IslandPath Analysis: Salinispora tropica CNB-440



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.44   STD DEV: 3.32
Salinispora tropica CNB-440, complete genome - 1..5183331
4536 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1999	 70.23	0	2302885..2303922	+	345	145594565	-	Strop_2031	-	hypothetical protein
2000	 69.19	0	2304044..2305627	+	527	145594566	-	Strop_2032	-	cell wall anchor domain-containing protein
2001	 64.79	-1	2305624..2307222	+	532	145594567	-	Strop_2033	-	periplasmic solute binding protein
2002	 69.32	0	2307219..2308199	+	326	145594568	-	Strop_2034	-	hypothetical protein
2003	 68.28	0	2308196..2308939	+	247	145594569	-	Strop_2035	-	ABC transporter related
2004	 63.26	-1	2308939..2309877	+	312	145594570	-	Strop_2036	-	ABC-3 protein
2005	 67.28	0	2310135..2310782	+	215	145594571	-	Strop_2037	-	hypothetical protein
2006	 66.03	-1	2310788..2311420	+	210	145594572	-	Strop_2038	-	hypothetical protein
2007	 71.59	0	2311606..2312214	-	202	145594573	-	Strop_2039	-	class I peptide chain release factor
2008	 72.22	0	2312211..2313398	-	395	145594574	-	Strop_2040	-	hypothetical protein
2009	 67.47	0	2313405..2313653	-	82	145594575	-	Strop_2041	-	hypothetical protein
2010	 67.86	0	2314091..2314675	+	194	145594576	-	Strop_2042	-	hypothetical protein
2011	 64.85	-1	2315040..2316305	+	421	145594577	-	Strop_2043	-	Serine-type D-Ala-D-Ala carboxypeptidase
2012	 61.61	-2	2316329..2316901	+	190	145594578	-	Strop_2044	-	GCN5-related N-acetyltransferase
2013	 63.95	-1	2316966..2317922	-	318	145594579	-	Strop_2045	-	sphingomyelin phosphodiesterase
2014	 65.70	-1	2318023..2319675	-	550	145594580	-	Strop_2046	-	glucose/ribitol dehydrogenase
2015	 65.29	-1	2319861..2320295	+	144	145594581	-	Strop_2047	-	regulatory protein, ArsR
2016	 66.67	0	2320292..2320768	+	158	145594582	-	Strop_2048	-	activator of Hsp90 ATPase 1 family protein
2017	 64.01	-1	2320859..2321272	+	137	145594583	-	Strop_2049	-	glyoxalase/bleomycin resistance protein/dioxygenase
2018	 66.30	0	2321319..2321588	+	89	145594584	-	Strop_2050	-	hypothetical protein
2019	 66.67	0	2322355..2322681	+	108	145594585	-	Strop_2051	-	hypothetical protein
2020	 66.19	0	2322850..2324325	+	491	145594586	-	Strop_2052	-	glycerophosphoryl diester phosphodiesterase
2021	 66.83	0	2324345..2324950	+	201	145594587	-	Strop_2053	-	ferric-uptake regulator
2022	 68.64	0	2324947..2327223	+	758	145594588	-	Strop_2054	-	catalase/peroxidase HPI
2023	 68.86	0	2327514..2328974	+	486	145594589	-	Strop_2055	-	monooxygenase, FAD-binding
2024	 64.73	-1	2329248..2330021	-	257	145594590	-	Strop_2056	-	hypothetical protein
2025	 71.00	0	2330264..2331139	-	291	145594591	-	Strop_2057	-	helix-turn-helix domain-containing protein
2026	 68.09	0	2331322..2333214	-	630	145594592	-	Strop_2058	-	transcriptional activator domain-containing protein
2027	 63.43	-1	2333272..2333580	+	102	145594593	-	Strop_2059	-	hypothetical protein
2028	 70.33	0	2333686..2334231	+	181	145594594	-	Strop_2060	-	hypothetical protein
2029	 65.32	-1	2334733..2335104	-	123	145594595	-	Strop_2062	-	hypothetical protein
2030	 66.51	0	2335675..2336307	+	210	145594596	-	Strop_2063	-	ROK family protein
2031	 67.22	0	2336510..2338315	-	601	145594597	-	Strop_2064	-	carnitine O-acetyltransferase
2032	 65.12	-1	2338437..2339279	-	280	145594598	-	Strop_2065	-	hypothetical protein
2033	 71.35	0	2339329..2339712	-	127	145594599	-	Strop_2066	-	hypothetical protein
2034	 68.14	0	2340071..2341561	-	496	145594600	-	Strop_2068	-	major facilitator transporter
2035	 71.66	0	2341653..2342273	+	206	145594601	-	Strop_2069	-	regulatory protein, TetR
2036	 63.77	-1	2342870..2343283	+	137	145594602	-	Strop_2070	-	cold-shock protein, DNA-binding
2037	 68.95	0	2343303..2344529	+	408	145594603	-	Strop_2071	-	hypothetical protein
2038	 65.79	-1	2344552..2345805	-	417	145594604	-	Strop_2072	-	major facilitator transporter
2039	 69.34	0	2345879..2347189	+	436	145594605	-	Strop_2073	-	von Willebrand factor, type A
2040	 72.22	0	2347189..2347962	+	257	145594606	-	Strop_2074	-	hypothetical protein
2041	 72.21	0	2348028..2349272	-	414	145594607	-	Strop_2075	-	hypothetical protein
2042	 73.28	+1	2349332..2350450	+	372	145594608	-	Strop_2076	-	oxidoreductase FAD-binding subunit
2043	 66.23	0	2350466..2351608	+	380	145594609	-	Strop_2077	-	fatty acid desaturase
2044	 72.75	0	2351640..2352773	-	377	145594610	-	Strop_2078	-	glycosyl transferase, group 1
2045	 69.10	0	2352777..2353886	-	369	145594611	-	Strop_2079	-	glycosyl transferase family protein
2046	 71.95	0	2354037..2355380	+	447	145594612	-	Strop_2080	-	glycosyl transferase, group 1
2047	 69.48	0	2355377..2356939	+	520	145594613	-	Strop_2081	-	glycosyl transferase family protein
2048	 71.11	0	2357022..2358710	-	562	145594614	-	Strop_2082	-	acyl-CoA synthetase
2049	 61.02	-2	2358813..2358989	-	58	145594615	-	Strop_2083	-	hypothetical protein
2050	 71.89	0	2359094..2359993	-	299	145594616	-	Strop_2084	-	hypothetical protein
2051	 69.57	0	2359990..2360574	-	194	145594617	-	Strop_2085	-	rhodanese domain-containing protein
2052	 70.77	0	2360650..2362062	-	470	145594618	-	Strop_2086	-	beta-lactamase domain-containing protein
2053	 64.07	-1	2362194..2362463	-	89	145594619	-	Strop_2087	-	hypothetical protein
2054	 69.02	0	2362511..2363446	+	311	145594620	-	Strop_2088	-	hypothetical protein
2055	 72.22	0	2363322..2363969	-	215	145594621	-	Strop_2089	-	diguanylate cyclase
2056	 65.42	-1	2364206..2364445	+	79	145594622	-	Strop_2090	-	hypothetical protein
2057	 69.37	0	2364564..2365451	+	295	145594623	-	Strop_2091	-	hypothetical protein
2058	 66.54	0	2365537..2366337	+	266	145594624	-	Strop_2092	-	hypothetical protein
2059	 69.10	0	2366362..2367798	-	478	145594625	glyA	Strop_2093	-	serine hydroxymethyltransferase
2060	 72.11	0	2368034..2368915	+	293	145594626	-	Strop_2094	-	metallophosphoesterase
2061	 71.75	0	2368946..2370028	+	360	145594627	-	Strop_2095	-	DNA primase, small subunit
2062	 72.34	0	2369975..2370520	-	181	145594628	-	Strop_2096	-	AsnC/Lrp family regulatory protein
2063	 71.54	0	2370626..2371774	+	382	145594629	-	Strop_2097	-	pyruvate dehydrogenase (acetyl-transferring)
2064	 70.55	0	2371774..2372778	+	334	145594630	-	Strop_2098	-	transketolase, central region
2065	 72.50	0	2372778..2374079	+	433	145594631	-	Strop_2099	-	branched-chain alpha-keto acid dehydrogenase subunit E2
2066	 66.82	0	2374325..2375608	+	427	145594632	-	Strop_2100	-	ErfK/YbiS/YcfS/YnhG family protein
2067	 71.16	0	2375691..2376068	-	125	145594633	-	Strop_2101	-	peptidylprolyl isomerase, FKBP-type
2068	 67.85	0	2376207..2376800	-	197	145594634	-	Strop_2102	-	DoxX family protein
2069	 71.99	0	2376888..2377619	-	243	145594635	-	Strop_2103	-	hypothetical protein
2070	 71.43	0	2377703..2378374	+	223	145594636	-	Strop_2104	-	nitroreductase
2071	 64.01	-1	2379412..2379750	-	112	145594637	-	Strop_2105	-	hypothetical protein
2072	 71.26	0	2380040..2381779	-	579	145594638	-	Strop_2106	-	DEAD/DEAH box helicase domain-containing protein
2073	 71.96	0	2382060..2383022	+	320	145594639	-	Strop_2107	-	hypothetical protein
2074	 70.20	0	2383027..2384637	+	536	145594640	-	Strop_2108	-	asparagine synthase (glutamine-hydrolyzing)
2075	 68.54	0	2384665..2385516	+	283	145594641	-	Strop_2109	-	transcription activator, effector binding
2076	 66.39	0	2385615..2387060	-	481	145594642	-	Strop_2110	-	LVIVD repeat-containing protein
2077	 68.60	0	2387308..2387979	+	223	145594643	-	Strop_2111	-	hypothetical protein
2078	 70.57	0	2388013..2389446	-	477	145594644	-	Strop_2112	-	protein kinase
2079	 73.48	+1	2389567..2390799	+	410	145594645	-	Strop_2113	-	glutamate--cysteine ligase, GCS2
2080	 71.09	0	2390796..2392130	+	444	145594646	-	Strop_2114	-	hypothetical protein
2081	 72.93	+1	2392141..2392890	+	249	145594647	-	Strop_2115	-	hypothetical protein
2082	 68.63	0	2392924..2393889	+	321	145594648	-	Strop_2116	-	hypothetical protein
2083	 68.72	0	2394125..2394709	+	194	145594649	-	Strop_2117	-	hypothetical protein
2084	 69.57	0	2394839..2396149	-	436	145594650	-	Strop_2118	-	Na+/H+ antiporter NhaA
2085	 72.82	+1	2396617..2397834	+	405	145594651	-	Strop_2119	-	glycosyl transferase, group 1
2086	 71.43	0	2397954..2398604	+	216	145594652	-	Strop_2120	-	hypothetical protein
2087	 69.88	0	2398808..2399398	+	196	145594653	-	Strop_2121	-	hypothetical protein
2088	 72.07	0	2399429..2400595	-	388	145594654	-	Strop_2122	-	L-carnitine dehydratase/bile acid-inducible protein F
2089	 66.38	0	2400830..2401870	+	346	145594655	-	Strop_2123	-	integral membrane protein TerC
2090	 68.36	0	2402109..2403410	+	433	145594656	-	Strop_2124	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2091	 73.21	+1	2403470..2404447	-	325	145594657	-	Strop_2125	-	hypothetical protein
2092	 70.55	0	2404717..2405025	+	102	145594658	-	Strop_2126	-	hypothetical protein
2093	 71.97	0	2405150..2405620	+	156	145594659	-	Strop_2127	-	hypothetical protein
2094	 68.13	0	2405653..2406540	-	295	145594660	-	Strop_2128	-	hypothetical protein
2095	 69.93	0	2406847..2407275	-	142	145594661	-	Strop_2129	-	hypothetical protein
2096	 67.33	0	2407468..2408226	+	252	145594662	-	Strop_2130	-	response regulator receiver
2097	 72.31	0	2408231..2409682	+	483	145594663	-	Strop_2131	-	ATPase domain-containing protein
2098	 71.53	0	2409728..2411887	+	719	145594664	-	Strop_2132	-	glycosyl transferase family protein
69.44	MEAN

3.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.