	-	77	30063243	-	S1903	-	hypothetical protein
1671	 44.58	-1	1845983..1846231	-	82	30063244	-	S1904	-	hypothetical protein
1672	 53.19	0	1847867..1849291	-	474	30063245	-	S1905	-	gamma-aminobutyraldehyde dehydrogenase
1673	 54.34	0	1849313..1850107	-	264	30063246	-	S1906	-	putative transport system permease protein
1674	 55.12	0	1850946..1851560	+	204	30063247	-	S1908	-	IS1294 transposase
1675	 52.80	0	1851560..1852006	+	148	30063248	-	S1909	-	IS1294 transposase
1676	 50.24	0	1852484..1852690	-	68	30063249	-	S1910	-	IS629 orfB
1677	 56.67	+1	1852746..1853105	-	119	30063250	-	S1911	-	IS629 orfB
1678	 53.52	0	1853368..1853694	-	108	30063251	-	S1912	-	IS629 orfA
1679	 46.20	-1	1856431..1856772	-	113	30063252	-	S1915	-	hypothetical protein
1680	 50.40	0	1857661..1858035	-	124	30063253	-	S1917	-	hypothetical protein
1681	 48.48	0	1858174..1858404	+	76	30063254	holE	S1918	-	DNA polymerase III subunit theta
1682	 51.88	0	1858737..1859162	+	141	30063255	-	S1919	-	hypothetical protein
1683	 51.43	0	1859186..1859848	+	220	30063256	-	S1920	-	exodeoxyribonuclease X
1684	 49.93	0	1859845..1861905	-	686	30063257	ptrB	S1921	-	protease 2
1685	 52.58	0	1862115..1862774	-	219	30063258	yebE	S1922	-	hypothetical protein
1686	 50.42	0	1863101..1863457	-	118	30063259	yebF	S1923	-	hypothetical protein
1687	 53.69	0	1863948..1865126	+	392	30063260	purT	S1925	-	phosphoribosylglycinamide formyltransferase 2
1688	 56.07	+1	1865182..1865823	-	213	30063261	eda	S1926	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
1689	 53.59	0	1865860..1867671	-	603	30063262	edd	S1927	-	phosphogluconate dehydratase
1690	 51.42	0	1867906..1869381	-	491	30063263	zwf	S1928	-	glucose-6-phosphate 1-dehydrogenase
1691	 50.36	0	1869719..1870540	+	273	30063264	yebK	S1929	-	DNA-binding transcriptional regulator HexR
1692	 52.60	0	1870718..1872160	+	480	30063265	pykA	S1930	-	pyruvate kinase
1693	 51.34	0	1872291..1873262	-	323	30063266	msbB	S1931	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
1694	 52.15	0	1873382..1874704	-	440	30063267	yebA	S1932	-	hypothetical protein
1695	 49.20	0	1874720..1875652	-	310	161486476	znuA	S1933	-	high-affinity zinc transporter periplasmic component
1696	 48.81	0	1875731..1876486	+	251	30063269	znuC	S1934	-	high-affinity zinc transporter ATPase
1697	 51.02	0	1876483..1877268	+	261	30063270	znuB	S1935	-	high-affinity zinc transporter membrane component
1698	 52.32	0	1877415..1878425	-	336	30063271	ruvB	S1936	-	Holliday junction DNA helicase B
1699	 52.61	0	1878434..1879045	-	203	30063272	ruvA	S1937	-	Holliday junction DNA helicase motor protein
1700	 56.13	+1	1879923..1880444	-	173	30063273	ruvC	S1939	-	Holliday junction resolvase
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.