IslandPath Analysis: Salinispora tropica CNB-440



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.44   STD DEV: 3.32
Salinispora tropica CNB-440, complete genome - 1..5183331
4536 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
866	 76.19	+2	975672..976616	-	314	145593432	-	Strop_0874	-	hypothetical protein
867	 68.80	0	976620..977651	-	343	145593433	glpX	Strop_0875	-	fructose 1,6-bisphosphatase II
868	 75.13	+1	977803..978570	+	255	145593434	-	Strop_0876	-	hypothetical protein
869	 72.30	0	978649..978861	-	70	145593435	-	Strop_0877	-	exonuclease VII, small subunit
870	 73.05	+1	978973..980226	-	417	145593436	-	Strop_0878	-	exodeoxyribonuclease VII, large subunit
871	 68.80	0	980300..981283	+	327	145593437	ispH	Strop_0879	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
872	 72.54	0	981382..981858	+	158	145593438	-	Strop_0880	-	hypothetical protein
873	 69.53	0	981929..985174	-	1081	145593439	-	Strop_0881	-	tripeptidyl-peptidase II
874	 73.73	+1	985354..986514	-	386	145593440	-	Strop_0882	-	hypothetical protein
875	 71.05	0	986608..989526	-	972	145593441	-	Strop_0883	-	phosphoenolpyruvate carboxylase
876	 71.57	0	989631..993281	+	1216	145593442	-	Strop_0884	-	transcription-repair coupling factor
877	 72.16	0	993283..994101	+	272	145593443	-	Strop_0885	-	hypothetical protein
878	 74.67	+1	994104..995090	+	328	145593444	-	Strop_0886	-	nucleoside triphosphate pyrophosphohydrolase
879	 71.47	0	995130..996794	+	554	145593445	-	Strop_0887	-	hypothetical protein
880	 66.00	-1	996994..997446	-	150	145593446	-	Strop_0888	-	hypothetical protein
881	 71.10	0	997808..998506	-	232	145593447	-	Strop_0889	-	hypothetical protein
882	 66.36	0	998738..1000021	+	427	145593448	-	Strop_0890	-	phosphopyruvate hydratase
883	 75.44	+1	1000054..1000680	+	208	145593449	-	Strop_0891	-	septum formation initiator
884	 73.66	+1	1000709..1001266	+	185	145593450	-	Strop_0892	-	hypothetical protein
885	 66.08	-1	1001268..1001780	+	170	145593451	-	Strop_0893	-	N-acetylglutamate synthase
886	 70.90	0	1001814..1002758	+	314	145593452	-	Strop_0894	-	Ppx/GppA phosphatase
887	 66.67	0	1002855..1003187	+	110	145593453	-	Strop_0895	-	transcriptional regulator PadR family protein
888	 70.01	0	1003184..1004230	+	348	145593454	-	Strop_0896	-	hypothetical protein
889	 66.47	0	1004374..1004871	+	165	145593455	-	Strop_0897	-	hypothetical protein
890	 71.03	0	1005067..1005753	+	228	145593456	-	Strop_0898	-	dienelactone hydrolase
891	 73.88	+1	1005800..1006561	+	253	145593457	-	Strop_0899	-	uracil-DNA glycosylase superfamily protein
892	 75.61	+1	1006580..1007362	+	260	145593458	-	Strop_0900	-	hypothetical protein
893	 71.83	0	1007403..1008002	+	199	145593459	-	Strop_0901	-	hypothetical protein
894	 69.74	0	1008002..1009009	+	335	145593460	-	Strop_0902	-	ATPase
895	 73.09	+1	1009009..1010409	+	466	145593461	-	Strop_0903	-	hypothetical protein
896	 70.41	0	1010441..1011001	+	186	145593462	-	Strop_0904	-	hypothetical protein
897	 69.38	0	1011101..1012426	+	441	145593463	-	Strop_0905	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
898	 65.56	-1	1012776..1013591	+	271	145593464	-	Strop_0906	-	hypothetical protein
899	 75.17	+1	1013758..1014051	+	97	145593465	-	Strop_0907	-	hypothetical protein
900	 69.75	0	1014099..1015361	-	420	145593466	-	Strop_0908	-	acetyl-CoA acetyltransferase
901	 74.17	+1	1015418..1016230	-	270	145593467	-	Strop_0909	-	GDSL family lipase
902	 74.49	+1	1016227..1017312	-	361	145593468	-	Strop_0910	-	GDSL family lipase
903	 72.27	0	1017437..1017793	+	118	145593469	-	Strop_0911	-	hypothetical protein
904	 68.78	0	1017876..1019246	+	456	145593470	-	Strop_0912	-	cystathionine beta-synthase
905	 71.96	0	1019326..1019835	-	169	145593471	-	Strop_0913	-	GCN5-related N-acetyltransferase
906	 70.67	0	1019832..1020755	-	307	145593472	-	Strop_0914	-	ribonuclease Z
907	 69.68	0	1021173..1022366	-	397	145593473	-	Strop_0915	-	peptidase M42 family protein
908	 71.53	0	1022363..1024213	-	616	145593474	-	Strop_0916	-	glutathione synthase
909	 69.52	0	1024216..1026000	-	594	145593475	-	Strop_0917	-	asparagine synthase (glutamine-hydrolyzing)
910	 68.78	0	1026249..1026911	-	220	145593476	-	Strop_0918	-	peptide methionine sulfoxide reductase
911	 69.98	0	1026986..1027408	-	140	145593477	-	Strop_0919	-	histidine triad (HIT) protein
912	 69.29	0	1027561..1028703	+	380	145593478	-	Strop_0920	-	cystathionine gamma-synthase
913	 75.04	+1	1028722..1030131	+	469	145593479	-	Strop_0921	-	amidase
914	 71.95	0	1030228..1031439	+	403	145593480	-	Strop_0922	-	threonine dehydratase
915	 68.07	0	1031519..1032016	-	165	145593481	-	Strop_0923	-	transcription elongation factor GreA
916	 71.03	0	1032154..1032588	-	144	145593482	-	Strop_0924	-	hypothetical protein
917	 68.06	0	1032872..1033735	+	287	145593483	-	Strop_0925	-	LmbE family protein
918	 70.10	0	1033820..1034110	+	96	145593484	-	Strop_0926	-	hypothetical protein
919	 72.05	0	1034296..1036821	+	841	145593485	-	Strop_0927	-	diguanylate cyclase
920	 66.39	0	1036918..1037628	-	236	145593486	-	Strop_0928	-	B3/4 domain-containing protein
921	 72.24	0	1038377..1040476	+	699	145593487	-	Strop_0929	-	hypothetical protein
922	 70.30	0	1040535..1041716	+	393	145593488	-	Strop_0930	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
923	 67.89	0	1041713..1042204	+	163	145593489	-	Strop_0931	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
924	 75.49	+1	1042323..1047227	-	1634	145593490	-	Strop_0932	-	hypothetical protein
925	 69.61	0	1047353..1048780	-	475	145593491	-	Strop_0933	-	UDP-glucose 6-dehydrogenase
926	 68.30	0	1049030..1050193	+	387	145593492	-	Strop_0934	-	acyl-CoA dehydrogenase domain-containing protein
927	 68.83	0	1050260..1050907	-	215	145593493	-	Strop_0935	-	hypothetical protein
928	 69.75	0	1050931..1051449	+	172	145593494	-	Strop_0936	-	thioesterase superfamily protein
929	 70.87	0	1051600..1053597	+	665	145593495	-	Strop_0937	-	acetoacetyl-CoA synthetase
930	 73.62	+1	1053615..1054304	-	229	145593496	-	Strop_0938	-	hypothetical protein
931	 71.38	0	1054456..1055601	+	381	145593497	-	Strop_0939	-	glycosyl transferase, group 1
932	 70.13	0	1055657..1056754	+	365	145593498	-	Strop_0940	-	mannose-1-phosphate guanylyltransferase (GDP)
933	 72.17	0	1056723..1057322	-	199	145593499	-	Strop_0941	-	NUDIX hydrolase
934	 72.33	0	1057363..1058421	+	352	145593500	-	Strop_0942	-	hypothetical protein
935	 72.54	0	1058479..1059567	-	362	145593501	-	Strop_0943	-	F420-dependent oxidoreductase, putative
936	 71.16	0	1059564..1060520	-	318	145593502	-	Strop_0944	-	LPPG:FO 2-phospho-L-lactate transferase
937	 71.25	0	1060611..1061504	+	297	145593503	-	Strop_0945	-	hypothetical protein
938	 70.62	0	1061526..1064108	+	860	145593504	fbiC	Strop_0946	-	FO synthase
939	 69.77	0	1064811..1065068	+	85	145593505	-	Strop_0947	-	transcription factor WhiB
940	 71.33	0	1065149..1065598	-	149	145593506	-	Strop_0948	-	hypothetical protein
941	 72.30	0	1065714..1066121	+	135	145593507	-	Strop_0949	-	hypothetical protein
942	 69.41	0	1066152..1067498	-	448	145593508	-	Strop_0950	-	hypothetical protein
943	 66.09	-1	1067714..1068229	-	171	145593509	-	Strop_0951	-	AsnC/Lrp family regulatory protein
944	 67.49	0	1068711..1069073	+	120	145593510	-	Strop_0952	-	hypothetical protein
945	 63.29	-1	1069070..1069483	+	137	145593511	-	Strop_0953	-	hypothetical protein
946	 66.52	0	1069561..1070220	+	219	145593512	-	Strop_0954	-	methyltransferase type 11
947	 65.22	-1	1070241..1070792	-	183	145593513	-	Strop_0955	-	hypothetical protein
948	 67.67	0	1070945..1071343	-	132	145593514	-	Strop_0956	-	hypothetical protein
949	 66.67	0	1071343..1072848	-	501	145593515	-	Strop_0957	-	aldehyde dehydrogenase
950	 73.38	+1	1072889..1074169	-	426	145593516	-	Strop_0958	-	GAF domain-containing protein
951	 72.95	+1	1074220..1075683	+	487	145593517	-	Strop_0959	-	aldehyde dehydrogenase
952	 73.96	+1	1075849..1076877	+	342	145593518	-	Strop_0960	-	hypothetical protein
953	 68.61	0	1076975..1078360	+	461	145593519	-	Strop_0961	-	phosphomannomutase
954	 73.85	+1	1078601..1079797	+	398	145593520	-	Strop_0963	-	hypothetical protein
955	 66.46	0	1079841..1080812	+	323	145593521	-	Strop_0964	-	cation diffusion facilitator family transporter
956	 72.94	+1	1080817..1081980	+	387	145593522	-	Strop_0965	-	mannose-6-phosphate isomerase, class I
957	 65.12	-1	1082254..1083744	+	496	145593523	-	Strop_0966	-	S-adenosyl-L-homocysteine hydrolase
958	 67.25	0	1084067..1084756	+	229	145593524	-	Strop_0967	-	response regulator receiver
959	 70.01	0	1084847..1086520	+	557	145593525	-	Strop_0968	-	ATPase domain-containing protein
960	 69.44	0	1086517..1088286	+	589	145593526	-	Strop_0969	-	hypothetical protein
961	 77.02	+2	1088293..1088997	+	234	145593527	-	Strop_0970	-	hypothetical protein
962	 68.74	0	1089243..1089869	+	208	145593528	-	Strop_0971	-	ribosomal subunit interface protein
963	 73.58	+1	1089975..1091102	-	375	145593529	-	Strop_0972	-	GCN5-related N-acetyltransferase
964	 67.87	0	1091380..1094295	+	971	145593530	-	Strop_0973	-	preprotein translocase, SecA subunit
965	 77.10	+2	1094482..1095075	-	197	145593531	-	Strop_0974	-	hypothetical protein
69.44	MEAN

3.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.