IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1550	 44.99	-1	1697675..1698721	+	348	30063123	-	S1762	-	putative transporter
1551	 50.31	0	1698900..1700201	+	433	30063124	rstB	S1763	-	sensor protein RstB
1552	 50.86	0	1700277..1701206	+	309	30063125	tus	S1764	-	DNA replication terminus site-binding protein
1553	 53.85	0	1701203..1702606	-	467	30063126	fumC	S1765	-	fumarate hydratase
1554	 50.52	0	1702749..1704395	-	548	30063127	fumA	S1766	-	fumarase A, fumarate hydratase class I; aerobic isozyme
1555	 50.77	0	1704594..1705769	+	391	30063128	manA	S1767	-	mannose-6-phosphate isomerase
1556	 48.71	0	1705870..1707345	+	491	30063129	ydgA	S1768	-	hypothetical protein
1557	 47.24	-1	1707605..1708870	-	421	161486483	uidC	S1769	-	membrane-associated protein
1558	 52.11	0	1709940..1711643	-	567	30063131	uidA	S1771	-	beta-D-glucuronidase
1559	 50.25	0	1712031..1712621	-	196	30063132	uidR	S1772	-	repressor for uid operon
1560	 52.58	0	1713026..1713529	-	167	30063133	-	S1774	-	IS1 orfB
1561	 52.90	0	1713448..1713723	-	91	30063134	-	S1775	-	IS1 orfA
1562	 54.42	0	1714506..1715534	-	342	30063135	malI	S1777	-	DNA-binding transcriptional repressor MalI
1563	 52.79	0	1715709..1717301	+	530	30063136	malX	S1778	-	bifunctional maltose and glucose-specific PTS system components IICB
1564	 51.24	0	1717311..1718483	+	390	30063137	malY	S1779	-	cystathionine beta-lyase; maltose regulon modulator
1565	 53.49	0	1718587..1719588	+	333	30063138	add	S1780	-	adenosine deaminase
1566	 53.89	0	1719624..1720664	-	346	161486482	-	S1781	-	putative oxidoreductase
1567	 47.22	-1	1721305..1721520	+	71	30063140	-	S1782	-	oriC-binding nucleoid-associated protein
1568	 48.75	0	1721606..1722046	+	146	30063141	-	S1783	-	hypothetical protein
1569	 51.37	0	1722123..1722704	+	193	30063142	-	S1784	-	Na(+)-translocating NADH-quinone reductase subunit E
1570	 54.40	0	1722704..1723282	+	192	30063143	-	S1785	-	electron transport complex protein RnfB
1571	 55.06	0	1723275..1725497	+	740	30063144	-	S1786	-	electron transport complex protein RnfC
1572	 53.07	0	1725498..1726556	+	352	30063145	rnfD	S1787	-	electron transport complex protein RnfD
1573	 52.66	0	1726560..1727180	+	206	30063146	-	S1788	-	electron transport complex protein RnfG
1574	 52.59	0	1727184..1727879	+	231	30063147	ydgQ	S1789	-	SoxR-reducing system protein RsxE
1575	 48.43	0	1727879..1728514	+	211	30063148	nth	S1790	-	endonuclease III
1576	 51.16	0	1729125..1730627	+	500	30063149	tppB	S1791	-	putative tripeptide transporter permease
1577	 50.50	0	1730733..1731338	+	201	30063150	gst	S1792	-	glutathionine S-transferase
1578	 52.66	0	1731382..1732245	-	287	30063151	pdxY	S1793	-	pyridoxamine kinase
1579	 51.76	0	1732304..1733578	-	424	30063152	tyrS	S1794	-	tyrosyl-tRNA synthetase
1580	 51.60	0	1733707..1734363	-	218	30063153	pdxH	S1795	-	pyridoxamine 5'-phosphate oxidase
1581	 46.99	-1	1734422..1734670	-	82	30063154	ydhA	S1796	-	hypothetical protein
1582	 55.30	0	1734692..1735597	-	301	161486481	-	S1797	-	insertion element IS2 transposase InsD
1583	 53.28	0	1735555..1735920	-	121	161486480	-	S1798	-	insertion sequence 2 OrfA protein
1584	 54.95	0	1736185..1737294	-	369	30063157	anmK	S1799	-	anhydro-N-acetylmuramic acid kinase
1585	 51.28	0	1737568..1738035	+	155	30063158	slyB	S1800	-	putative outer membrane protein
1586	 48.05	0	1738082..1738516	-	144	161486479	slyA	S1801	-	transcriptional regulator SlyA
1587	 48.52	0	1738717..1738953	+	78	30063160	-	S1802	-	hypothetical protein
1588	 49.83	0	1738947..1739813	+	288	30063161	-	S1803	-	hypothetical protein
1589	 53.07	0	1741826..1742362	-	178	30063162	sodC	S1805	-	superoxide dismutase
1590	 52.62	0	1742428..1743324	-	298	30063163	-	S1806	-	hypothetical protein
1591	 48.68	0	1743373..1743750	-	125	30063164	-	S1808	-	hypothetical protein
1592	 52.00	0	1743715..1744314	+	199	30063165	-	S1807	-	hypothetical protein
1593	 53.55	0	1744351..1745448	+	365	30063166	nemA	S1809	-	N-ethylmaleimide reductase
1594	 51.23	0	1745529..1745936	+	135	30063167	gloA	S1810	-	glyoxalase I
1595	 54.63	0	1746039..1746686	+	215	30063168	rnt	S1811	-	ribonuclease T
1596	 51.52	0	1751281..1752429	-	382	30063169	-	S1813	-	putative virulence protein
1597	 52.59	0	1753036..1753383	-	115	30063170	ydhD	S1814	-	hypothetical protein
1598	 47.95	0	1753718..1754545	+	275	30063171	ydhO	S1815	-	putative lipoprotein
1599	 49.83	0	1754673..1755254	+	193	30063172	sodB	S1816	-	superoxide dismutase
1600	 53.33	0	1755400..1756569	-	389	30063173	-	S1817	-	putative transport protein
1601	 53.70	0	1757123..1758148	+	341	30063174	purR	S1818	-	DNA-binding transcriptional repressor PurR
1602	 53.48	0	1758145..1759077	-	310	30063175	ydhB	S1819	-	putative DNA-binding transcriptional regulator
1603	 53.55	0	1759190..1760401	+	403	30063176	ydhC	S1820	-	inner membrane transport protein YdhC
1604	 48.22	0	1760692..1761840	+	382	30063177	cfa	S1821	-	cyclopropane fatty acyl phospholipid synthase
1605	 47.82	0	1761880..1762521	-	213	30063178	ribE	S1822	-	riboflavin synthase subunit alpha
1606	 52.98	0	1762736..1764109	+	457	30063179	ydhE	S1823	-	multidrug efflux protein
1607	 51.87	0	1764150..1765406	-	418	30063180	-	S1824	-	hypothetical protein
1608	 44.77	-1	1765979..1766284	+	101	30063181	-	S1827	-	hypothetical protein
1609	 52.89	0	1767844..1768656	-	270	30063182	-	S1829	-	hypothetical protein
1610	 49.36	0	1768660..1769445	-	261	30063183	ydhU	S1830	-	hypothetical protein
1611	 49.72	0	1769442..1770161	-	239	30063184	-	S1831	-	putative oxidoreductase, Fe-S subunit
1612	 52.43	0	1770174..1770812	-	212	30063185	-	S1832	-	hypothetical protein
1613	 49.12	0	1772947..1773573	-	208	30063186	-	S1834	-	hypothetical protein
1614	 46.67	-1	1774029..1774238	-	69	30063187	-	S1835	-	hypothetical protein
1615	 52.90	0	1774325..1774600	+	91	30063188	-	S1836	-	IS1 orfA
1616	 53.17	0	1774519..1775022	+	167	30063189	-	S1837	-	IS1 orfB
1617	 50.04	0	1775571..1776983	+	470	30063190	pykF	S1838	-	pyruvate kinase
1618	 50.63	0	1777294..1777530	+	78	30063191	lpp	S1839	-	murein lipoprotein
1619	 51.54	0	1777593..1778597	-	334	30063192	ynhG	S1840	-	hypothetical protein
1620	 49.64	0	1778746..1779162	-	138	30063193	ynhA	S1841	-	cysteine desufuration protein SufE
1621	 55.12	0	1779175..1780395	-	406	30063194	-	S1842	-	selenocysteine lyase
1622	 52.99	0	1780392..1781663	-	423	30063195	ynhC	S1843	-	cysteine desulfurase activator complex subunit SufD
1623	 50.20	0	1781638..1782384	-	248	30063196	sufC	S1844	-	cysteine desulfurase ATPase component
1624	 51.81	0	1782394..1783881	-	495	30063197	ynhE	S1845	-	cysteine desulfurase activator complex subunit SufB
1625	 52.85	0	1783890..1784258	-	122	30063198	sufA	S1846	-	iron-sulfur cluster assembly scaffold protein
1626	 44.44	-1	1784806..1785075	-	89	30063199	-	S1847	-	hypothetical protein
1627	 50.85	0	1785094..1785504	-	136	30063200	-	S1848	-	hypothetical protein
1628	 53.81	0	1785501..1788557	-	1018	30063201	ydiJ	S1849	-	putative oxidase
1629	 54.99	0	1788946..1790058	+	370	30063202	-	S1850	-	putative inner membrane protein
1630	 45.94	-1	1790487..1790843	+	118	30063203	-	S1851	-	hypothetical protein
1631	 44.68	-1	1791003..1792148	+	381	30063204	-	S1852	-	putative transport system permease protein
1632	 45.91	-1	1792442..1793602	+	386	30063205	-	S1853	-	putative amino acid/amine transport protein
1633	 47.75	0	1793614..1794480	+	288	30063206	aroE	S1854	-	quinate/shikimate dehydrogenase
1634	 50.99	0	1794511..1795269	+	252	30063207	aroD	S1855	-	3-dehydroquinate dehydratase
1635	 52.58	0	1795351..1795854	-	167	30063208	-	S1857	-	IS1 orfB
1636	 52.54	0	1795773..1796048	-	91	30063209	-	S1856	-	IS1 orfA
1637	 38.17	-2	1797701..1798858	+	385	30063210	-	S1859	-	putative enzyme
1638	 45.66	-1	1800872..1803232	+	786	30063211	yddB	S1861	-	hypothetical protein
1639	 52.78	0	1803502..1804005	-	167	30063212	-	S1862	-	IS1 orfB
1640	 52.90	0	1803924..1804199	-	91	30063213	-	S1863	-	IS1 orfA
1641	 52.90	0	1806810..1807085	+	91	30063214	-	S1865	-	IS1 orfA
1642	 53.37	0	1807004..1807507	+	167	30063215	-	S1866	-	IS1 orfB
1643	 53.89	0	1807985..1809385	+	466	30063216	gadB	S1867	-	glutamate decarboxylase isozyme
1644	 48.31	0	1809541..1811076	+	511	30063217	xasA	S1868	-	acid sensitivity protein, putative transporter
1645	 51.82	0	1811207..1812526	+	439	30063218	-	S1869	-	hypothetical protein
1646	 53.51	0	1815194..1816090	+	298	30063219	-	S1873	-	ATP-dependent peptide transporter membrane subunit
1647	 54.10	0	1816087..1817073	+	328	30063220	-	S1874	-	putative ATP-binding component of a transport system
1648	 50.23	0	1818048..1818479	-	143	30063221	osmC	S1876	-	osmotically inducible protein
1649	 52.78	0	1818652..1819155	-	167	30063222	-	S1877	-	IS1 orfB
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.