IslandPathversion 1.0

IslandPath Analysis: Salinispora tropica CNB-440



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.44 STD DEV: 3.32
Salinispora tropica CNB-440, complete genome - 1..5183331
4536 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2696	 75.04	+1	3083472..3086780	+	1102	145595262	-	Strop_2737	-	transcriptional activator domain-containing protein
2697	 65.72	-1	3086782..3088467	-	561	145595263	-	Strop_2738	-	peptidase M16 domain-containing protein
2698	 66.56	0	3088464..3089408	-	314	145595264	-	Strop_2739	-	hypothetical protein
2699	 69.55	0	3089529..3090707	-	392	145595265	-	Strop_2740	-	radical SAM domain-containing protein
2700	 68.65	0	3090779..3091231	-	150	145595266	-	Strop_2741	-	hemerythrin HHE cation binding domain-containing protein
2701	 67.32	0	3091248..3092465	+	405	145595267	-	Strop_2742	-	zinc finger SWIM domain-containing protein
2702	 63.84	-1	3093472..3093789	-	105	145595268	-	Strop_2744	-	hypothetical protein
2703	 67.53	0	3093870..3094334	-	154	145595269	-	Strop_2745	-	hypothetical protein
2704	 68.44	0	3094475..3095095	+	206	145595270	-	Strop_2746	-	hypothetical protein
2705	 69.97	0	3095090..3095785	-	231	145595271	-	Strop_2747	-	hypothetical protein
2706	 64.15	-1	3095976..3096332	-	118	145595272	-	Strop_2748	-	hypothetical protein
2707	 68.59	0	3096728..3097609	+	293	145595273	-	Strop_2749	-	hypothetical protein
2708	 67.68	0	3098059..3098751	+	230	145595274	-	Strop_2750	-	hypothetical protein
2709	 66.67	0	3098829..3098990	+	53	145595275	-	Strop_2751	-	transcriptional regulator-like protein
2710	 68.23	0	3099667..3100563	+	298	145595276	-	Strop_2753	-	transposase
2711	 70.81	0	3100609..3101862	-	417	145595277	-	Strop_2754	-	major facilitator transporter
2712	 64.01	-1	3101859..3102536	-	225	145595278	-	Strop_2755	-	regulatory protein, ArsR
2713	 63.49	-1	3102904..3103218	+	104	145595279	-	Strop_2756	-	hypothetical protein
2714	 69.59	0	3103236..3104537	+	433	145595280	-	Strop_2757	-	histidine kinase, dimerisation and phosphoacceptor region
2715	 67.12	0	3104501..3105163	+	220	145595281	-	Strop_2758	-	response regulator receiver
2716	 70.41	0	3105244..3107808	-	854	145595282	-	Strop_2759	-	hypothetical protein
2717	 69.75	0	3107805..3108614	-	269	145595283	-	Strop_2760	-	ABC transporter related
2718	 72.39	0	3108746..3111577	-	943	145595284	-	Strop_2761	-	regulatory protein, LuxR
2719	 64.26	-1	3111964..3112296	+	110	145595285	-	Strop_2762	-	hypothetical protein
2720	 70.53	0	3112454..3113230	-	258	145595286	-	Strop_2763	-	thioesterase
2721	 72.71	0	3113280..3114719	-	479	145595287	-	Strop_2764	-	propionyl-CoA carboxylase
2722	 71.11	0	3114953..3116707	-	584	145595288	-	Strop_2765	-	major facilitator transporter
2723	 70.02	0	3116781..3117377	+	198	145595289	-	Strop_2766	-	regulatory protein, TetR
2724	 69.29	0	3117486..3117752	-	88	145595290	-	Strop_2767	-	hypothetical protein
2725	 70.65	0	3117970..3139602	-	7210	145595291	-	Strop_2768	-	beta-ketoacyl synthase
2726	 73.25	+1	3139622..3139849	-	75	145595292	-	Strop_2769	-	hypothetical protein
2727	 69.02	0	3139855..3141042	-	395	145595293	-	Strop_2770	-	cytochrome P450
2728	 70.68	0	3141398..3142744	+	448	145595294	-	Strop_2771	-	hypothetical protein
2729	 73.59	+1	3142772..3144028	+	418	145595295	-	Strop_2772	-	aminotransferase, class I and II
2730	 69.51	0	3144025..3144972	+	315	145595296	-	Strop_2773	-	hypothetical protein
2731	 72.75	0	3144999..3146543	+	514	145595297	-	Strop_2774	-	AMP-dependent synthetase and ligase
2732	 71.79	0	3146609..3148246	-	545	145595298	-	Strop_2775	-	AMP-dependent synthetase and ligase
2733	 62.25	-2	3148363..3148611	+	82	145595299	-	Strop_2776	-	hypothetical protein
2734	 69.71	0	3148774..3149694	-	306	145595300	-	Strop_2777	-	proline-specific peptidase
2735	 70.26	0	3149691..3160826	-	3711	145595301	-	Strop_2778	-	beta-ketoacyl synthase
2736	 71.06	0	3160885..3165639	-	1584	145595302	-	Strop_2779	-	acyl transferase domain-containing protein
2737	 68.69	0	3165680..3174781	-	3033	145595303	-	Strop_2780	-	beta-ketoacyl synthase
2738	 69.73	0	3174833..3185224	-	3463	145595304	-	Strop_2781	-	beta-ketoacyl synthase
2739	 69.33	0	3185638..3186312	-	224	145595305	-	Strop_2782	-	hypothetical protein
2740	 65.80	-1	3186353..3186697	-	114	145595306	-	Strop_2783	-	hypothetical protein
2741	 70.20	0	3187115..3187651	-	178	145595307	-	Strop_2785	-	hypothetical protein
2742	 67.45	0	3187819..3189087	-	422	145595308	-	Strop_2786	-	cytochrome P450
2743	 70.58	0	3189084..3190640	-	518	145595309	-	Strop_2787	-	AMP-dependent synthetase and ligase
2744	 70.34	0	3190664..3191398	-	244	145595310	-	Strop_2788	-	hypothetical protein
2745	 71.91	0	3191395..3192099	-	234	145595311	-	Strop_2789	-	DSBA oxidoreductase
2746	 71.14	0	3192096..3193034	-	312	145595312	-	Strop_2790	-	hypothetical protein
2747	 72.12	0	3193050..3193838	-	262	145595313	-	Strop_2791	-	alpha/beta hydrolase fold
2748	 76.26	+2	3193835..3194803	-	322	145595314	-	Strop_2792	-	beta-ketoacyl synthase
2749	 73.84	+1	3194800..3195915	-	371	145595315	-	Strop_2793	-	beta-ketoacyl synthase
2750	 74.46	+1	3195893..3197047	-	384	145595316	-	Strop_2794	-	beta-ketoacyl synthase
2751	 70.56	0	3197044..3198249	-	401	145595317	-	Strop_2795	-	beta-ketoacyl synthase
2752	 63.92	-1	3198254..3198508	-	84	145595318	-	Strop_2796	-	phosphopantetheine-binding
2753	 71.07	0	3198505..3199095	-	196	145595319	-	Strop_2797	-	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ
2754	 73.43	+1	3199088..3199516	-	142	145595320	-	Strop_2798	-	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ
2755	 68.83	0	3199513..3200253	-	246	145595321	-	Strop_2799	-	3-oxoacyl-(acyl-carrier-protein) reductase
2756	 72.20	0	3200337..3201602	-	421	145595322	-	Strop_2800	-	L-carnitine dehydratase/bile acid-inducible protein F
2757	 71.70	0	3201608..3202759	-	383	145595323	-	Strop_2801	-	acetyl-CoA acetyltransferase
2758	 66.16	0	3202764..3202961	-	65	145595324	-	Strop_2802	-	hypothetical protein
2759	 72.36	0	3203139..3204737	+	532	145595325	-	Strop_2803	-	AMP-dependent synthetase and ligase
2760	 73.33	+1	3204734..3206128	+	464	145595326	-	Strop_2804	-	FAD dependent oxidoreductase
2761	 68.83	0	3206159..3206389	+	76	145595327	-	Strop_2805	-	phosphopantetheine-binding
2762	 72.28	0	3206444..3210397	+	1317	145595328	-	Strop_2806	-	amino acid adenylation domain-containing protein
2763	 72.06	0	3210483..3211484	-	333	145595329	-	Strop_2807	-	hypothetical protein
2764	 71.86	0	3211652..3212479	+	275	145595330	-	Strop_2808	-	methyltransferase type 11
2765	 72.82	+1	3212541..3213548	+	335	145595331	-	Strop_2809	-	hypothetical protein
2766	 70.02	0	3213580..3215070	-	496	145595332	-	Strop_2810	-	FAD dependent oxidoreductase
2767	 66.48	0	3215119..3215655	-	178	145595333	-	Strop_2811	-	glyoxalase/bleomycin resistance protein/dioxygenase
2768	 70.23	0	3215729..3217105	+	458	145595334	-	Strop_2812	-	hypothetical protein
2769	 70.43	0	3217110..3218252	+	380	145595335	-	Strop_2813	-	acyl-CoA dehydrogenase domain-containing protein
2770	 75.19	+1	3218277..3219344	+	355	145595336	-	Strop_2814	-	acyl-CoA dehydrogenase domain-containing protein
2771	 71.44	0	3219365..3220390	+	341	145595337	-	Strop_2815	-	O-methyltransferase family protein
2772	 73.37	+1	3220387..3221997	+	536	145595338	-	Strop_2816	-	AMP-dependent synthetase and ligase
2773	 71.85	0	3222004..3222756	-	250	145595339	-	Strop_2817	-	thioesterase
2774	 70.48	0	3222756..3223883	-	375	145595340	-	Strop_2818	-	thiazolinyl imide reductase
2775	 74.47	+1	3223880..3224956	-	358	145595341	-	Strop_2819	-	saccharopine dehydrogenase
2776	 71.49	0	3224953..3230157	-	1734	145595342	-	Strop_2820	-	amino acid adenylation domain-containing protein
2777	 71.26	0	3230154..3236678	-	2174	145595343	-	Strop_2821	-	amino acid adenylation domain-containing protein
2778	 71.83	0	3236877..3237632	+	251	145595344	-	Strop_2822	-	4'-phosphopantetheinyl transferase
2779	 68.44	0	3237729..3239423	+	564	145595345	-	Strop_2823	-	EmrB/QacA family drug resistance transporter
2780	 66.67	0	3239497..3239919	-	140	145595346	-	Strop_2824	-	glyoxalase/bleomycin resistance protein/dioxygenase
2781	 70.61	0	3240153..3241445	-	430	145595347	-	Strop_2825	-	cytochrome P450
2782	 68.59	0	3241519..3242769	+	416	145595348	-	Strop_2826	-	condensation domain-containing protein
2783	 70.28	0	3242818..3243177	+	119	145595349	-	Strop_2827	-	hypothetical protein
2784	 67.12	0	3243578..3244018	+	146	145595350	-	Strop_2828	-	hypothetical protein
2785	 69.16	0	3244612..3245814	+	400	145595351	-	Strop_2829	-	cytochrome P450
2786	 72.06	0	3245859..3246878	-	339	145595352	-	Strop_2830	-	O-methyltransferase family protein
2787	 66.25	0	3246880..3247845	-	321	145595353	-	Strop_2831	-	hypothetical protein
2788	 71.65	0	3247954..3249216	+	420	145595354	-	Strop_2832	-	condensation domain-containing protein
2789	 70.38	0	3249424..3250527	+	367	145595355	-	Strop_2833	-	alkanesulfonate monooxygenase
2790	 70.95	0	3250524..3251177	+	217	145595356	-	Strop_2834	-	NADPH-dependent FMN reductase
2791	 64.02	-1	3251264..3251527	+	87	145595357	-	Strop_2835	-	phosphopantetheine-binding
2792	 72.27	0	3251682..3252770	-	362	145595358	-	Strop_2836	-	methyltransferase type 11
2793	 71.42	0	3252839..3254038	+	399	145595359	-	Strop_2837	-	acyl-CoA dehydrogenase type 2
2794	 69.75	0	3254276..3255085	+	269	145595360	-	Strop_2838	-	short-chain dehydrogenase/reductase SDR
2795	 66.38	0	3255162..3255509	-	115	145595361	-	Strop_2839	-	glyoxalase/bleomycin resistance protein/dioxygenase
69.44	MEAN

3.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.