IslandPathversion 1.0

IslandPath Analysis: Salinispora tropica CNB-440



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.44 STD DEV: 3.32
Salinispora tropica CNB-440, complete genome - 1..5183331
4536 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3303	 72.64	0	3849141..3850379	-	412	145595869	-	Strop_3355	-	phosphoglycerate mutase
3304	 70.87	0	3850382..3851119	-	245	145595870	-	Strop_3356	-	hypothetical protein
3305	 72.85	+1	3851109..3851981	-	290	145595871	-	Strop_3357	-	hypothetical protein
3306	 70.18	0	3852040..3852636	-	198	145595872	-	Strop_3358	-	hypothetical protein
3307	 68.87	0	3852633..3853856	-	407	145595873	-	Strop_3359	-	helix-turn-helix domain-containing protein
3308	 71.88	0	3854095..3854766	+	223	145595874	-	Strop_3360	-	hypothetical protein
3309	 66.35	0	3855089..3855406	+	105	145595875	-	Strop_3361	-	hypothetical protein
3310	 73.44	+1	3855433..3856347	-	304	145595876	-	Strop_3362	-	zinc finger SWIM domain-containing protein
3311	 72.91	+1	3856344..3859496	-	1050	145595877	-	Strop_3363	-	non-specific serine/threonine protein kinase
3312	 70.41	0	3859860..3861008	-	382	145595878	-	Strop_3364	-	polysaccharide pyruvyl transferase
3313	 71.30	0	3861140..3861937	-	265	145595879	-	Strop_3365	-	alpha/beta hydrolase fold
3314	 63.26	-1	3862087..3863202	+	371	145595880	-	Strop_3366	-	polysaccharide deacetylase
3315	 64.31	-1	3863395..3864114	+	239	145595881	-	Strop_3367	-	hypothetical protein
3316	 64.96	-1	3864298..3864765	-	155	145595882	-	Strop_3368	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
3317	 66.44	0	3864850..3865287	-	145	145595883	-	Strop_3369	-	hypothetical protein
3318	 73.56	+1	3865396..3867774	-	792	145595884	-	Strop_3370	-	transketolase domain-containing protein
3319	 69.36	0	3867826..3868308	-	160	145595885	-	Strop_3371	-	regulatory protein, MarR
3320	 69.30	0	3868447..3868902	-	151	145595886	-	Strop_3372	-	hypothetical protein
3321	 68.20	0	3869042..3871780	+	912	145595887	aceE	Strop_3373	-	pyruvate dehydrogenase subunit E1
3322	 73.38	+1	3871963..3872409	-	148	145595888	-	Strop_3374	-	cyclase/dehydrase
3323	 68.88	0	3872610..3874007	+	465	145595889	-	Strop_3375	-	glutamyl-tRNA synthetase
3324	 68.36	0	3874262..3874912	+	216	145595890	-	Strop_3376	-	hypothetical protein
3325	 73.49	+1	3875360..3876781	+	473	145595891	-	Strop_3377	-	hypothetical protein
3326	 73.76	+1	3876887..3878056	+	389	145595892	-	Strop_3378	-	acyl transferase domain-containing protein
3327	 71.32	0	3878097..3879041	+	314	145595893	-	Strop_3379	-	3-oxoacyl-(acyl carrier protein) synthase III
3328	 63.33	-1	3879113..3879352	+	79	145595894	-	Strop_3380	-	phosphopantetheine-binding
3329	 71.64	0	3879355..3880581	+	408	145595895	-	Strop_3381	-	beta-ketoacyl synthase
3330	 72.77	+1	3880604..3882028	+	474	145595896	-	Strop_3382	-	propionyl-CoA carboxylase
3331	 72.57	0	3882146..3882823	+	225	145595897	-	Strop_3383	-	hypothetical protein
3332	 72.97	+1	3882858..3884585	-	575	145595898	-	Strop_3384	-	glycoside hydrolase family 3 protein
3333	 72.76	+1	3884692..3885183	-	163	145595899	-	Strop_3385	-	hypothetical protein
3334	 68.79	0	3885495..3885824	+	109	145595900	-	Strop_3386	-	hypothetical protein
3335	 71.88	0	3886072..3886992	+	306	145595901	-	Strop_3387	-	alpha/beta hydrolase fold
3336	 73.41	+1	3887101..3889221	+	706	145595902	-	Strop_3388	-	hypothetical protein
3337	 68.08	0	3889370..3890287	+	305	145595903	-	Strop_3389	-	cation diffusion facilitator family transporter
3338	 69.37	0	3890599..3891669	+	356	145595904	-	Strop_3390	-	hypothetical protein
3339	 65.29	-1	3891746..3892108	-	120	145595905	-	Strop_3391	-	anti-anti-sigma factor
3340	 68.85	0	3892652..3893200	+	182	145595906	-	Strop_3392	-	DSBA oxidoreductase
3341	 75.84	+1	3893312..3896014	-	900	145595907	-	Strop_3393	-	regulatory protein, LuxR
3342	 74.35	+1	3896591..3897775	+	394	145595908	-	Strop_3395	-	alcohol dehydrogenase
3343	 73.68	+1	3897788..3898957	+	389	145595909	-	Strop_3396	-	saccharopine dehydrogenase (NAD(+), L-glutamate-forming)
3344	 69.94	0	3899053..3900336	+	427	145595910	-	Strop_3397	-	seryl-tRNA synthetase
3345	 70.96	0	3900636..3901637	+	333	145595911	-	Strop_3398	-	alcohol dehydrogenase
3346	 68.39	0	3901724..3903175	-	483	145595912	-	Strop_3399	-	polymorphic outer membrane protein
3347	 70.42	0	3903392..3904537	+	381	145595913	-	Strop_3400	-	peptidase M50
3348	 69.75	0	3904718..3905755	-	345	145595914	-	Strop_3401	-	hypothetical protein
3349	 67.04	0	3905755..3906024	-	89	145595915	-	Strop_3402	-	hypothetical protein
3350	 72.45	0	3906311..3907330	-	339	145595916	-	Strop_3403	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
3351	 68.67	0	3907354..3908001	+	215	145595917	-	Strop_3404	-	cupin 2 domain-containing protein
3352	 67.32	0	3908125..3909039	+	304	145595918	-	Strop_3405	-	aldo/keto reductase
3353	 65.42	-1	3909243..3910682	+	479	145595919	-	Strop_3406	-	parallel beta-helix repeat-containing protein
3354	 64.03	-1	3910860..3912224	+	454	145595920	-	Strop_3407	-	hypothetical protein
3355	 64.36	-1	3912499..3913884	-	461	145595921	-	Strop_3408	-	polymorphic outer membrane protein
3356	 62.27	-2	3914159..3914545	-	128	145595922	-	Strop_3409	-	glyoxalase/bleomycin resistance protein/dioxygenase
3357	 60.26	-2	3914545..3914934	-	129	145595923	-	Strop_3410	-	regulatory protein, ArsR
3358	 65.93	-1	3915180..3916679	+	499	145595924	-	Strop_3411	-	amidase
3359	 67.52	0	3917000..3917587	-	195	145595925	-	Strop_3412	-	hypothetical protein
3360	 64.93	-1	3917897..3918241	-	114	145595926	-	Strop_3413	-	hypothetical protein
3361	 63.60	-1	3919181..3920548	+	455	145595927	-	Strop_3415	-	hypothetical protein
3362	 72.94	+1	3920642..3920944	+	100	145595928	-	Strop_3416	-	hypothetical protein
3363	 66.29	0	3920988..3921251	+	87	145595929	-	Strop_3417	-	hypothetical protein
3364	 73.27	+1	3921508..3922749	-	413	145595930	-	Strop_3418	-	amine oxidase
3365	 70.54	0	3922739..3924883	-	714	145595931	-	Strop_3419	-	MMPL domain-containing protein
3366	 68.54	0	3925378..3925698	+	106	145595932	-	Strop_3420	-	hypothetical protein
3367	 66.54	0	3925658..3926467	-	269	145595933	-	Strop_3421	-	ABC-2 type transporter
3368	 71.08	0	3926480..3927295	-	271	145595934	-	Strop_3422	-	ABC-2 type transporter
3369	 68.70	0	3927331..3928263	-	310	145595935	-	Strop_3423	-	ABC transporter related
3370	 74.30	+1	3928370..3928906	-	178	145595936	-	Strop_3424	-	hypothetical protein
3371	 69.98	0	3928956..3930854	-	632	145595937	-	Strop_3425	-	DNA primase
3372	 69.99	0	3930964..3932559	-	531	145595938	-	Strop_3426	-	choline/carnitine/betaine transporter
3373	 73.38	+1	3932665..3933498	-	277	145595939	-	Strop_3427	-	siderophore-interacting protein
3374	 73.06	+1	3933508..3934773	-	421	145595940	-	Strop_3428	-	putative deoxyguanosinetriphosphate triphosphohydrolase
3375	 68.79	0	3934910..3937645	-	911	145595941	-	Strop_3429	-	pyruvate phosphate dikinase
3376	 73.28	+1	3937947..3939701	+	584	145595942	-	Strop_3430	-	Beta-N-acetylhexosaminidase
3377	 70.23	0	3940117..3940761	+	214	145595943	-	Strop_3431	-	hypothetical protein
3378	 71.36	0	3940828..3941934	-	368	145595944	-	Strop_3432	-	nifR3 family TIM-barrel protein
3379	 66.23	0	3942071..3943450	-	459	145595945	-	Strop_3433	-	glycyl-tRNA synthetase
3380	 73.00	+1	3943561..3944034	-	157	145595946	-	Strop_3434	-	hypothetical protein
3381	 72.81	+1	3944163..3944504	-	113	145595947	-	Strop_3435	-	antibiotic biosynthesis monooxygenase
3382	 67.83	0	3944532..3944789	+	85	145595948	-	Strop_3436	-	hypothetical protein
3383	 69.64	0	3944844..3945920	+	358	145595949	-	Strop_3437	-	periplasmic solute binding protein
3384	 74.02	+1	3945917..3946678	+	253	145595950	-	Strop_3438	-	ABC transporter related
3385	 71.23	0	3946680..3947555	+	291	145595951	-	Strop_3439	-	ABC-3 protein
3386	 70.19	0	3947593..3947904	+	103	145595952	-	Strop_3440	-	regulatory protein, ArsR
3387	 72.90	+1	3947909..3948838	-	309	145595953	-	Strop_3441	-	alpha/beta hydrolase fold
3388	 69.85	0	3949021..3949617	+	198	145595954	-	Strop_3442	-	hypothetical protein
3389	 75.35	+1	3949724..3951151	+	475	145595955	-	Strop_3443	-	ABC transporter related
3390	 72.81	+1	3951148..3951945	+	265	145595956	-	Strop_3444	-	cobalt transport protein
3391	 69.87	0	3952057..3953493	+	478	145595957	-	Strop_3445	-	6-phosphogluconate dehydrogenase
3392	 69.86	0	3953509..3954321	-	270	145595958	-	Strop_3446	-	undecaprenyl diphosphate synthase
3393	 74.64	+1	3954327..3955166	-	279	145595959	-	Strop_3447	-	DNA repair protein RecO
3394	 67.06	0	3955231..3956493	-	420	145595960	-	Strop_3448	-	acyltransferase 3
3395	 68.33	0	3956552..3957451	-	299	145595961	era	Strop_3449	-	GTP-binding protein Era
3396	 75.13	+1	3957448..3957825	-	125	145595962	-	Strop_3450	-	hypothetical protein
3397	 70.54	0	3957818..3959212	-	464	145595963	-	Strop_3451	-	CBS domain-containing protein
3398	 68.57	0	3959209..3959682	-	157	145595964	-	Strop_3452	-	putative metalloprotease
3399	 68.15	0	3959700..3960842	-	380	145595965	-	Strop_3453	-	PhoH family protein
3400	 75.37	+1	3961335..3962069	-	244	145595966	-	Strop_3454	-	hypothetical protein
3401	 70.51	0	3962134..3963279	-	381	145595967	-	Strop_3455	-	chaperone protein DnaJ
3402	 68.37	0	3963350..3964405	-	351	145595968	hrcA	Strop_3456	-	heat-inducible transcription repressor
69.44	MEAN

3.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.