IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
991	 41.47	-2	1081598..1082248	-	216	30062564	csgD	S1107	-	DNA-binding transcriptional regulator CsgD
992	 42.11	-2	1083002..1083457	+	151	30062565	csgB	S1108	-	curlin minor subunit
993	 46.20	-1	1083671..1083973	+	100	30062566	-	S1110	-	IS600
994	 52.90	0	1084114..1084752	+	212	30062567	-	S1111	-	IS600 ORF2
995	 42.94	-2	1085157..1085489	+	110	30062568	csgC	S1113	-	putative autoagglutination protein
996	 44.23	-1	1085610..1085921	+	103	30062569	-	S1114	-	hypothetical protein
997	 51.69	0	1086016..1086549	+	177	30062570	-	S1115	-	hypothetical protein
998	 50.54	0	1086491..1087972	+	493	30062571	ymdC	S1116	-	putative synthase
999	 43.70	-1	1087980..1089137	-	385	30062572	mdoC	S1117	-	glucans biosynthesis protein
1000	 49.54	0	1089531..1091066	+	511	30062573	mdoG	S1118	-	glucan biosynthesis protein G
1001	 54.68	0	1091059..1093602	+	847	30062574	mdoH	S1119	-	glucosyltransferase MdoH
1002	 53.41	0	1094152..1095207	-	351	30062575	-	S1120	-	IS91 orf
1003	 51.06	0	1095207..1095629	-	140	30062576	-	S4816	-	hypothetical protein
1004	 41.69	-2	1095591..1096931	+	446	30062577	-	S4815	-	hypothetical protein
1005	 38.83	-2	1096928..1097200	+	90	30062578	-	S4817	-	hypothetical protein
1006	 54.43	0	1097304..1097924	-	206	30062579	-	S1123	-	IS629 orfB
1007	 54.74	0	1098187..1098513	-	108	30062580	-	S1124	-	IS629 orfA
1008	 44.88	-1	1098945..1099247	+	100	30062581	-	S1126	-	IS911 orfA
1009	 54.42	0	1099436..1100113	+	225	30062582	-	S1127	-	IS911 orfB
1010	 42.55	-2	1100131..1100553	-	140	30062583	-	S1128	-	hypothetical protein
1011	 53.01	0	1100686..1101051	+	121	161486512	-	S1129	-	insertion sequence 2 OrfA protein
1012	 55.30	0	1101009..1101914	+	301	161486511	-	S1130	-	insertion element IS2 transposase InsD
1013	 54.43	0	1102310..1102636	+	108	30062586	-	S1131	-	IS629 orfA
1014	 54.63	0	1102872..1103519	+	215	30062587	-	S1132	-	IS629 orfB
1015	 46.86	-1	1103807..1104109	+	100	30062588	-	S1133	-	IS600 orfA
1016	 55.62	0	1104250..1104729	+	159	30062589	-	S1134	-	IS600 orfB
1017	 46.22	-1	1104738..1104962	+	74	30062590	-	S1135	-	IS600 orfB
1018	 43.62	-1	1104987..1105919	-	310	30062591	-	S1136	-	hypothetical protein
1019	 52.88	0	1106312..1107232	-	306	30062592	htrB	S1138	-	lipid A biosynthesis lauroyl acyltransferase
1020	 49.67	0	1107457..1108509	+	350	30062593	yceA	S1139	-	hypothetical protein
1021	 46.70	-1	1108551..1109126	-	191	30062594	yceI	S1140	-	hypothetical protein
1022	 50.97	0	1109130..1109696	-	188	30062595	-	S1141	-	putative cytochrome
1023	 37.72	-2	1109957..1110070	-	37	30062596	yceO	S1142	-	hypothetical protein
1024	 52.46	0	1110118..1111236	-	372	30062597	solA	S1143	-	N-methyltryptophan oxidase
1025	 45.49	-1	1111351..1111605	-	84	161486510	bssS	S1144	-	biofilm formation regulatory protein BssS
1026	 47.97	0	1111895..1112140	-	81	30062599	dinI	S1145	-	DNA damage-inducible protein I
1027	 53.10	0	1112214..1113260	-	348	30062600	pyrC	S1146	-	dihydroorotase
1028	 46.88	-1	1113366..1113926	-	186	30062601	yceB	S1147	-	hypothetical protein
1029	 48.77	0	1114060..1114707	-	215	30062602	grxB	S1148	-	glutaredoxin 2
1030	 55.33	0	1114771..1115979	-	402	30062603	yceL	S1149	-	multidrug resistance protein MdtH
1031	 49.57	0	1116215..1116799	+	194	30062604	rimJ	S1150	-	ribosomal-protein-S5-alanine N-acetyltransferase
1032	 51.70	0	1116810..1117457	+	215	30062605	yceH	S1151	-	hypothetical protein
1033	 54.92	0	1117459..1118292	+	277	30062606	mviM	S1152	-	putative virulence factor
1034	 53.45	0	1118492..1120027	+	511	30062607	mviN	S1153	-	putative virulence factor
1035	 47.96	0	1120067..1120483	-	138	30062608	flgN	S1154	-	flagella synthesis protein FlgN
1036	 53.06	0	1120488..1120781	-	97	30062609	flgM	S1155	-	anti-sigma28 factor FlgM
1037	 52.12	0	1120857..1121516	-	219	30062610	flgA	S1156	-	flagellar basal body P-ring biosynthesis protein FlgA
1038	 53.96	0	1121671..1122087	+	138	30062611	flgB	S1157	-	flagellar basal body rod protein FlgB
1039	 54.45	0	1122506..1123201	+	231	30062612	flgD	S1159	-	flagellar basal body rod modification protein
1040	 51.36	0	1123226..1124434	+	402	30062613	flgE	S1160	-	flagellar hook protein FlgE
1041	 53.38	0	1125343..1126125	+	260	30062614	flgG	S1162	-	flagellar basal body rod protein FlgG
1042	 53.51	0	1126178..1126876	+	232	30062615	flgH	S1163	-	flagellar basal body L-ring protein
1043	 53.37	0	1126888..1127985	+	365	30062616	flgI	S1164	-	flagellar basal body P-ring protein
1044	 53.93	0	1127985..1128926	+	313	30062617	flgJ	S1165	-	peptidoglycan hydrolase
1045	 55.73	+1	1131785..1134976	-	1063	161486509	rne	S1168	-	ribonuclease E
1046	 46.40	-1	1135057..1135431	+	124	30062619	-	S1169	-	hypothetical protein
1047	 51.56	0	1135549..1136508	+	319	30062620	yceC	S1170	-	23S rRNA pseudouridylate synthase C
1048	 49.74	0	1136620..1137204	-	194	161486508	maf	S1171	-	Maf-like protein
1049	 49.43	0	1137403..1137924	+	173	30062622	yceD	S1172	-	hypothetical protein
1050	 54.02	0	1137976..1138149	+	57	30062623	rpmF	S1173	-	50S ribosomal protein L32
1051	 51.91	0	1138230..1139300	+	356	161486507	plsX	S1174	-	putative glycerol-3-phosphate acyltransferase PlsX
1052	 54.40	0	1139368..1140321	+	317	30062625	fabH	S1175	-	3-oxoacyl-(acyl carrier protein) synthase III
1053	 55.05	0	1140337..1141266	+	309	30062626	fabD	S1176	-	acyl carrier protein S-malonyltransferase
1054	 51.43	0	1141279..1142013	+	244	30062627	fabG	S1177	-	3-ketoacyl-(acyl-carrier-protein) reductase
1055	 48.10	0	1142224..1142460	+	78	30062628	acpP	S1178	-	acyl carrier protein
1056	 53.30	0	1142547..1143788	+	413	30062629	fabF	S1179	-	3-oxoacyl-(acyl carrier protein) synthase II
1057	 50.62	0	1143908..1144717	+	269	30062630	pabC	S1180	-	4-amino-4-deoxychorismate lyase
1058	 50.54	0	1144720..1145742	+	340	30062631	yceG	S1181	-	hypothetical protein
1059	 53.74	0	1145732..1146373	+	213	30062632	tdk	S1182	-	thymidylate kinase
1060	 54.23	0	1146370..1147374	+	334	30062633	holB	S1183	-	DNA polymerase III subunit delta'
1061	 50.50	0	1147385..1148182	+	265	30062634	ycfH	S1184	-	putative metallodependent hydrolase
1062	 52.09	0	1148477..1149910	+	477	30062635	ptsG	S1185	-	glucose-specific PTS system IIBC components
1063	 50.28	0	1152494..1152853	+	119	30062636	ycfF	S1187	-	purine nucleoside phosphoramidase
1064	 49.47	0	1152856..1153233	+	125	30062637	ycfL	S1188	-	hypothetical protein
1065	 56.54	+1	1153248..1153889	+	213	30062638	ycfM	S1189	-	hypothetical protein
1066	 52.73	0	1153870..1154694	+	274	30062639	thiK	S1190	-	thiamine kinase
1067	 53.02	0	1154705..1155730	+	341	30062640	ycfO	S1191	-	beta-hexosaminidase
1068	 46.22	-1	1155753..1156295	+	180	30062641	ycfP	S1192	-	hypothetical protein
1069	 52.34	0	1156703..1158007	+	434	30062642	ndh	S1193	-	respiratory NADH dehydrogenase
1070	 53.15	0	1158234..1158773	+	179	30062643	ycfJ	S1194	-	hypothetical protein
1071	 49.79	0	1158835..1159545	-	236	30062644	ycfQ	S1195	-	hypothetical protein
1072	 47.42	-1	1159752..1159964	+	70	30062645	ycfR	S1196	-	hypothetical protein
1073	 53.17	0	1160047..1161009	-	320	30062646	ycfS	S1197	-	hypothetical protein
1074	 54.86	0	1161152..1164598	-	1148	30062647	mfd	S1198	-	transcription-repair coupling factor
1075	 49.26	0	1164726..1165799	-	357	30062648	ycfT	S1199	-	hypothetical protein
1076	 54.58	0	1166061..1167260	+	399	30062649	ycfU	S1200	-	outer membrane-specific lipoprotein transporter subunit LolC
1077	 54.56	0	1167253..1167954	+	233	30062650	lolD	S1201	-	lipoprotein transporter ATP-binding subunit
1078	 51.49	0	1167954..1169198	+	414	30062651	ycfW	S1202	-	outer membrane-specific lipoprotein transporter subunit LolE
1079	 52.41	0	1169227..1170138	+	303	30062652	ycfX	S1203	-	N-acetyl-D-glucosamine kinase
1080	 50.85	0	1170154..1170975	+	273	30062653	cobB	S1204	-	NAD-dependent deacetylase
1081	 51.29	0	1171131..1172177	-	348	30062654	potD	S1205	-	spermidine/putrescine ABC transporter periplasmic substrate-binding protein
1082	 49.94	0	1172174..1172968	-	264	30062655	potC	S1206	-	spermidine/putrescine ABC transporter membrane protein
1083	 50.70	0	1172965..1173822	-	285	161486506	potB	S1207	-	spermidine/putrescine ABC transporter membrane protein
1084	 50.84	0	1173806..1174942	-	378	30062657	potA	S1208	-	putrescine/spermidine ABC transporter ATPase protein
1085	 49.39	0	1175192..1176418	+	408	30062658	pepT	S1209	-	peptidase T
1086	 53.32	0	1176467..1177597	-	376	30062659	ycfD	S1210	-	hypothetical protein
1087	 51.71	0	1177837..1179066	+	409	30062660	-	S1211	-	putative integrase of prophage CP-933C
1088	 50.83	0	1180340..1180642	+	100	30062661	-	S1212	-	hypothetical protein
1089	 48.00	0	1181307..1181606	+	99	30062662	-	S1214	-	hypothetical protein
1090	 52.49	0	1181603..1183351	+	582	30062663	-	S1215	-	bacteriophage P4 DNA primase
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.