version 1.0
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome - 1..4755700 4413 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3535 57.30 0 3761125..3762138 - 337 62182127 dppF SC3557 - dipeptide transporter ATP-binding subunit 3536 55.69 0 3762135..3763118 - 327 62182128 dppD SC3558 - dipeptide transporter ATP-binding subunit 3537 60.02 +1 3763129..3764031 - 300 62182129 dppC SC3559 - dipeptide transporter 3538 56.37 0 3764041..3765060 - 339 62182130 dppB SC3560 - dipeptide transporter permease DppB 3539 52.05 0 3765217..3766824 - 535 62182131 dppA SC3561 - peptide ABC transporter permease 3540 54.83 0 3767380..3768705 - 441 62182132 pucJ SC3562 - putative xanthine permease 3541 57.42 0 3768763..3769887 - 374 62182133 - SC3563 - PQQ repeat-containing protein 3542 41.78 -1 3769875..3770087 - 70 62182134 - SC3564 - hypothetical protein 3543 40.12 -2 3769909..3770070 + 53 62182135 - SC3565 - hypothetical protein 3544 59.62 +1 3770037..3771044 + 335 62182136 celR SC3566 - LacI family regulatory protein 3545 51.71 0 3771357..3773048 - 563 162139529 yhjW SC3567 - phosphoethanolamine transferase 3546 51.14 0 3773266..3773793 - 175 62182138 lpfE SC3568 - long polar fimbrial minor protein 3547 46.76 0 3773799..3774878 - 359 62182139 lpfD SC3569 - long polar fimbrial operon protein 3548 44.92 -1 3777447..3778145 - 232 62182140 lpfB SC3570 - long polar fimbrial chaperone 3549 46.37 0 3778230..3778766 - 178 62182141 lpfA SC3571 - long polar fimbria 3550 55.24 0 3779114..3779218 - 34 62182142 yhjX SC3572 - hypothetical protein 3551 54.47 0 3779272..3779976 - 234 62182143 yhjY SC3573 - hypothetical protein 3552 52.23 0 3780133..3780714 + 193 62182144 tag SC3574 - 3-methyl-adenine DNA glycosylase I 3553 51.47 0 3780692..3781132 + 146 62182145 yiaC SC3575 - hypothetical protein 3554 57.75 +1 3781101..3783434 - 777 62182146 - SC3576 - biotin sulfoxide reductase 3555 58.97 +1 3783587..3784249 + 220 62182147 yiaD SC3577 - putative outer membrane lipoprotein 3556 56.72 0 3784468..3785442 + 324 62182148 yiaE SC3578 - 2-hydroxyacid dehydrogenase 3557 55.41 0 3785492..3786202 - 236 62182149 yiaF SC3579 - hypothetical protein 3558 46.39 0 3786641..3786931 + 96 62182150 yiaG SC3580 - putative transcriptional regulator 3559 47.42 0 3787219..3787431 + 70 62182151 cspA SC3581 - major cold shock protein 3560 49.63 0 3787605..3788144 + 179 62182152 - SC3582 - hypothetical protein 3561 50.50 0 3788396..3788797 + 133 62182153 - SC3583 - putative cytoplasmic protein 3562 50.15 0 3788968..3789651 + 227 62182154 yis2 SC3584 - putative integrase protein 3563 49.18 0 3789830..3790315 - 161 62182155 - SC3585 - putative acetyltransferase 3564 47.22 0 3790303..3790590 - 95 62182156 - SC3586 - putative cytoplasmic protein 3565 41.24 -1 3790768..3791235 - 155 62182157 yafP SC3587 - putative acetyltransferase 3566 37.50 -2 3791407..3791598 - 63 62182158 insK SC3588 - putative transposase insK for insertion sequence e 3567 44.83 -1 3792031..3793239 - 402 62182159 tnp SC3589 - transposase of Tn10 3568 57.15 0 3793408..3795477 - 689 62182160 glyS SC3590 - glycyl-tRNA synthetase subunit beta 3569 55.70 0 3795487..3796398 - 303 62182161 glyQ SC3591 - glycyl-tRNA synthetase subunit alpha 3570 48.18 0 3796537..3796839 - 100 62182162 - SC3592 - putative outer membrane lipoprotein 3571 48.09 0 3797005..3798000 + 331 62182163 yiaH SC3593 - putative inner membrane protein 3572 51.13 0 3798023..3798376 - 117 62182164 yiaB SC3594 - hypothetical protein 3573 57.66 0 3798551..3800005 - 484 62182165 xylB SC3595 - xylulokinase 3574 53.82 0 3800105..3801427 - 440 62182166 xylA SC3596 - xylose isomerase 3575 52.67 0 3801790..3802968 + 392 62182167 xylR SC3597 - xylose operon regulatory protein 3576 52.36 0 3803029..3803853 - 274 62182168 bax SC3598 - hypothetical protein 3577 58.51 +1 3804169..3804891 + 240 62182169 malS SC3599 - alpha-amylase 3578 63.51 +2 3804768..3804989 + 73 62182170 lyxK SC3600 - L-xylulose kinase, cryptic 3579 60.78 +1 3804986..3805648 + 220 62182171 sgbH SC3601 - 3-keto-L-gulonate-6-phosphate decarboxylase 3580 57.84 +1 3805641..3806501 + 286 62182172 sgbU SC3602 - putative L-xylulose 5-phosphate 3-epimerase 3581 54.04 0 3807351..3808166 - 271 62182173 yisR SC3603 - AraC family regulatory protein 3582 54.91 0 3810559..3812097 - 512 62182174 aldB SC3604 - aldehyde dehydrogenase B (lactaldehyde dehydrogenase) 3583 56.69 0 3812266..3813147 + 293 62182175 - SC3605 - putative transcriptional regulator 3584 56.94 0 3813395..3815245 - 616 62182176 selB SC3606 - selenocysteinyl-tRNA-specific translation factor 3585 59.63 +1 3815242..3816633 - 463 62182177 selA SC3607 - selenocysteine synthase 3586 55.50 0 3816732..3817340 - 202 62182178 yibF SC3608 - putative glutathione S-transferase 3587 54.77 0 3817816..3819732 + 638 62182179 mtlA SC3609 - PTS family, mannitol-specific enzyme IIABC components 3588 54.38 0 3819938..3821101 + 387 62182180 mtlD SC3610 - mannitol-1-phosphate 5-dehydrogenase 3589 53.47 0 3821098..3821688 + 196 62182181 mtlR SC3611 - mannitol repressor protein 3590 49.05 0 3821698..3821907 - 69 62182182 - SC3612 - hypothetical protein 3591 50.96 0 3822198..3822560 + 120 62182183 yibL SC3613 - hypothetical protein 3592 37.72 -2 3823048..3823731 + 227 62182184 - SC3614 - putative inner membrane lipoprotein 3593 52.82 0 3823775..3828115 + 1446 62182185 dspP SC3615 - putative inner membrane protein 3594 57.31 0 3828414..3830069 + 551 62182186 lldP SC3616 - L-lactate permease 3595 57.06 0 3830066..3830773 + 235 62182187 lldR SC3617 - DNA-binding transcriptional repressor LldR 3596 59.87 +1 3830839..3832029 + 396 62182188 lldD SC3618 - L-lactate dehydrogenase 3597 56.33 0 3832094..3832567 + 157 62182189 yibK SC3619 - putative tRNA/rRNA methyltransferase YibK 3598 54.92 0 3832635..3833690 - 351 62182190 lacI SC3620 - putative transcriptional regulator 3599 54.30 0 3833958..3835154 + 398 62182191 yin SC3621 - mandelate racemase/muconate lactonizing family protein 3600 55.72 0 3836621..3837442 - 273 62182192 cysE SC3622 - serine acetyltransferase 3601 57.55 0 3837520..3838539 - 339 62182193 gpsA SC3623 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3602 50.85 0 3838539..3839006 - 155 62182194 secB SC3624 - preprotein translocase subunit SecB 3603 51.19 0 3839050..3839301 - 83 62182195 grxC SC3625 - glutaredoxin 3 3604 50.00 0 3839387..3839818 - 143 62182196 yibN SC3626 - putative rhodanese-related sulfurtransferase 3605 54.82 0 3840066..3841610 + 514 62182197 pmgI SC3627 - phosphoglyceromutase 3606 59.19 +1 3841620..3842903 + 427 62182198 yibP SC3628 - hypothetical protein 3607 55.97 0 3842907..3843869 + 320 62182199 yigQ SC3629 - hypothetical protein 3608 49.43 0 3843856..3844818 - 320 62182200 yibD SC3630 - putative glycosyl transferase 3609 53.22 0 3845183..3846208 - 341 62182201 tdh SC3631 - L-threonine 3-dehydrogenase 3610 55.97 0 3846218..3847414 - 398 62182202 kbl SC3632 - 2-amino-3-ketobutyrate coenzyme A ligase 3611 50.59 0 3847617..3848549 + 310 62182203 rfaD SC3633 - ADP-L-glycero-D-mannoheptose-6-epimerase 3612 58.45 +1 3848552..3849598 + 348 62182204 rfaF SC3634 - ADP-heptose:LPS heptosyltransferase II 3613 54.72 0 3849598..3850551 + 317 62182205 rfaC SC3635 - ADP-heptose:LPS heptosyl transferase I 3614 40.08 -2 3850591..3851805 + 404 62182206 WaaL SC3636 - hypothetical protein 3615 41.19 -1 3851863..3853008 - 381 62182207 rfaK SC3637 - putative hexose transferase, lipopolysaccharide core biosynthesis 3616 37.78 -2 3853108..3853917 - 269 62182208 rfaZ SC3638 - lipopolysaccharide core biosynthesis protein 3617 33.62 -2 3854067..3854765 - 232 62182209 rfaY SC3639 - lipopolysaccharide core biosynthesis protein 3618 34.82 -2 3854788..3855798 - 336 62182210 rfaJ SC3640 - UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase 3619 38.07 -2 3855816..3856829 - 337 62182211 rfaI SC3641 - UDP-D-galactose:(glucosyl)lipopolysaccharide-alpha-1,3-D-galactosyltransferase 3620 39.35 -2 3856835..3857914 - 359 62182212 rfaB SC3642 - UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltrans ferase 3621 31.62 -2 3857984..3858217 - 77 62182213 yibR SC3643 - putative inner membrane protein 3622 46.24 -1 3858249..3859046 - 265 62182214 rfaP SC3644 - lipopolysaccharide core biosynthesis; phosphorylation of core heptose 3623 48.18 0 3859039..3860163 - 374 62182215 rfaG SC3645 - glucosyltransferase I 3624 47.53 0 3860160..3861230 - 356 62182216 rfaQ SC3646 - lipopolysaccharide core biosynthesis protein 3625 54.85 0 3861639..3862916 + 425 62182217 kdtA SC3647 - 3-deoxy-D-manno-octulosonic-acid transferase 3626 52.92 0 3862925..3863404 + 159 62182218 coaD SC3648 - phosphopantetheine adenylyltransferase 3627 55.19 0 3863431..3864240 - 269 62182219 mutM SC3649 - formamidopyrimidine-DNA glycosylase 3628 41.07 -1 3864338..3864505 - 55 62182220 rpmG SC3650 - 50S ribosomal protein L33 3629 51.90 0 3864526..3864762 - 78 62182221 rpmB SC3651 - 50S ribosomal protein L28 3630 52.85 0 3864980..3865645 - 221 62182222 radC SC3652 - DNA repair protein RadC 3631 55.36 0 3865821..3867041 + 406 162139528 dfp SC3653 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 3632 55.34 0 3867019..3867477 + 152 62182224 dut SC3654 - deoxyuridine 5'-triphosphate nucleotidohydrolase 3633 51.93 0 3867585..3868181 + 198 62182225 slmA SC3655 - nucleoid occlusion protein 3634 54.21 0 3868259..3868900 - 213 62182226 pyrE SC3656 - orotate phosphoribosyltransferase 52.01 MEAN 5.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0