IslandPath Analysis: Salinispora tropica CNB-440



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.44   STD DEV: 3.32
Salinispora tropica CNB-440, complete genome - 1..5183331
4536 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
71	 69.05	0	79700..79951	-	83	145592637	-	Strop_0071	-	hypothetical protein
72	 65.28	-1	80381..81247	+	288	145592638	-	Strop_0072	-	regulatory protein GntR, HTH
73	 71.49	0	81244..81948	+	234	145592639	-	Strop_0073	-	HAD family hydrolase
74	 69.21	0	82600..82953	-	117	145592640	-	Strop_0074	-	hypothetical protein
75	 63.23	-1	83109..83399	-	96	145592641	-	Strop_0075	-	hypothetical protein
76	 70.39	0	83609..84655	-	348	145592642	-	Strop_0076	-	hypothetical protein
77	 67.47	0	84655..85152	-	165	145592643	-	Strop_0077	-	ECF subfamily RNA polymerase sigma-24 factor
78	 68.35	0	85513..86937	-	474	145592644	-	Strop_0078	-	aldehyde dehydrogenase
79	 62.73	-2	87100..87633	-	177	145592645	-	Strop_0079	-	hypothetical protein
80	 62.68	-2	87657..88007	-	116	145592646	-	Strop_0080	-	hypothetical protein
81	 62.39	-2	88254..89795	+	513	145592647	-	Strop_0081	-	amidohydrolase
82	 68.74	0	90293..90871	-	192	145592648	-	Strop_0082	-	GCN5-related N-acetyltransferase
83	 66.67	0	91285..92154	-	289	145592649	-	Strop_0083	-	alpha/beta hydrolase fold
84	 66.46	0	92818..93297	+	159	145592650	-	Strop_0084	-	GCN5-related N-acetyltransferase
85	 71.04	0	93366..94256	+	296	145592651	-	Strop_0085	-	luciferase family protein
86	 72.55	0	94348..94908	-	186	145592652	-	Strop_0086	-	phosphoribosyltransferase
87	 69.42	0	95005..95730	+	241	145592653	-	Strop_0087	-	rare lipoprotein A
88	 70.74	0	95829..96956	+	375	145592654	-	Strop_0088	-	stage II sporulation E family protein
89	 67.75	0	97039..98892	+	617	145592655	-	Strop_0089	-	acyl-CoA dehydrogenase domain-containing protein
90	 68.15	0	99117..99386	+	89	145592656	-	Strop_0090	-	hypothetical protein
91	 72.44	0	99421..99957	-	178	145592657	-	Strop_0091	-	putative phosphohistidine phosphatase, SixA
92	 67.20	0	100075..101013	-	312	145592658	-	Strop_0092	-	AraC family transcriptional regulator
93	 70.00	0	101108..101827	+	239	145592659	-	Strop_0093	-	ThiJ/PfpI domain-containing protein
94	 66.88	0	101824..102300	+	158	145592660	-	Strop_0094	-	hypothetical protein
95	 68.09	0	102297..102578	+	93	145592661	-	Strop_0095	-	hypothetical protein
96	 69.17	0	102658..103335	-	225	145592662	-	Strop_0096	-	hemolysin III family channel protein
97	 74.90	+1	103387..104163	+	258	145592663	-	Strop_0097	-	allophanate hydrolase subunit 1
98	 74.23	+1	104160..105098	+	312	145592664	-	Strop_0098	-	urea amidolyase related protein
99	 72.27	0	105082..105849	+	255	145592665	-	Strop_0099	-	LamB/YcsF family protein
100	 72.05	0	105874..107712	-	612	145592666	-	Strop_0100	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
101	 68.81	0	107799..108125	-	108	145592667	-	Strop_0101	-	hypothetical protein
102	 65.23	-1	108532..109299	+	255	145592668	-	Strop_0102	-	hypothetical protein
103	 69.79	0	109290..109481	+	63	145592669	-	Strop_0103	-	hypothetical protein
104	 62.47	-2	109619..111118	+	499	145592670	-	Strop_0104	-	Eco57I restriction endonuclease
105	 57.14	-2	111115..112059	+	314	145592671	-	Strop_0105	-	Type II site-specific deoxyribonuclease
106	 74.88	+1	112208..115009	-	933	145592672	-	Strop_0106	-	hypothetical protein
107	 70.56	0	115228..116691	-	487	145592673	-	Strop_0107	-	dehydrogenase catalytic domain-containing protein
108	 69.29	0	116697..117686	-	329	145592674	-	Strop_0108	-	transketolase, central region
109	 68.62	0	117686..118861	-	391	145592675	-	Strop_0109	-	pyruvate dehydrogenase (acetyl-transferring)
110	 71.29	0	119237..119755	+	172	145592676	-	Strop_0110	-	hypothetical protein
111	 60.32	-2	119985..120362	+	125	145592677	-	Strop_0111	-	hypothetical protein
112	 71.74	0	120504..121724	-	406	145592678	-	Strop_0112	-	hypothetical protein
113	 66.67	0	122017..123858	+	613	145592679	-	Strop_0113	-	chaperone protein DnaK
114	 72.43	0	123902..124699	+	265	145592680	-	Strop_0114	-	GrpE protein
115	 70.42	0	124781..125953	+	390	145592681	-	Strop_0115	-	chaperone protein DnaJ
116	 69.39	0	125997..126437	+	146	145592682	-	Strop_0116	-	MerR family transcriptional regulator
117	 67.18	0	126540..126734	+	64	145592683	-	Strop_0117	-	hypothetical protein
118	 68.52	0	126877..127308	-	143	145592684	-	Strop_0118	-	hypothetical protein
119	 70.15	0	127487..128692	-	401	145592685	-	Strop_0119	-	sodium/hydrogen exchanger
120	 69.71	0	128698..129288	-	196	145592686	-	Strop_0120	-	TrkA domain-containing protein
121	 70.41	0	129372..131963	+	863	145592687	-	Strop_0121	-	ATPase
122	 67.29	0	132049..133014	+	321	145592688	-	Strop_0122	-	hypothetical protein
123	 70.96	0	133124..133729	+	201	145592689	-	Strop_0123	-	hypothetical protein
124	 68.02	0	133737..134546	+	269	145592690	-	Strop_0124	-	short-chain dehydrogenase/reductase SDR
125	 68.70	0	134691..135230	+	179	145592691	pyrE	Strop_0125	-	orotate phosphoribosyltransferase
126	 67.20	0	135288..135665	+	125	145592692	-	Strop_0126	-	regulatory protein, ArsR
127	 65.97	-1	135831..136544	-	237	145592693	-	Strop_0127	-	hypothetical protein
128	 67.18	0	136796..138352	-	518	145592694	-	Strop_0128	-	cell wall anchor domain-containing protein
129	 75.12	+1	138537..138749	-	70	145592695	-	Strop_0129	-	hypothetical protein
130	 65.10	-1	139113..140135	+	340	145592696	-	Strop_0130	-	fructose-bisphosphate aldolase
131	 72.36	0	140250..140741	+	163	145592697	-	Strop_0131	-	hypothetical protein
132	 72.35	0	140810..142411	-	533	145592698	-	Strop_0132	-	ATPase involved in chromosome partitioning-like protein
133	 71.99	0	142474..144897	+	807	145592699	-	Strop_0133	-	adenylosuccinate synthase
134	 74.26	+1	144964..146214	+	416	145592700	-	Strop_0134	-	phosphoribosylamine--glycine ligase
135	 73.84	+1	146253..147590	-	445	145592701	-	Strop_0135	-	major facilitator transporter
136	 70.62	0	147749..148963	-	404	145592702	-	Strop_0136	-	acyl-CoA dehydrogenase domain-containing protein
137	 64.02	-1	148966..149418	-	150	145592703	-	Strop_0137	-	sterol-binding domain-containing protein
138	 72.30	0	149485..150141	+	218	145592704	-	Strop_0138	-	TetR family transcriptional regulator
139	 72.65	0	150162..150779	-	205	145592705	-	Strop_0139	-	hypothetical protein
140	 74.38	+1	150848..151741	-	297	145592706	-	Strop_0140	-	dehydratase
141	 72.20	0	151741..153096	-	451	145592707	fabG	Strop_0141	-	3-ketoacyl-(acyl-carrier-protein) reductase
142	 72.24	0	153150..154442	+	430	145592708	-	Strop_0142	-	acetyl-CoA acetyltransferase
143	 69.41	0	154472..154981	-	169	145592709	-	Strop_0143	-	hypothetical protein
144	 68.32	0	155490..156032	+	180	145592710	-	Strop_0144	-	UbiC transcription regulator-associated domain-containing protein
145	 69.33	0	156051..156764	+	237	145592711	-	Strop_0145	-	GntR family transcriptional regulator
146	 70.10	0	156964..158682	+	572	145592712	-	Strop_0146	-	arginyl-tRNA synthetase
147	 70.81	0	158771..160195	+	474	145592713	-	Strop_0147	-	adenylosuccinate lyase
148	 69.84	0	160272..160838	-	188	145592714	-	Strop_0148	-	hypothetical protein
149	 68.57	0	160862..161545	-	227	145592715	-	Strop_0149	-	peptidase S1 and S6, chymotrypsin/Hap
150	 65.14	-1	161742..162200	+	152	145592716	-	Strop_0150	-	phosphoribosylformylglycinamidine synthase, purS
151	 70.93	0	162197..162877	+	226	145592717	-	Strop_0151	-	phosphoribosylformylglycinamidine synthase I
152	 71.23	0	162945..165419	+	824	145592718	-	Strop_0152	-	phosphoribosylformylglycinamidine synthase II
153	 69.38	0	165584..167938	-	784	145592719	-	Strop_0153	-	hypothetical protein
154	 69.07	0	168245..169825	+	526	145592720	-	Strop_0154	-	amidophosphoribosyltransferase
155	 67.88	0	169887..171041	+	384	145592721	-	Strop_0155	-	phosphoribosylformylglycinamidine cyclo-ligase
156	 68.61	0	171178..172311	+	377	145592722	-	Strop_0156	-	radical SAM domain-containing protein
157	 69.62	0	172280..172516	+	78	145592723	-	Strop_0157	-	hypothetical protein
158	 63.43	-1	172731..172946	-	71	145592724	-	Strop_0158	-	hypothetical protein
159	 69.90	0	173238..174320	-	360	145592725	-	Strop_0159	-	Glu/Leu/Phe/Val dehydrogenase, dimerisation region
160	 70.71	0	174389..175378	+	329	145592726	-	Strop_0160	-	hypothetical protein
161	 67.62	0	175631..175840	+	69	145592727	-	Strop_0161	-	DNA binding domain-containing protein
162	 71.22	0	175963..176445	-	160	145592728	-	Strop_0162	-	hypothetical protein
163	 69.93	0	176579..177436	+	285	145592729	-	Strop_0163	-	3-hydroxybutyryl-CoA dehydrogenase
164	 71.63	0	177412..178176	+	254	145592730	-	Strop_0164	-	enoyl-CoA hydratase/isomerase
165	 68.61	0	178292..179626	-	444	145592731	-	Strop_0165	-	ABC-type branched-chain amino acid transport systems periplasmic component-like protein
166	 69.23	0	179773..180279	-	168	145592732	-	Strop_0166	-	activator of Hsp90 ATPase 1 family protein
167	 66.45	0	180519..180980	+	153	145592733	-	Strop_0167	-	hypothetical protein
168	 69.39	0	180983..182266	+	427	145592734	-	Strop_0168	-	sterol 3-beta-glucosyltransferase
169	 61.73	-2	182587..183477	+	296	145592735	-	Strop_0169	-	hypothetical protein
170	 61.96	-2	183716..184564	-	282	145592736	-	Strop_0170	-	abortive infection protein
69.44	MEAN

3.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.