IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1437	 54.19	0	1577877..1578806	-	309	30063010	pfkB	S1624	-	6-phosphofructokinase 2
1438	 49.86	0	1579126..1579851	+	241	30063011	-	S1625	-	hypothetical protein
1439	 52.98	0	1581158..1581661	-	167	30063012	-	S1627	-	IS1 orfB
1440	 52.54	0	1581580..1581855	-	91	30063013	-	S1628	-	IS1 orfA
1441	 49.82	0	1582814..1584742	+	642	30063014	thrS	S1630	-	threonyl-tRNA synthetase
1442	 47.36	-1	1584854..1585288	+	144	30063015	infC	S1631	-	translation initiation factor IF-3
1443	 49.49	0	1585385..1585582	+	65	30063016	rpmI	S1632	-	50S ribosomal protein L35
1444	 48.18	0	1585635..1585991	+	118	30063017	rplT	S1633	-	50S ribosomal protein L20
1445	 35.56	-2	1586114..1586158	+	14	30063018	pheM	S4806	-	phenylalanyl-tRNA synthetase (pheST) operon leader peptide
1446	 53.96	0	1586441..1587424	+	327	30063019	pheS	S1634	-	phenylalanyl-tRNA synthetase subunit alpha
1447	 53.98	0	1587439..1589826	+	795	30063020	pheT	S1635	-	phenylalanyl-tRNA synthetase subunit beta
1448	 50.00	0	1589831..1590130	+	99	30063021	ihfA	S1636	-	integration host factor subunit alpha
1449	 55.25	0	1590231..1591211	+	326	30063022	btuC	S1637	-	vtamin B12-transporter permease
1450	 49.28	0	1591274..1591825	+	183	30063023	btuE	S1638	-	putative glutathione peroxidase
1451	 55.07	0	1591825..1592574	+	249	30063024	btuD	S1639	-	vitamin B12-transporter ATPase
1452	 49.03	0	1592652..1593116	+	154	30063025	nlpC	S1640	-	lipoprotein
1453	 42.58	-2	1593363..1594076	+	237	30063026	-	S1641	-	hypothetical protein
1454	 52.12	0	1594140..1595576	+	478	30063027	-	S1642	-	hypothetical protein
1455	 50.52	0	1595580..1595771	-	63	30063028	ydiE	S1643	-	hypothetical protein
1456	 52.91	0	1595903..1596949	-	348	30063029	aroH	S1644	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1457	 51.08	0	1597106..1597939	-	277	30063030	ydiA	S1645	-	hypothetical protein
1458	 54.90	0	1598272..1600650	+	792	30063031	ppsA	S1646	-	phosphoenolpyruvate synthase
1459	 49.68	0	1600707..1602407	-	566	30063032	ydiD	S1647	-	short chain acyl-CoA synthetase
1460	 47.96	0	1602410..1602703	-	97	30063033	ydiT	S1648	-	hypothetical protein
1461	 54.50	0	1602700..1603989	-	429	30063034	ydiS	S1649	-	hypothetical protein
1462	 53.14	0	1604045..1604983	-	312	30063035	ydiR	S1650	-	electron transfer flavoprotein subunit YdiR
1463	 51.50	0	1605003..1605767	-	254	30063036	ydiQ	S1651	-	putative electron transfer flavoprotein YdiQ
1464	 46.11	-1	1606086..1606586	+	166	30063037	-	S1652	-	putative ARAC-type regulatory protein
1465	 51.70	0	1607022..1607315	+	97	30063038	-	S1653	-	IS1
1466	 39.50	-2	1607878..1608639	-	253	30063039	-	S1654	-	transcriptional regulator YdeO
1467	 35.29	-2	1608707..1608910	-	67	30063040	-	S1655	-	hypothetical protein
1468	 50.18	0	1609158..1611437	-	759	30063041	-	S1656	-	putative oxidoreductase
1469	 52.90	0	1612576..1612851	+	91	30063042	-	S1658	-	IS1 orfA
1470	 52.58	0	1612770..1613273	+	167	30063043	-	S1659	-	IS1 orfB
1471	 52.24	0	1613481..1614194	+	237	30063044	-	S1660	-	IS600 orfB
1472	 55.00	0	1614219..1614398	-	59	30063045	-	S1661	-	putative lysis protein S of prophage CP-933V
1473	 52.94	0	1614706..1614909	-	67	30063046	-	S4818	-	hypothetical protein
1474	 52.38	0	1617635..1617991	-	118	30063047	rus	S1665	-	endodeoxyribonuclease RUS (Holliday junction resolvase)
1475	 39.76	-2	1619400..1619648	-	82	30063048	rem	S1667	-	hypothetical protein
1476	 51.92	0	1619869..1620024	-	51	30063049	relF	S1668	-	prophage maintenance protein
1477	 46.88	-1	1620096..1620383	-	95	30063050	relE	S1669	-	hypothetical protein
1478	 47.08	-1	1620383..1620622	-	79	30063051	relB	S1670	-	bifunctional antitoxin/transcriptional repressor RelB
1479	 53.43	0	1620682..1621308	-	208	30063052	b4285	S1671	-	IS911 orfB
1480	 44.88	-1	1621548..1621850	-	100	30063053	-	S1673	-	IS911 orfA
1481	 52.10	0	1622201..1622914	-	237	30063054	-	S1675	-	IS600 orfB
1482	 46.20	-1	1623055..1623357	-	100	30063055	-	S1676	-	IS600 orfA
1483	 50.03	0	1624527..1625987	+	486	30063056	ydfI	S1678	-	putative oxidoreductase
1484	 51.96	0	1626023..1626226	-	67	30063057	-	S1679	-	hypothetical protein
1485	 50.22	0	1626404..1627090	-	228	30063058	ydfH	S1680	-	hypothetical protein
1486	 51.27	0	1627179..1627925	-	248	30063059	ydfG	S1681	-	3-hydroxy acid dehydrogenase
1487	 50.00	0	1628062..1630107	+	681	30063060	dcp	S1682	-	dipeptidyl carboxypeptidase II
1488	 49.90	0	1630152..1630670	-	172	30063061	ydeJ	S1683	-	competence damage-inducible protein A
1489	 45.73	-1	1630946..1631179	+	77	30063062	ydeI	S1684	-	hypothetical protein
1490	 46.20	-1	1631236..1631538	+	100	30063063	-	S1685	-	IS600
1491	 52.24	0	1631679..1632392	+	237	30063064	-	S1686	-	IS600
1492	 49.51	0	1632862..1633980	-	372	30063065	ydeF	S1687	-	putative transport protein
1493	 50.00	0	1634244..1635143	+	299	161486492	ydeD	S1688	-	O-acetylserine/cysteine export protein
1494	 49.32	0	1635174..1635392	-	72	30063067	marB	S1689	-	hypothetical protein
1495	 45.83	-1	1635424..1635807	-	127	30063068	marA	S1690	-	DNA-binding transcriptional activator MarA
1496	 48.51	0	1635827..1636261	-	144	161486491	marR	S1691	-	DNA-binding transcriptional repressor MarR
1497	 51.05	0	1636473..1637138	+	221	30063070	ydeB	S1692	-	multiple drug resistance protein MarC
1498	 51.30	0	1637163..1638353	-	396	30063071	ydeA	S1693	-	sugar efflux transporter
1499	 40.14	-2	1638503..1639618	-	371	30063072	-	S1694	-	hypothetical protein
1500	 51.78	0	1640697..1641623	+	308	30063073	yneH	S1696	-	glutaminase
1501	 53.04	0	1641623..1641967	+	114	30063074	-	S1697	-	hypothetical protein
1502	 50.42	0	1642592..1643539	+	315	30063075	-	S1698	-	hypothetical protein
1503	 52.13	0	1643766..1645217	+	483	30063076	uxaB	S1699	-	altronate oxidoreductase
1504	 47.72	0	1647060..1648025	+	321	30063077	-	S1701	-	hypothetical protein
1505	 54.68	0	1648029..1648787	-	252	30063078	-	S1702	-	trans-aconitate 2-methyltransferase
1506	 45.02	-1	1648827..1649117	-	96	30063079	-	S1703	-	autoinducer-2 (AI-2) modifying protein LsrG
1507	 50.57	0	1649141..1649923	-	260	30063080	-	S1704	-	aldolase
1508	 55.30	0	1649936..1650841	-	301	161486490	-	S1705	-	insertion element IS2 transposase InsD
1509	 53.01	0	1650799..1651164	-	121	161486489	-	S1706	-	insertion sequence 2 OrfA protein
1510	 51.15	0	1652321..1653274	-	317	30063083	ydeW	S1708	-	sorC family transcriptional regulator
1511	 53.19	0	1653523..1655058	+	511	30063084	-	S1709	-	putative ATP-binding component of a transport system
1512	 53.84	0	1655052..1656080	+	342	30063085	ydeY	S1710	-	putative transport system permease protein
1513	 53.58	0	1656080..1657072	+	330	30063086	ydeZ	S1711	-	putative transport system permease protein
1514	 53.01	0	1658322..1658687	+	121	161486488	-	S1714	-	insertion sequence 2 OrfA protein
1515	 55.30	0	1658645..1659550	+	301	161486487	-	S1715	-	insertion element IS2 transposase InsD
1516	 50.55	0	1659600..1660412	-	270	30063089	-	S1716	-	ISEhe3 orfB
1517	 49.10	0	1660469..1660747	-	92	30063090	-	S1717	-	ISEhe3 orfA
1518	 50.78	0	1660824..1662038	-	404	30063091	rspA	S1718	-	starvation sensing protein
1519	 50.76	0	1662244..1662570	-	108	30063092	-	S1719	-	hypothetical protein
1520	 51.17	0	1662705..1663046	+	113	30063093	-	S1720	-	hypothetical protein
1521	 43.74	-1	1663644..1664354	-	236	161486486	ynfC	S1722	-	hypothetical protein
1522	 55.56	0	1664462..1664767	+	101	30063095	-	S1723	-	hypothetical protein
1523	 53.03	0	1667110..1668099	-	329	30063096	-	S1727	-	hypothetical protein
1524	 54.67	0	1668186..1668677	-	163	30063097	-	S1728	-	hypothetical protein
1525	 52.30	0	1668998..1669498	-	166	30063098	-	S1730	-	hypothetical protein
1526	 51.36	0	1669488..1670003	-	171	30063099	-	S1731	-	hypothetical protein
1527	 53.66	0	1670434..1670802	-	122	30063100	-	S1732	-	hypothetical protein
1528	 53.75	0	1671771..1672397	-	208	30063101	-	S1736	-	IS911 orfB
1529	 44.88	-1	1672637..1672939	-	100	30063102	-	S1738	-	IS911 orfA
1530	 52.60	0	1673009..1673797	-	262	30063103	-	S1739	-	putative integrase
1531	 52.75	0	1677248..1677865	+	205	30063104	-	S1742	-	putative oxidoreductase, Fe-S subunit
1532	 52.28	0	1677867..1678721	+	284	30063105	-	S1743	-	putative DMSO reductase anchor subunit
1533	 53.33	0	1678764..1679378	+	204	30063106	-	S1744	-	twin-argninine leader-binding protein DmsD
1534	 54.18	0	1679573..1680829	+	418	161486485	-	S1745	-	putative voltage-gated ClC-type chloride channel ClcB
1535	 52.01	0	1680782..1681477	-	231	30063108	bioD	S1746	-	putative dithiobiotin synthetase
1536	 52.25	0	1681602..1682822	-	406	30063109	mlc	S1747	-	putative NAGC-like transcriptional regulator
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.