IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1415	 58.15	+1	1554103..1555581	+	492	30062988	astD	S1597	-	succinylglutamic semialdehyde dehydrogenase
1416	 53.46	0	1556904..1557872	+	322	30062989	ydjS	S1599	-	succinylglutamate desuccinylase
1417	 50.82	0	1558202..1558687	+	161	30062990	spy	S1600	-	periplasmic protein
1418	 51.74	0	1558890..1559465	+	191	30062991	-	S1601	-	hypothetical protein
1419	 51.13	0	1559425..1560312	-	295	30062992	-	S1602	-	nucleotide excision repair endonuclease
1420	 48.79	0	1560542..1561369	-	275	30062993	nadE	S1603	-	NAD synthetase
1421	 49.26	0	1561571..1561909	+	112	30062994	osmE	S1604	-	DNA-binding transcriptional activator OsmE
1422	 43.61	-1	1562208..1562528	+	106	30062995	celA	S1605	-	N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB
1423	 48.15	0	1564020..1564370	+	116	30062996	celC	S1607	-	N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA
1424	 52.98	0	1565070..1565573	-	167	30062997	-	S1609	-	IS1 orfB
1425	 52.90	0	1565492..1565767	-	91	30062998	-	S1610	-	IS1 orfA
1426	 46.56	-1	1566102..1567454	+	450	30062999	celF	S1611	-	cryptic phospho-beta-glucosidase; cryptic
1427	 50.33	0	1567467..1568225	+	252	30063000	ydjC	S1612	-	hypothetical protein
1428	 51.55	0	1568272..1570533	-	753	30063001	katE	S1613	-	hydroperoxidase II
1429	 51.52	0	1570716..1570979	+	87	30063002	-	S1614	-	cell division modulator
1430	 53.17	0	1572008..1572511	-	167	30063003	-	S1616	-	IS1 orfB
1431	 52.90	0	1572430..1572705	-	91	30063004	-	S1617	-	IS1 orfA
1432	 51.27	0	1574375..1574965	-	196	30063005	-	S1619	-	hypothetical protein
1433	 51.42	0	1575128..1575796	-	222	30063006	yniC	S1620	-	2-deoxyglucose-6-phosphatase
1434	 43.95	-1	1575943..1576479	+	178	30063007	-	S1621	-	hypothetical protein
1435	 51.92	0	1576520..1577380	-	286	30063008	-	S1622	-	hypothetical protein
1436	 43.64	-1	1577486..1577776	-	96	30063009	-	S1623	-	hypothetical protein
1437	 54.19	0	1577877..1578806	-	309	30063010	pfkB	S1624	-	6-phosphofructokinase 2
1438	 49.86	0	1579126..1579851	+	241	30063011	-	S1625	-	hypothetical protein
1439	 52.98	0	1581158..1581661	-	167	30063012	-	S1627	-	IS1 orfB
1440	 52.54	0	1581580..1581855	-	91	30063013	-	S1628	-	IS1 orfA
1441	 49.82	0	1582814..1584742	+	642	30063014	thrS	S1630	-	threonyl-tRNA synthetase
1442	 47.36	-1	1584854..1585288	+	144	30063015	infC	S1631	-	translation initiation factor IF-3
1443	 49.49	0	1585385..1585582	+	65	30063016	rpmI	S1632	-	50S ribosomal protein L35
1444	 48.18	0	1585635..1585991	+	118	30063017	rplT	S1633	-	50S ribosomal protein L20
1445	 35.56	-2	1586114..1586158	+	14	30063018	pheM	S4806	-	phenylalanyl-tRNA synthetase (pheST) operon leader peptide
1446	 53.96	0	1586441..1587424	+	327	30063019	pheS	S1634	-	phenylalanyl-tRNA synthetase subunit alpha
1447	 53.98	0	1587439..1589826	+	795	30063020	pheT	S1635	-	phenylalanyl-tRNA synthetase subunit beta
1448	 50.00	0	1589831..1590130	+	99	30063021	ihfA	S1636	-	integration host factor subunit alpha
1449	 55.25	0	1590231..1591211	+	326	30063022	btuC	S1637	-	vtamin B12-transporter permease
1450	 49.28	0	1591274..1591825	+	183	30063023	btuE	S1638	-	putative glutathione peroxidase
1451	 55.07	0	1591825..1592574	+	249	30063024	btuD	S1639	-	vitamin B12-transporter ATPase
1452	 49.03	0	1592652..1593116	+	154	30063025	nlpC	S1640	-	lipoprotein
1453	 42.58	-2	1593363..1594076	+	237	30063026	-	S1641	-	hypothetical protein
1454	 52.12	0	1594140..1595576	+	478	30063027	-	S1642	-	hypothetical protein
1455	 50.52	0	1595580..1595771	-	63	30063028	ydiE	S1643	-	hypothetical protein
1456	 52.91	0	1595903..1596949	-	348	30063029	aroH	S1644	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1457	 51.08	0	1597106..1597939	-	277	30063030	ydiA	S1645	-	hypothetical protein
1458	 54.90	0	1598272..1600650	+	792	30063031	ppsA	S1646	-	phosphoenolpyruvate synthase
1459	 49.68	0	1600707..1602407	-	566	30063032	ydiD	S1647	-	short chain acyl-CoA synthetase
1460	 47.96	0	1602410..1602703	-	97	30063033	ydiT	S1648	-	hypothetical protein
1461	 54.50	0	1602700..1603989	-	429	30063034	ydiS	S1649	-	hypothetical protein
1462	 53.14	0	1604045..1604983	-	312	30063035	ydiR	S1650	-	electron transfer flavoprotein subunit YdiR
1463	 51.50	0	1605003..1605767	-	254	30063036	ydiQ	S1651	-	putative electron transfer flavoprotein YdiQ
1464	 46.11	-1	1606086..1606586	+	166	30063037	-	S1652	-	putative ARAC-type regulatory protein
1465	 51.70	0	1607022..1607315	+	97	30063038	-	S1653	-	IS1
1466	 39.50	-2	1607878..1608639	-	253	30063039	-	S1654	-	transcriptional regulator YdeO
1467	 35.29	-2	1608707..1608910	-	67	30063040	-	S1655	-	hypothetical protein
1468	 50.18	0	1609158..1611437	-	759	30063041	-	S1656	-	putative oxidoreductase
1469	 52.90	0	1612576..1612851	+	91	30063042	-	S1658	-	IS1 orfA
1470	 52.58	0	1612770..1613273	+	167	30063043	-	S1659	-	IS1 orfB
1471	 52.24	0	1613481..1614194	+	237	30063044	-	S1660	-	IS600 orfB
1472	 55.00	0	1614219..1614398	-	59	30063045	-	S1661	-	putative lysis protein S of prophage CP-933V
1473	 52.94	0	1614706..1614909	-	67	30063046	-	S4818	-	hypothetical protein
1474	 52.38	0	1617635..1617991	-	118	30063047	rus	S1665	-	endodeoxyribonuclease RUS (Holliday junction resolvase)
1475	 39.76	-2	1619400..1619648	-	82	30063048	rem	S1667	-	hypothetical protein
1476	 51.92	0	1619869..1620024	-	51	30063049	relF	S1668	-	prophage maintenance protein
1477	 46.88	-1	1620096..1620383	-	95	30063050	relE	S1669	-	hypothetical protein
1478	 47.08	-1	1620383..1620622	-	79	30063051	relB	S1670	-	bifunctional antitoxin/transcriptional repressor RelB
1479	 53.43	0	1620682..1621308	-	208	30063052	b4285	S1671	-	IS911 orfB
1480	 44.88	-1	1621548..1621850	-	100	30063053	-	S1673	-	IS911 orfA
1481	 52.10	0	1622201..1622914	-	237	30063054	-	S1675	-	IS600 orfB
1482	 46.20	-1	1623055..1623357	-	100	30063055	-	S1676	-	IS600 orfA
1483	 50.03	0	1624527..1625987	+	486	30063056	ydfI	S1678	-	putative oxidoreductase
1484	 51.96	0	1626023..1626226	-	67	30063057	-	S1679	-	hypothetical protein
1485	 50.22	0	1626404..1627090	-	228	30063058	ydfH	S1680	-	hypothetical protein
1486	 51.27	0	1627179..1627925	-	248	30063059	ydfG	S1681	-	3-hydroxy acid dehydrogenase
1487	 50.00	0	1628062..1630107	+	681	30063060	dcp	S1682	-	dipeptidyl carboxypeptidase II
1488	 49.90	0	1630152..1630670	-	172	30063061	ydeJ	S1683	-	competence damage-inducible protein A
1489	 45.73	-1	1630946..1631179	+	77	30063062	ydeI	S1684	-	hypothetical protein
1490	 46.20	-1	1631236..1631538	+	100	30063063	-	S1685	-	IS600
1491	 52.24	0	1631679..1632392	+	237	30063064	-	S1686	-	IS600
1492	 49.51	0	1632862..1633980	-	372	30063065	ydeF	S1687	-	putative transport protein
1493	 50.00	0	1634244..1635143	+	299	161486492	ydeD	S1688	-	O-acetylserine/cysteine export protein
1494	 49.32	0	1635174..1635392	-	72	30063067	marB	S1689	-	hypothetical protein
1495	 45.83	-1	1635424..1635807	-	127	30063068	marA	S1690	-	DNA-binding transcriptional activator MarA
1496	 48.51	0	1635827..1636261	-	144	161486491	marR	S1691	-	DNA-binding transcriptional repressor MarR
1497	 51.05	0	1636473..1637138	+	221	30063070	ydeB	S1692	-	multiple drug resistance protein MarC
1498	 51.30	0	1637163..1638353	-	396	30063071	ydeA	S1693	-	sugar efflux transporter
1499	 40.14	-2	1638503..1639618	-	371	30063072	-	S1694	-	hypothetical protein
1500	 51.78	0	1640697..1641623	+	308	30063073	yneH	S1696	-	glutaminase
1501	 53.04	0	1641623..1641967	+	114	30063074	-	S1697	-	hypothetical protein
1502	 50.42	0	1642592..1643539	+	315	30063075	-	S1698	-	hypothetical protein
1503	 52.13	0	1643766..1645217	+	483	30063076	uxaB	S1699	-	altronate oxidoreductase
1504	 47.72	0	1647060..1648025	+	321	30063077	-	S1701	-	hypothetical protein
1505	 54.68	0	1648029..1648787	-	252	30063078	-	S1702	-	trans-aconitate 2-methyltransferase
1506	 45.02	-1	1648827..1649117	-	96	30063079	-	S1703	-	autoinducer-2 (AI-2) modifying protein LsrG
1507	 50.57	0	1649141..1649923	-	260	30063080	-	S1704	-	aldolase
1508	 55.30	0	1649936..1650841	-	301	161486490	-	S1705	-	insertion element IS2 transposase InsD
1509	 53.01	0	1650799..1651164	-	121	161486489	-	S1706	-	insertion sequence 2 OrfA protein
1510	 51.15	0	1652321..1653274	-	317	30063083	ydeW	S1708	-	sorC family transcriptional regulator
1511	 53.19	0	1653523..1655058	+	511	30063084	-	S1709	-	putative ATP-binding component of a transport system
1512	 53.84	0	1655052..1656080	+	342	30063085	ydeY	S1710	-	putative transport system permease protein
1513	 53.58	0	1656080..1657072	+	330	30063086	ydeZ	S1711	-	putative transport system permease protein
1514	 53.01	0	1658322..1658687	+	121	161486488	-	S1714	-	insertion sequence 2 OrfA protein
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.