IslandPath Analysis: Salinispora tropica CNB-440



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.44   STD DEV: 3.32
Salinispora tropica CNB-440, complete genome - 1..5183331
4536 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3272	 69.15	0	3813870..3814877	+	335	145595838	-	Strop_3323	-	aldo/keto reductase
3273	 73.03	+1	3814923..3815834	+	303	145595839	-	Strop_3324	-	hypothetical protein
3274	 70.18	0	3815937..3817760	+	607	145595840	-	Strop_3325	-	hypothetical protein
3275	 70.87	0	3817836..3818477	+	213	145595841	-	Strop_3326	-	lipoate-protein ligase B
3276	 67.82	0	3818496..3819104	-	202	145595842	-	Strop_3327	-	hypothetical protein
3277	 70.08	0	3819328..3820323	+	331	145595843	-	Strop_3328	-	lipoyl synthase
3278	 73.12	+1	3820382..3821992	+	536	145595844	-	Strop_3329	-	hypothetical protein
3279	 66.96	0	3822088..3822777	+	229	145595845	-	Strop_3330	-	hypothetical protein
3280	 69.95	0	3822821..3823216	-	131	145595846	-	Strop_3331	-	RDD domain-containing protein
3281	 65.61	-1	3823496..3824920	+	474	145595847	-	Strop_3332	-	glutamine synthetase, type I
3282	 74.58	+1	3824985..3826487	-	500	145595848	-	Strop_3333	-	hypothetical protein
3283	 74.48	+1	3826557..3828194	+	545	145595849	-	Strop_3334	-	hypothetical protein
3284	 74.15	+1	3828277..3831324	-	1015	145595850	-	Strop_3335	-	glutamate-ammonia ligase adenylyltransferase
3285	 72.70	0	3831321..3832115	-	264	145595851	-	Strop_3336	-	glutamine amidotransferase class-I
3286	 73.55	+1	3832142..3833071	+	309	145595852	-	Strop_3337	-	peptidase U61, LD-carboxypeptidase A
3287	 74.85	+1	3833208..3833696	+	162	145595853	-	Strop_3338	-	hypothetical protein
3288	 68.22	0	3833836..3835191	-	451	145595854	-	Strop_3339	-	glutamine synthetase, type I
3289	 69.56	0	3835390..3837186	+	598	145595855	-	Strop_3340	-	NAD+ synthetase
3290	 70.45	0	3837344..3838189	+	281	145595856	-	Strop_3341	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
3291	 67.28	0	3838198..3838845	+	215	145595857	-	Strop_3342	-	hypothetical protein
3292	 69.53	0	3839041..3839739	-	232	145595858	-	Strop_3343	-	NADPH-dependent F420 reductase
3293	 68.67	0	3839915..3840613	-	232	145595859	-	Strop_3344	-	helix-turn-helix domain-containing protein
3294	 64.84	-1	3840715..3841098	-	127	145595860	-	Strop_3345	-	glyoxalase/bleomycin resistance protein/dioxygenase
3295	 72.50	0	3841186..3841974	+	262	145595861	-	Strop_3346	-	regulatory protein, TetR
3296	 72.77	+1	3842017..3842622	-	201	145595862	-	Strop_3347	-	methyltransferase type 12
3297	 67.86	0	3842822..3843406	-	194	145595863	-	Strop_3348	-	hypothetical protein
3298	 66.02	-1	3845473..3845781	+	102	145595864	-	Strop_3350	-	transposase IS3/IS911 family protein
3299	 67.01	0	3845778..3846641	+	287	145595865	-	Strop_3351	-	integrase catalytic subunit
3300	 64.68	-1	3846805..3847056	-	83	145595866	-	Strop_3352	-	hypothetical protein
3301	 65.81	-1	3847190..3847423	-	77	145595867	-	Strop_3353	-	hypothetical protein
3302	 70.47	0	3848342..3849103	+	253	145595868	-	Strop_3354	-	hypothetical protein
3303	 72.64	0	3849141..3850379	-	412	145595869	-	Strop_3355	-	phosphoglycerate mutase
3304	 70.87	0	3850382..3851119	-	245	145595870	-	Strop_3356	-	hypothetical protein
3305	 72.85	+1	3851109..3851981	-	290	145595871	-	Strop_3357	-	hypothetical protein
3306	 70.18	0	3852040..3852636	-	198	145595872	-	Strop_3358	-	hypothetical protein
3307	 68.87	0	3852633..3853856	-	407	145595873	-	Strop_3359	-	helix-turn-helix domain-containing protein
3308	 71.88	0	3854095..3854766	+	223	145595874	-	Strop_3360	-	hypothetical protein
3309	 66.35	0	3855089..3855406	+	105	145595875	-	Strop_3361	-	hypothetical protein
3310	 73.44	+1	3855433..3856347	-	304	145595876	-	Strop_3362	-	zinc finger SWIM domain-containing protein
3311	 72.91	+1	3856344..3859496	-	1050	145595877	-	Strop_3363	-	non-specific serine/threonine protein kinase
3312	 70.41	0	3859860..3861008	-	382	145595878	-	Strop_3364	-	polysaccharide pyruvyl transferase
3313	 71.30	0	3861140..3861937	-	265	145595879	-	Strop_3365	-	alpha/beta hydrolase fold
3314	 63.26	-1	3862087..3863202	+	371	145595880	-	Strop_3366	-	polysaccharide deacetylase
3315	 64.31	-1	3863395..3864114	+	239	145595881	-	Strop_3367	-	hypothetical protein
3316	 64.96	-1	3864298..3864765	-	155	145595882	-	Strop_3368	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
3317	 66.44	0	3864850..3865287	-	145	145595883	-	Strop_3369	-	hypothetical protein
3318	 73.56	+1	3865396..3867774	-	792	145595884	-	Strop_3370	-	transketolase domain-containing protein
3319	 69.36	0	3867826..3868308	-	160	145595885	-	Strop_3371	-	regulatory protein, MarR
3320	 69.30	0	3868447..3868902	-	151	145595886	-	Strop_3372	-	hypothetical protein
3321	 68.20	0	3869042..3871780	+	912	145595887	aceE	Strop_3373	-	pyruvate dehydrogenase subunit E1
3322	 73.38	+1	3871963..3872409	-	148	145595888	-	Strop_3374	-	cyclase/dehydrase
3323	 68.88	0	3872610..3874007	+	465	145595889	-	Strop_3375	-	glutamyl-tRNA synthetase
3324	 68.36	0	3874262..3874912	+	216	145595890	-	Strop_3376	-	hypothetical protein
3325	 73.49	+1	3875360..3876781	+	473	145595891	-	Strop_3377	-	hypothetical protein
3326	 73.76	+1	3876887..3878056	+	389	145595892	-	Strop_3378	-	acyl transferase domain-containing protein
3327	 71.32	0	3878097..3879041	+	314	145595893	-	Strop_3379	-	3-oxoacyl-(acyl carrier protein) synthase III
3328	 63.33	-1	3879113..3879352	+	79	145595894	-	Strop_3380	-	phosphopantetheine-binding
3329	 71.64	0	3879355..3880581	+	408	145595895	-	Strop_3381	-	beta-ketoacyl synthase
3330	 72.77	+1	3880604..3882028	+	474	145595896	-	Strop_3382	-	propionyl-CoA carboxylase
3331	 72.57	0	3882146..3882823	+	225	145595897	-	Strop_3383	-	hypothetical protein
3332	 72.97	+1	3882858..3884585	-	575	145595898	-	Strop_3384	-	glycoside hydrolase family 3 protein
3333	 72.76	+1	3884692..3885183	-	163	145595899	-	Strop_3385	-	hypothetical protein
3334	 68.79	0	3885495..3885824	+	109	145595900	-	Strop_3386	-	hypothetical protein
3335	 71.88	0	3886072..3886992	+	306	145595901	-	Strop_3387	-	alpha/beta hydrolase fold
3336	 73.41	+1	3887101..3889221	+	706	145595902	-	Strop_3388	-	hypothetical protein
3337	 68.08	0	3889370..3890287	+	305	145595903	-	Strop_3389	-	cation diffusion facilitator family transporter
3338	 69.37	0	3890599..3891669	+	356	145595904	-	Strop_3390	-	hypothetical protein
3339	 65.29	-1	3891746..3892108	-	120	145595905	-	Strop_3391	-	anti-anti-sigma factor
3340	 68.85	0	3892652..3893200	+	182	145595906	-	Strop_3392	-	DSBA oxidoreductase
3341	 75.84	+1	3893312..3896014	-	900	145595907	-	Strop_3393	-	regulatory protein, LuxR
3342	 74.35	+1	3896591..3897775	+	394	145595908	-	Strop_3395	-	alcohol dehydrogenase
3343	 73.68	+1	3897788..3898957	+	389	145595909	-	Strop_3396	-	saccharopine dehydrogenase (NAD(+), L-glutamate-forming)
3344	 69.94	0	3899053..3900336	+	427	145595910	-	Strop_3397	-	seryl-tRNA synthetase
3345	 70.96	0	3900636..3901637	+	333	145595911	-	Strop_3398	-	alcohol dehydrogenase
3346	 68.39	0	3901724..3903175	-	483	145595912	-	Strop_3399	-	polymorphic outer membrane protein
3347	 70.42	0	3903392..3904537	+	381	145595913	-	Strop_3400	-	peptidase M50
3348	 69.75	0	3904718..3905755	-	345	145595914	-	Strop_3401	-	hypothetical protein
3349	 67.04	0	3905755..3906024	-	89	145595915	-	Strop_3402	-	hypothetical protein
3350	 72.45	0	3906311..3907330	-	339	145595916	-	Strop_3403	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
3351	 68.67	0	3907354..3908001	+	215	145595917	-	Strop_3404	-	cupin 2 domain-containing protein
3352	 67.32	0	3908125..3909039	+	304	145595918	-	Strop_3405	-	aldo/keto reductase
3353	 65.42	-1	3909243..3910682	+	479	145595919	-	Strop_3406	-	parallel beta-helix repeat-containing protein
3354	 64.03	-1	3910860..3912224	+	454	145595920	-	Strop_3407	-	hypothetical protein
3355	 64.36	-1	3912499..3913884	-	461	145595921	-	Strop_3408	-	polymorphic outer membrane protein
3356	 62.27	-2	3914159..3914545	-	128	145595922	-	Strop_3409	-	glyoxalase/bleomycin resistance protein/dioxygenase
3357	 60.26	-2	3914545..3914934	-	129	145595923	-	Strop_3410	-	regulatory protein, ArsR
3358	 65.93	-1	3915180..3916679	+	499	145595924	-	Strop_3411	-	amidase
3359	 67.52	0	3917000..3917587	-	195	145595925	-	Strop_3412	-	hypothetical protein
3360	 64.93	-1	3917897..3918241	-	114	145595926	-	Strop_3413	-	hypothetical protein
3361	 63.60	-1	3919181..3920548	+	455	145595927	-	Strop_3415	-	hypothetical protein
3362	 72.94	+1	3920642..3920944	+	100	145595928	-	Strop_3416	-	hypothetical protein
3363	 66.29	0	3920988..3921251	+	87	145595929	-	Strop_3417	-	hypothetical protein
3364	 73.27	+1	3921508..3922749	-	413	145595930	-	Strop_3418	-	amine oxidase
3365	 70.54	0	3922739..3924883	-	714	145595931	-	Strop_3419	-	MMPL domain-containing protein
3366	 68.54	0	3925378..3925698	+	106	145595932	-	Strop_3420	-	hypothetical protein
3367	 66.54	0	3925658..3926467	-	269	145595933	-	Strop_3421	-	ABC-2 type transporter
3368	 71.08	0	3926480..3927295	-	271	145595934	-	Strop_3422	-	ABC-2 type transporter
3369	 68.70	0	3927331..3928263	-	310	145595935	-	Strop_3423	-	ABC transporter related
3370	 74.30	+1	3928370..3928906	-	178	145595936	-	Strop_3424	-	hypothetical protein
3371	 69.98	0	3928956..3930854	-	632	145595937	-	Strop_3425	-	DNA primase
69.44	MEAN

3.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.