IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1382	 50.36	0	1512927..1514306	-	459	30062955	yeaG	S1555	-	hypothetical protein
1383	 52.07	0	1514742..1515488	+	248	30062956	yeaF	S1556	-	hypothetical protein
1384	 50.39	0	1515578..1516339	+	253	30062957	-	S1557	-	putative aldehyde reductase
1385	 50.73	0	1516390..1517274	-	294	30062958	yeaD	S1558	-	hypothetical protein
1386	 50.20	0	1517358..1518353	-	331	30062959	gapA	S1559	-	glyceraldehyde-3-phosphate dehydrogenase
1387	 47.83	0	1518695..1519108	+	137	30062960	yeaA	S1560	-	methionine sulfoxide reductase B
1388	 45.42	-1	1519150..1519422	+	90	30062961	-	S1561	-	hypothetical protein
1389	 49.86	0	1519792..1520868	+	358	30062962	-	S1562	-	putative oxidoreductase
1390	 49.06	0	1520895..1522274	+	459	30062963	-	S1563	-	putative transport protein
1391	 44.56	-1	1523357..1524193	+	278	30062964	-	S1565	-	putative aldolase
1392	 45.04	-1	1524198..1525145	+	315	30062965	-	S1566	-	putative kinase
1393	 47.76	0	1525200..1526135	+	311	30062966	-	S1567	-	hypothetical protein
1394	 42.42	-2	1526272..1527030	+	252	30062967	-	S1568	-	putative DEOR-type transcriptional regulator
1395	 45.25	-1	1527148..1528506	+	452	30062968	ydjE	S1569	-	putative transport protein
1396	 53.43	0	1528599..1529240	-	213	161486495	ydjB	S1570	-	nicotinamidase/pyrazinamidase
1397	 50.84	0	1529251..1530267	-	338	30062970	ansA	S1571	-	cytoplasmic asparaginase I
1398	 51.97	0	1530434..1532290	-	618	30062971	sppA	S1572	-	protease 4
1399	 55.25	0	1532451..1533002	+	183	30062972	ydjA	S1573	-	hypothetical protein
1400	 55.27	0	1533119..1534162	+	347	30062973	selD	S1574	-	selenophosphate synthetase
1401	 55.35	0	1534167..1536128	+	653	30062974	topB	S1575	-	DNA topoisomerase III
1402	 53.28	0	1538704..1539069	+	121	161486494	-	S1578	-	insertion sequence 2 OrfA protein
1403	 55.30	0	1539027..1539932	+	301	161486493	-	S1579	-	insertion element IS2 transposase InsD
1404	 50.55	0	1540327..1540599	+	90	30062977	-	S1580	-	hypothetical protein
1405	 53.92	0	1540565..1540972	-	135	30062978	-	S1581	-	pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase
1406	 53.62	0	1541059..1541679	+	206	30062979	-	S1582	-	putative cytochrome oxidase
1407	 51.68	0	1543062..1543715	-	217	30062980	-	S1584	-	putative ATP-binding component of a transport system
1408	 54.33	0	1546096..1547424	+	442	30062981	-	S1588	-	IS4 orf
1409	 56.65	+1	1547774..1548322	-	182	30062982	ynjA	S1590	-	hypothetical protein
1410	 51.35	0	1548322..1549026	-	234	30062983	ydjZ	S1591	-	hypothetical protein
1411	 49.52	0	1549044..1549883	-	279	30062984	ydjY	S1592	-	hypothetical protein
1412	 48.52	0	1549726..1550436	-	236	30062985	ydjX	S1593	-	hypothetical protein
1413	 53.28	0	1550603..1551409	-	268	30062986	xthA	S1594	-	exonuclease III
1414	 56.20	+1	1553075..1554106	+	343	30062987	-	S1596	-	arginine succinyltransferase
1415	 58.15	+1	1554103..1555581	+	492	30062988	astD	S1597	-	succinylglutamic semialdehyde dehydrogenase
1416	 53.46	0	1556904..1557872	+	322	30062989	ydjS	S1599	-	succinylglutamate desuccinylase
1417	 50.82	0	1558202..1558687	+	161	30062990	spy	S1600	-	periplasmic protein
1418	 51.74	0	1558890..1559465	+	191	30062991	-	S1601	-	hypothetical protein
1419	 51.13	0	1559425..1560312	-	295	30062992	-	S1602	-	nucleotide excision repair endonuclease
1420	 48.79	0	1560542..1561369	-	275	30062993	nadE	S1603	-	NAD synthetase
1421	 49.26	0	1561571..1561909	+	112	30062994	osmE	S1604	-	DNA-binding transcriptional activator OsmE
1422	 43.61	-1	1562208..1562528	+	106	30062995	celA	S1605	-	N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB
1423	 48.15	0	1564020..1564370	+	116	30062996	celC	S1607	-	N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA
1424	 52.98	0	1565070..1565573	-	167	30062997	-	S1609	-	IS1 orfB
1425	 52.90	0	1565492..1565767	-	91	30062998	-	S1610	-	IS1 orfA
1426	 46.56	-1	1566102..1567454	+	450	30062999	celF	S1611	-	cryptic phospho-beta-glucosidase; cryptic
1427	 50.33	0	1567467..1568225	+	252	30063000	ydjC	S1612	-	hypothetical protein
1428	 51.55	0	1568272..1570533	-	753	30063001	katE	S1613	-	hydroperoxidase II
1429	 51.52	0	1570716..1570979	+	87	30063002	-	S1614	-	cell division modulator
1430	 53.17	0	1572008..1572511	-	167	30063003	-	S1616	-	IS1 orfB
1431	 52.90	0	1572430..1572705	-	91	30063004	-	S1617	-	IS1 orfA
1432	 51.27	0	1574375..1574965	-	196	30063005	-	S1619	-	hypothetical protein
1433	 51.42	0	1575128..1575796	-	222	30063006	yniC	S1620	-	2-deoxyglucose-6-phosphatase
1434	 43.95	-1	1575943..1576479	+	178	30063007	-	S1621	-	hypothetical protein
1435	 51.92	0	1576520..1577380	-	286	30063008	-	S1622	-	hypothetical protein
1436	 43.64	-1	1577486..1577776	-	96	30063009	-	S1623	-	hypothetical protein
1437	 54.19	0	1577877..1578806	-	309	30063010	pfkB	S1624	-	6-phosphofructokinase 2
1438	 49.86	0	1579126..1579851	+	241	30063011	-	S1625	-	hypothetical protein
1439	 52.98	0	1581158..1581661	-	167	30063012	-	S1627	-	IS1 orfB
1440	 52.54	0	1581580..1581855	-	91	30063013	-	S1628	-	IS1 orfA
1441	 49.82	0	1582814..1584742	+	642	30063014	thrS	S1630	-	threonyl-tRNA synthetase
1442	 47.36	-1	1584854..1585288	+	144	30063015	infC	S1631	-	translation initiation factor IF-3
1443	 49.49	0	1585385..1585582	+	65	30063016	rpmI	S1632	-	50S ribosomal protein L35
1444	 48.18	0	1585635..1585991	+	118	30063017	rplT	S1633	-	50S ribosomal protein L20
1445	 35.56	-2	1586114..1586158	+	14	30063018	pheM	S4806	-	phenylalanyl-tRNA synthetase (pheST) operon leader peptide
1446	 53.96	0	1586441..1587424	+	327	30063019	pheS	S1634	-	phenylalanyl-tRNA synthetase subunit alpha
1447	 53.98	0	1587439..1589826	+	795	30063020	pheT	S1635	-	phenylalanyl-tRNA synthetase subunit beta
1448	 50.00	0	1589831..1590130	+	99	30063021	ihfA	S1636	-	integration host factor subunit alpha
1449	 55.25	0	1590231..1591211	+	326	30063022	btuC	S1637	-	vtamin B12-transporter permease
1450	 49.28	0	1591274..1591825	+	183	30063023	btuE	S1638	-	putative glutathione peroxidase
1451	 55.07	0	1591825..1592574	+	249	30063024	btuD	S1639	-	vitamin B12-transporter ATPase
1452	 49.03	0	1592652..1593116	+	154	30063025	nlpC	S1640	-	lipoprotein
1453	 42.58	-2	1593363..1594076	+	237	30063026	-	S1641	-	hypothetical protein
1454	 52.12	0	1594140..1595576	+	478	30063027	-	S1642	-	hypothetical protein
1455	 50.52	0	1595580..1595771	-	63	30063028	ydiE	S1643	-	hypothetical protein
1456	 52.91	0	1595903..1596949	-	348	30063029	aroH	S1644	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1457	 51.08	0	1597106..1597939	-	277	30063030	ydiA	S1645	-	hypothetical protein
1458	 54.90	0	1598272..1600650	+	792	30063031	ppsA	S1646	-	phosphoenolpyruvate synthase
1459	 49.68	0	1600707..1602407	-	566	30063032	ydiD	S1647	-	short chain acyl-CoA synthetase
1460	 47.96	0	1602410..1602703	-	97	30063033	ydiT	S1648	-	hypothetical protein
1461	 54.50	0	1602700..1603989	-	429	30063034	ydiS	S1649	-	hypothetical protein
1462	 53.14	0	1604045..1604983	-	312	30063035	ydiR	S1650	-	electron transfer flavoprotein subunit YdiR
1463	 51.50	0	1605003..1605767	-	254	30063036	ydiQ	S1651	-	putative electron transfer flavoprotein YdiQ
1464	 46.11	-1	1606086..1606586	+	166	30063037	-	S1652	-	putative ARAC-type regulatory protein
1465	 51.70	0	1607022..1607315	+	97	30063038	-	S1653	-	IS1
1466	 39.50	-2	1607878..1608639	-	253	30063039	-	S1654	-	transcriptional regulator YdeO
1467	 35.29	-2	1608707..1608910	-	67	30063040	-	S1655	-	hypothetical protein
1468	 50.18	0	1609158..1611437	-	759	30063041	-	S1656	-	putative oxidoreductase
1469	 52.90	0	1612576..1612851	+	91	30063042	-	S1658	-	IS1 orfA
1470	 52.58	0	1612770..1613273	+	167	30063043	-	S1659	-	IS1 orfB
1471	 52.24	0	1613481..1614194	+	237	30063044	-	S1660	-	IS600 orfB
1472	 55.00	0	1614219..1614398	-	59	30063045	-	S1661	-	putative lysis protein S of prophage CP-933V
1473	 52.94	0	1614706..1614909	-	67	30063046	-	S4818	-	hypothetical protein
1474	 52.38	0	1617635..1617991	-	118	30063047	rus	S1665	-	endodeoxyribonuclease RUS (Holliday junction resolvase)
1475	 39.76	-2	1619400..1619648	-	82	30063048	rem	S1667	-	hypothetical protein
1476	 51.92	0	1619869..1620024	-	51	30063049	relF	S1668	-	prophage maintenance protein
1477	 46.88	-1	1620096..1620383	-	95	30063050	relE	S1669	-	hypothetical protein
1478	 47.08	-1	1620383..1620622	-	79	30063051	relB	S1670	-	bifunctional antitoxin/transcriptional repressor RelB
1479	 53.43	0	1620682..1621308	-	208	30063052	b4285	S1671	-	IS911 orfB
1480	 44.88	-1	1621548..1621850	-	100	30063053	-	S1673	-	IS911 orfA
1481	 52.10	0	1622201..1622914	-	237	30063054	-	S1675	-	IS600 orfB
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.