IslandPath Analysis: Salinispora tropica CNB-440



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.44   STD DEV: 3.32
Salinispora tropica CNB-440, complete genome - 1..5183331
4536 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
430	 69.96	0	490067..491464	+	465	145592996	-	Strop_0430	-	L-serine dehydratase 1
431	 67.63	0	491519..492346	+	275	145592997	-	Strop_0431	-	ABC-2 type transporter
432	 67.07	0	492348..493097	+	249	145592998	-	Strop_0432	-	ABC transporter related
433	 71.63	0	493109..495061	+	650	145592999	-	Strop_0433	-	CDP-alcohol phosphatidyltransferase
434	 71.04	0	495070..497265	+	731	145593000	-	Strop_0434	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
435	 70.34	0	497392..498753	+	453	145593001	-	Strop_0435	-	ABC transporter related
436	 71.06	0	498862..499293	+	143	145593002	-	Strop_0436	-	hypothetical protein
437	 70.34	0	499373..500107	+	244	145593003	-	Strop_0437	-	beta-phosphoglucomutase family hydrolase
438	 68.27	0	500104..502479	+	791	145593004	-	Strop_0438	-	Kojibiose phosphorylase
439	 72.38	0	502962..503609	+	215	145593005	-	Strop_0439	-	dienelactone hydrolase
440	 61.38	-2	503707..503895	+	62	145593006	-	Strop_0440	-	hypothetical protein
441	 68.48	0	503967..504626	-	219	145593007	-	Strop_0441	-	hypothetical protein
442	 70.32	0	504923..505633	+	236	145593008	-	Strop_0442	-	carbonic anhydrase
443	 66.58	0	505742..506842	-	366	145593009	-	Strop_0443	-	hypothetical protein
444	 72.16	0	507057..508403	-	448	145593010	-	Strop_0444	-	YibE/F family protein
445	 70.19	0	508593..508904	-	103	145593011	-	Strop_0445	-	hypothetical protein
446	 68.35	0	508999..509235	+	78	145593012	-	Strop_0446	-	heavy metal transport/detoxification protein
447	 72.38	0	509232..509441	+	69	145593013	-	Strop_0447	-	hypothetical protein
448	 72.60	0	509438..511729	+	763	145593014	-	Strop_0448	-	heavy metal translocating P-type ATPase
449	 71.84	0	512154..513197	-	347	145593015	-	Strop_0449	-	sodium/calcium exchanger membrane region
450	 65.78	-1	513359..514150	+	263	145593016	-	Strop_0450	-	methyltransferase type 12
451	 71.23	0	514356..515057	-	233	145593017	-	Strop_0451	-	spermidine synthase-like protein
452	 71.14	0	515174..515710	+	178	145593018	-	Strop_0452	-	ECF subfamily RNA polymerase sigma-24 factor
453	 73.79	+1	515707..516492	+	261	145593019	-	Strop_0453	-	putative transmembrane anti-sigma factor
454	 71.96	0	516489..517244	+	251	145593020	-	Strop_0454	-	ABC transporter related
455	 73.98	+1	517241..518512	+	423	145593021	-	Strop_0455	-	hypothetical protein
456	 74.68	+1	518509..519132	+	207	145593022	-	Strop_0456	-	hypothetical protein
457	 65.01	-1	519272..520117	+	281	145593023	-	Strop_0457	-	transcription factor jumonji domain-containing protein
458	 67.94	0	520114..521367	+	417	145593024	-	Strop_0458	-	hypothetical protein
459	 71.20	0	521364..522224	+	286	145593025	-	Strop_0459	-	HpcH/HpaI aldolase
460	 72.05	0	522221..523186	+	321	145593026	-	Strop_0460	-	ornithine cyclodeaminase/mu-crystallin
461	 71.91	0	523173..524525	+	450	145593027	-	Strop_0461	-	hypothetical protein
462	 65.65	-1	524576..525067	+	163	145593028	-	Strop_0462	-	dehydratase
463	 69.79	0	525178..526680	+	500	145593029	-	Strop_0463	-	peptidase M24
464	 69.08	0	526703..526909	+	68	145593030	-	Strop_0464	-	hypothetical protein
465	 71.55	0	526954..527649	-	231	145593031	-	Strop_0465	-	hypothetical protein
466	 75.85	+1	527646..529202	-	518	145593032	-	Strop_0466	-	hypothetical protein
467	 69.09	0	529234..530928	-	564	145593033	-	Strop_0467	-	ATPase central domain-containing protein
468	 70.31	0	531153..531536	+	127	145593034	-	Strop_0468	-	hypothetical protein
469	 70.78	0	531533..532018	+	161	145593035	-	Strop_0469	-	hypothetical protein
470	 71.51	0	532012..533292	+	426	145593036	-	Strop_0470	-	hypothetical protein
471	 66.44	0	533303..534604	-	433	145593037	-	Strop_0471	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
472	 68.88	0	534703..536283	-	526	145593038	-	Strop_0472	-	hypothetical protein
473	 62.34	-2	536319..537080	-	253	145593039	-	Strop_0473	-	hypothetical protein
474	 69.37	0	537101..541057	-	1318	145593040	-	Strop_0474	-	cell divisionFtsK/SpoIIIE
475	 72.50	0	541194..542582	+	462	145593041	-	Strop_0475	-	hypothetical protein
476	 66.27	0	542592..543353	-	253	145593042	-	Strop_0476	-	hypothetical protein
477	 68.96	0	543491..544930	+	479	145593043	-	Strop_0477	-	hypothetical protein
478	 63.94	-1	545073..545402	+	109	145593044	-	Strop_0478	-	hypothetical protein
479	 64.93	-1	545423..545710	+	95	145593045	-	Strop_0479	-	hypothetical protein
480	 69.44	0	545814..547109	-	431	145593046	-	Strop_0480	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
481	 62.33	-2	547220..547657	+	145	145593047	-	Strop_0481	-	hypothetical protein
482	 63.72	-1	547654..547992	+	112	145593048	-	Strop_0482	-	hypothetical protein
483	 70.06	0	548035..559299	+	3754	145593049	-	Strop_0483	-	hypothetical protein
484	 69.43	0	559353..560870	+	505	145593050	-	Strop_0484	-	hypothetical protein
485	 67.68	0	560867..561556	+	229	145593051	-	Strop_0485	-	hypothetical protein
486	 73.44	+1	561526..562071	-	181	145593052	-	Strop_0486	-	hypothetical protein
487	 65.41	-1	562421..563698	-	425	145593053	-	Strop_0487	-	hypothetical protein
488	 65.88	-1	563815..564069	-	84	145593054	-	Strop_0488	-	hypothetical protein
489	 63.53	-1	564615..565061	+	148	145593055	-	Strop_0489	-	hypothetical protein
490	 67.10	0	565585..566049	-	154	145593056	-	Strop_0490	-	hypothetical protein
491	 69.46	0	566531..567283	-	250	145593057	-	Strop_0491	-	hypothetical protein
492	 70.78	0	567472..570363	+	963	145593058	-	Strop_0492	-	transcriptional regulator
493	 69.45	0	570421..572145	-	574	145593059	-	Strop_0493	-	FAD dependent oxidoreductase
494	 66.86	0	572218..573735	-	505	145593060	glpK	Strop_0494	-	glycerol kinase
495	 67.26	0	573774..574613	-	279	145593061	-	Strop_0495	-	MIP family channel protein
496	 68.98	0	574702..575565	+	287	145593062	-	Strop_0496	-	regulatory protein, IclR
497	 68.11	0	575604..577127	+	507	145593063	-	Strop_0497	-	glycerol kinase
498	 62.42	-2	577550..577855	+	101	145593064	-	Strop_0498	-	hypothetical protein
499	 63.16	-1	577988..578272	+	94	145593065	-	Strop_0499	-	hypothetical protein
500	 63.56	-1	578245..579243	-	332	145593066	-	Strop_0500	-	aldo/keto reductase
501	 63.69	-1	579983..580789	-	268	145593067	-	Strop_0501	-	hypothetical protein
502	 69.45	0	581319..582395	-	358	145593068	-	Strop_0502	-	beta-lactamase
503	 72.50	0	582508..583398	+	296	145593069	-	Strop_0503	-	ABC transporter related
504	 70.43	0	583825..584169	+	114	145593070	-	Strop_0505	-	hypothetical protein
505	 65.60	-1	584162..584443	-	93	145593071	-	Strop_0506	-	hypothetical protein
506	 63.82	-1	585090..585476	+	128	145593072	-	Strop_0507	-	hypothetical protein
507	 68.36	0	585555..586382	-	275	145593073	-	Strop_0508	-	hypothetical protein
508	 67.09	0	586463..586930	-	155	145593074	-	Strop_0509	-	hypothetical protein
509	 66.81	0	587003..588424	+	473	145593075	-	Strop_0510	-	helix-turn-helix domain-containing protein
510	 67.11	0	588475..588921	-	148	145593076	-	Strop_0511	-	hypothetical protein
511	 63.71	-1	589581..590393	+	270	145593077	-	Strop_0512	-	helix-turn-helix domain-containing protein
512	 69.31	0	590390..590578	+	62	145593078	-	Strop_0513	-	hypothetical protein
513	 68.63	0	590639..591148	-	169	145593079	-	Strop_0514	-	hypothetical protein
514	 66.03	-1	591145..591618	-	157	145593080	-	Strop_0515	-	hypothetical protein
515	 68.12	0	591615..592094	-	159	145593081	-	Strop_0516	-	hypothetical protein
516	 62.98	-1	592120..592905	-	261	145593082	-	Strop_0517	-	hypothetical protein
517	 61.56	-2	592886..593335	-	149	145593083	-	Strop_0518	-	hypothetical protein
518	 62.05	-2	593335..594006	-	223	145593084	-	Strop_0519	-	hypothetical protein
519	 65.99	-1	594832..595272	-	146	145593085	-	Strop_0520	-	recombination endonuclease VII
520	 60.76	-2	595272..596084	-	270	145593086	-	Strop_0521	-	hypothetical protein
521	 60.22	-2	596148..596612	-	154	145593087	-	Strop_0522	-	hypothetical protein
522	 68.24	0	596661..597170	-	169	145593088	-	Strop_0523	-	hypothetical protein
523	 65.33	-1	597218..598189	-	323	145593089	-	Strop_0524	-	hypothetical protein
524	 70.72	0	598639..598983	-	114	145593090	-	Strop_0525	-	hypothetical protein
525	 62.94	-1	599029..599511	-	160	145593091	-	Strop_0526	-	hypothetical protein
526	 64.79	-1	599930..600196	-	88	145593092	-	Strop_0527	-	hypothetical protein
527	 66.47	0	600227..601231	-	334	145593093	-	Strop_0528	-	peptidoglycan binding domain-containing protein
528	 66.15	0	601580..602926	-	448	145593094	-	Strop_0529	-	fibronectin, type III domain-containing protein
529	 61.57	-2	602935..603621	-	228	145593095	-	Strop_0530	-	hypothetical protein
69.44	MEAN

3.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.