IslandPath Analysis: Salinispora tropica CNB-440



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.44   STD DEV: 3.32
Salinispora tropica CNB-440, complete genome - 1..5183331
4536 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
775	 74.89	+1	870378..871325	+	315	145593341	-	Strop_0783	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
776	 73.18	+1	871425..873221	+	598	145593342	-	Strop_0784	-	ABC transporter related
777	 67.76	0	873335..873790	+	151	145593343	-	Strop_0785	-	hypothetical protein
778	 66.25	0	873946..874422	+	158	145593344	-	Strop_0786	-	hypothetical protein
779	 68.28	0	874424..875104	-	226	145593345	-	Strop_0787	-	regulatory protein, TetR
780	 72.77	+1	875601..877139	+	512	145593346	-	Strop_0788	-	UDP-N-acetylglucosamine pyrophosphorylase
781	 66.97	0	877192..878172	+	326	145593347	-	Strop_0789	-	ribose-phosphate pyrophosphokinase
782	 71.65	0	878469..879170	+	233	145593348	-	Strop_0790	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
783	 68.19	0	879264..879854	+	196	145593349	-	Strop_0791	-	aminoacyl-tRNA hydrolase
784	 70.65	0	879917..880744	+	275	145593350	-	Strop_0792	-	inositol monophosphatase
785	 68.75	0	880814..881725	+	303	145593351	-	Strop_0793	-	sulfate adenylyltransferase subunit 2
786	 67.28	0	881725..883032	+	435	145593352	-	Strop_0794	-	sulfate adenylyltransferase, large subunit
787	 71.44	0	883132..884115	-	327	145593353	-	Strop_0795	-	UDP-glucose 4-epimerase
788	 72.63	0	884285..885307	+	340	145593354	-	Strop_0796	-	CBS domain-containing protein
789	 66.57	0	885304..886365	+	353	145593355	-	Strop_0797	-	tryptophanyl-tRNA synthetase
790	 70.20	0	886381..886974	+	197	145593356	-	Strop_0798	-	2',5' RNA ligase
791	 70.65	0	886979..888082	+	367	145593357	-	Strop_0799	-	ribonuclease BN
792	 71.62	0	888090..888533	+	147	145593358	-	Strop_0800	-	hypothetical protein
793	 70.28	0	888610..890241	-	543	145593359	-	Strop_0801	-	alpha amylase, catalytic region
794	 71.27	0	890373..891479	-	368	145593360	-	Strop_0802	-	alanine racemase
795	 65.98	-1	891824..893125	+	433	145593361	-	Strop_0803	-	extracellular solute-binding protein
796	 65.38	-1	893236..894249	+	337	145593362	-	Strop_0804	-	binding-protein-dependent transport systems inner membrane component
797	 66.45	0	894249..895184	+	311	145593363	-	Strop_0805	-	binding-protein-dependent transport systems inner membrane component
798	 63.74	-1	895245..895586	+	113	145593364	-	Strop_0806	-	hypothetical protein
799	 67.04	0	895842..896921	+	359	145593365	-	Strop_0807	-	basic membrane lipoprotein
800	 68.93	0	896896..898710	+	604	145593366	-	Strop_0808	-	ABC transporter related
801	 68.57	0	898707..900020	+	437	145593367	-	Strop_0809	-	inner-membrane translocator
802	 68.62	0	900026..901306	+	426	145593368	-	Strop_0810	-	inner-membrane translocator
803	 71.21	0	901318..902022	+	234	145593369	-	Strop_0811	-	cytidine deaminase
804	 72.13	0	902111..903391	+	426	145593370	deoA	Strop_0812	-	thymidine phosphorylase
805	 70.34	0	903485..904165	+	226	145593371	-	Strop_0813	-	hypothetical protein
806	 73.58	+1	904162..905043	-	293	145593372	-	Strop_0814	-	methyltransferase type 11
807	 69.59	0	905216..906310	+	364	145593373	-	Strop_0815	-	adenosine deaminase
808	 70.87	0	906899..910393	+	1164	145593374	-	Strop_0816	-	ATPase domain-containing protein
809	 67.90	0	910390..910794	+	134	145593375	-	Strop_0817	-	roadblock/LC7 family protein
810	 67.46	0	910890..911267	+	125	145593376	-	Strop_0818	-	hypothetical protein
811	 64.54	-1	911248..911859	+	203	145593377	-	Strop_0819	-	protein of unknown function, ATP binding
812	 73.91	+1	912085..914319	-	744	145593378	-	Strop_0820	-	hypothetical protein
813	 69.35	0	914383..915276	-	297	145593379	-	Strop_0821	-	hypothetical protein
814	 75.65	+1	915480..917315	-	611	145593380	-	Strop_0822	-	ABC transporter, transmembrane region, type 1
815	 73.40	+1	917312..918988	-	558	145593381	-	Strop_0823	-	ABC transporter, transmembrane region, type 1
816	 72.30	0	919086..919991	-	301	145593382	-	Strop_0824	-	peptidase M48, Ste24p
817	 73.10	+1	920000..920434	-	144	145593383	-	Strop_0825	-	penicillinase repressor
818	 71.67	0	920466..921305	-	279	145593384	-	Strop_0826	-	hypothetical protein
819	 69.53	0	921298..922728	-	476	145593385	-	Strop_0827	-	aldehyde dehydrogenase
820	 71.12	0	922734..923744	-	336	145593386	-	Strop_0828	-	deoxyribose-phosphate aldolase
821	 71.56	0	923870..924502	+	210	145593387	-	Strop_0829	-	uracil phosphoribosyltransferase
822	 72.88	+1	924613..926319	-	568	145593388	-	Strop_0830	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
823	 70.56	0	926352..928379	-	675	145593389	-	Strop_0831	-	protein kinase
824	 68.67	0	928485..930128	+	547	145593390	-	Strop_0832	-	methylmalonyl-CoA mutase, large subunit
825	 70.06	0	930563..932005	+	480	145593391	-	Strop_0833	-	amidohydrolase
826	 68.89	0	932166..932795	+	209	145593392	-	Strop_0834	-	beta-lactamase domain-containing protein
827	 75.19	+1	932801..933727	+	308	145593393	-	Strop_0835	-	hypothetical protein
828	 69.52	0	933827..934282	-	151	145593394	-	Strop_0836	-	hypothetical protein
829	 69.87	0	934389..935792	+	467	145593395	-	Strop_0837	-	flavoprotein disulfide reductase
830	 64.87	-1	935966..936799	+	277	145593396	-	Strop_0838	-	hypothetical protein
831	 67.67	0	937385..937882	+	165	145593397	-	Strop_0839	-	GCN5-related N-acetyltransferase
832	 66.50	0	938148..939356	+	402	145593398	-	Strop_0840	-	helix-turn-helix domain-containing protein
833	 72.17	0	940204..941421	+	405	145593399	-	Strop_0841	-	tRNA synthetase, class II (G, H, P and S)
834	 69.09	0	941550..943568	-	672	145593400	-	Strop_0842	-	ABC transporter, transmembrane region
835	 69.67	0	943565..945298	-	577	145593401	-	Strop_0843	-	ABC transporter related
836	 71.24	0	945404..945928	-	174	145593402	-	Strop_0844	-	DoxX family protein
837	 72.13	0	945931..946497	+	188	145593403	-	Strop_0845	-	regulatory protein, TetR
838	 73.84	+1	946469..947026	-	185	145593404	-	Strop_0846	-	regulatory protein, MarR
839	 73.31	+1	947079..948734	+	551	145593405	-	Strop_0847	-	EmrB/QacA family drug resistance transporter
840	 71.39	0	948744..950183	-	479	145593406	-	Strop_0848	-	inositol-5-monophosphate dehydrogenase
841	 70.49	0	950330..952081	-	583	145593407	-	Strop_0849	-	carbamoyl-phosphate synthase L chain, ATP-binding
842	 69.27	0	952297..952950	-	217	145593408	-	Strop_0850	-	caffeoyl-CoA O-methyltransferase
843	 69.90	0	952991..953671	-	226	145593409	-	Strop_0851	-	maf protein
844	 70.74	0	954861..956726	+	621	145593410	-	Strop_0852	-	protein kinase
845	 71.24	0	956801..957544	+	247	145593411	-	Strop_0853	-	hypothetical protein
846	 72.65	0	957652..958152	+	166	145593412	-	Strop_0854	-	sigma-70, region 4 type 2
847	 69.40	0	958145..959023	+	292	145593413	-	Strop_0855	-	hypothetical protein
848	 67.23	0	959076..960659	-	527	145593414	-	Strop_0856	-	carboxyl transferase
849	 74.32	+1	960745..961620	+	291	145593415	-	Strop_0857	-	biotin--acetyl-CoA-carboxylase ligase
850	 70.70	0	961745..962314	+	189	145593416	-	Strop_0858	-	membrane-flanked domain-containing protein
851	 65.66	-1	962357..963049	-	230	145593417	-	Strop_0859	-	GtrA family protein
852	 66.79	0	963114..963917	-	267	145593418	-	Strop_0860	-	GtrA family protein
853	 65.74	-1	964053..965891	+	612	145593419	-	Strop_0861	-	phosphoenolpyruvate carboxykinase
854	 75.26	+1	965985..967148	+	387	145593420	-	Strop_0862	-	geranylgeranyl reductase
855	 66.80	0	967180..967950	+	256	145593421	-	Strop_0863	-	undecaprenyl diphosphate synthase
856	 71.39	0	968082..968906	-	274	145593422	-	Strop_0864	-	HAD family hydrolase
857	 66.10	-1	969008..969361	-	117	145593423	-	Strop_0865	-	hypothetical protein
858	 68.92	0	969522..969965	-	147	145593424	-	Strop_0866	-	helix-turn-helix domain-containing protein
859	 68.38	0	970165..970572	+	135	145593425	-	Strop_0867	-	hypothetical protein
860	 72.37	0	970604..970936	+	110	145593426	-	Strop_0868	-	hypothetical protein
861	 68.67	0	971319..972017	+	232	145593427	-	Strop_0869	-	hypothetical protein
862	 66.21	0	972149..972802	+	217	145593428	-	Strop_0870	-	rhomboid family protein
863	 71.00	0	972912..973880	+	322	145593429	-	Strop_0871	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
864	 69.99	0	973897..974589	-	230	145593430	-	Strop_0872	-	regulatory protein, TetR
865	 72.77	+1	974725..975675	+	316	145593431	-	Strop_0873	-	NAD-dependent epimerase/dehydratase
866	 76.19	+2	975672..976616	-	314	145593432	-	Strop_0874	-	hypothetical protein
867	 68.80	0	976620..977651	-	343	145593433	glpX	Strop_0875	-	fructose 1,6-bisphosphatase II
868	 75.13	+1	977803..978570	+	255	145593434	-	Strop_0876	-	hypothetical protein
869	 72.30	0	978649..978861	-	70	145593435	-	Strop_0877	-	exonuclease VII, small subunit
870	 73.05	+1	978973..980226	-	417	145593436	-	Strop_0878	-	exodeoxyribonuclease VII, large subunit
871	 68.80	0	980300..981283	+	327	145593437	ispH	Strop_0879	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
872	 72.54	0	981382..981858	+	158	145593438	-	Strop_0880	-	hypothetical protein
873	 69.53	0	981929..985174	-	1081	145593439	-	Strop_0881	-	tripeptidyl-peptidase II
874	 73.73	+1	985354..986514	-	386	145593440	-	Strop_0882	-	hypothetical protein
69.44	MEAN

3.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.