IslandPathversion 1.0

IslandPath Analysis: Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.01 STD DEV: 5.72
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome - 1..4755700
4413 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
295	 46.43	0	344236..344487	-	83	62178868	-	SC0298	-	hypothetical protein
296	 53.18	0	344862..345128	-	88	62178869	istB	SC0299	-	hypothetical protein
297	 48.24	0	346343..347053	+	236	62178870	tcfA	SC0300	-	putative fimbrial protein
298	 47.05	0	347104..347679	+	191	62178871	tcfB	SC0301	-	putative fimbrial subunit
299	 45.24	-1	350498..351043	+	181	62178872	tcfD	SC0302	-	putative fimbrail protein
300	 49.55	0	351028..351588	+	186	62178873	tcfD	SC0303	-	putative fimbrail protein
301	 33.12	-2	351703..352176	+	157	62178874	tinR	SC0304	-	transcriptional regulator
302	 34.30	-2	352316..352933	+	205	62178875	TioA	SC0305	-	hypothetical protein
303	 47.06	0	353699..353851	-	50	62178876	-	SC0306	-	hypothetical protein
304	 42.64	-1	353897..354616	-	239	62178877	sapA	SC0307	-	sapA-like protein
305	 47.06	0	354962..355369	-	135	62178878	virG	SC0308	-	hypothetical protein
306	 54.17	0	355679..356446	-	255	62178879	yafV	SC0309	-	hypothetical protein
307	 55.95	0	356555..358999	-	814	62178880	fadE	SC0310	-	acyl-CoA dehydrogenase
308	 48.01	0	359239..359817	+	192	62178881	gmhA	SC0311	-	phosphoheptose isomerase
309	 51.30	0	360030..360797	+	255	62178882	yafJ	SC0312	-	hypothetical protein
310	 48.08	0	360768..361391	-	207	62178883	yafK	SC0313	-	hypothetical protein
311	 51.80	0	361755..362810	+	351	62178884	dinP	SC0314	-	DNA polymerase IV
312	 57.28	0	363029..364168	+	379	162139611	ykfJ	SC0315	-	hypothetical protein
313	 55.77	0	364165..364779	+	204	62178886	prfH	SC0316	-	peptide chain release factor-like protein
314	 53.22	0	364935..366392	-	485	62178887	pepD	SC0317	-	aminoacyl-histidine dipeptidase (peptidase D)
315	 53.16	0	366641..367099	+	152	62178888	gpt	SC0318	-	xanthine-guanine phosphoribosyltransferase
316	 54.86	0	367188..368432	+	414	62178889	frsA	SC0319	-	fermentation/respiration switch protein
317	 50.25	0	368490..368891	+	133	62178890	crl	SC0320	-	DNA-binding transcriptional regulator Crl
318	 46.91	0	368942..369994	-	350	62178891	phoE	SC0321	-	outer membrane phosphoporin protein E
319	 55.80	0	370276..371379	+	367	62178892	proB	SC0322	-	gamma-glutamyl kinase
320	 56.27	0	371391..372641	+	416	62178893	proA	SC0323	-	gamma-glutamyl phosphate reductase
321	 48.80	0	372847..374010	-	387	62178894	int	SC0324	-	hypothetical protein
322	 43.71	-1	374240..374875	-	211	62178895	eac	SC0325	-	EaC protein
323	 50.09	0	374946..376121	-	391	62178896	eaa	SC0326	-	Eaa protein
324	 48.05	0	376118..376579	-	153	62178897	-	SC0327	-	hypothetical protein
325	 49.23	0	376576..377097	-	173	62178898	-	SC0328	-	hypothetical protein
326	 47.86	0	377094..377327	-	77	62178899	-	SC0329	-	hypothetical protein
327	 47.35	0	377324..377701	-	125	62178900	eae	SC0330	-	Eae protein
328	 46.63	0	378809..379357	-	182	62178901	exoD	SC0331	-	endodeoxyribonuclease
329	 50.30	0	379366..379872	-	168	62178902	ssb	SC0332	-	ssDNA-binding protein controls activity of RecBCD nuclease
330	 47.74	0	379873..380580	-	235	62178903	-	SC0333	-	hypothetical protein
331	 46.56	0	380710..380898	-	62	62178904	kil	SC0334	-	host septation inhibitor
332	 47.70	0	380879..381052	-	57	62178905	rpc	SC0335	-	C3-like protein
333	 38.81	-2	381244..381444	-	66	62178906	-	SC0336	-	hypothetical protein
334	 50.78	0	381513..381770	-	85	62178907	-	SC0337	-	43L-like protein
335	 49.50	0	382199..382501	-	100	62178908	regN	SC0338	-	antitermination protein
336	 46.30	0	383603..383818	+	71	62178909	cro	SC0339	-	regulatory protein Cro (antirepressor)
337	 45.94	-1	384386..385234	+	282	62178910	rpo	SC0340	-	replication protein O
338	 50.98	0	385342..387222	+	626	62178911	-	SC0341	-	hypothetical protein
339	 46.28	-1	388012..388884	+	290	62178912	nin	SC0342	-	phosphoadenosine phosphosulfate reductase family protein
340	 49.40	0	388943..389278	-	111	62178913	stx	SC0343	-	hypothetical protein
341	 51.52	0	389632..390027	+	131	62178914	rusA	SC0344	-	endodeoxyribonuclease RUS
342	 53.89	0	390208..390387	+	59	62178915	ninZ	SC0345	-	NinZ
343	 44.12	-1	390384..390902	+	172	62178916	-	SC0346	-	gp23-like protein
344	 48.46	0	391363..391686	+	107	62178917	-	SC0347	-	holin-like protein
345	 44.72	-1	391561..391683	-	40	62178918	-	SC0348	-	hypothetical protein
346	 51.15	0	391670..392146	+	158	62178919	lycV	SC0349	-	lysin
347	 50.68	0	392143..392580	+	145	62178920	enpP	SC0350	-	Rz lysis protein
348	 42.94	-1	392786..393274	+	162	62178922	-	SC0352	-	hypothetical protein
349	 45.68	-1	393765..394007	+	80	62178923	-	SC0353	-	hypothetical protein
350	 50.47	0	394509..396008	+	499	62178924	-	SC0354	-	gp2-like protein
351	 50.92	0	396009..398174	+	721	62178925	-	SC0355	-	putative packaging glycoprotein
352	 52.85	0	398188..399099	+	303	62178926	-	SC0356	-	scaffolding protein
353	 50.69	0	399099..400394	+	431	62178927	-	SC0357	-	coat protein
354	 49.30	0	400653..401153	+	166	62178928	-	SC0358	-	DNA stabilization protein
355	 50.81	0	401154..402572	+	472	62178929	-	SC0359	-	DNA stabilization protein
356	 43.19	-1	402576..403214	+	212	62178930	-	SC0360	-	packaged DNA stabilization protein gp26
357	 49.56	0	403214..403669	+	151	62178931	-	SC0361	-	hypothetical protein
358	 53.19	0	403672..404361	+	229	62178932	-	SC0362	-	DNA transfer protein gp7 precursor
359	 51.44	0	404404..405723	+	439	62178933	-	SC0363	-	DNA transfer protein gp20
360	 51.25	0	405723..407636	+	637	62178934	-	SC0364	-	TPA: injection protein
361	 34.55	-2	407654..407983	-	109	62178936	-	SC0366	-	hypothetical protein
362	 43.33	-1	408223..409983	+	586	62178937	-	SC0367	-	hypothetical protein
363	 38.97	-2	410259..411713	-	484	62178938	-	SC0368	-	hypothetical protein
364	 46.49	0	411703..412629	-	308	62178939	gtrB	SC0369	-	bactoprenol glucosyl transferase
365	 41.19	-1	412629..412997	-	122	62178940	gtrA	SC0370	-	bactoprenol-linked glucose translocase
366	 54.40	0	413672..414535	-	287	62178941	insF	SC0371	-	putative IS3 transposase
367	 46.30	0	415277..415600	+	107	62178942	yoaC	SC0372	-	putative cytoplasmic protein
368	 42.68	-1	415842..417179	+	445	62178943	ynfM	SC0373	-	putative permease
369	 51.27	0	417311..418732	+	473	62178944	ledL	SC0374	-	isopropylmalate isomerase large subunit
370	 51.83	0	418734..419360	+	208	62178945	ledS	SC0375	-	putative 3-isopropylmalate isomerase (dehydratase), subunit with LeuC
371	 49.94	0	419375..420253	+	292	62178946	faaH	SC0376	-	putative fumarylacetoacetate (FAA) hydrolase
372	 51.58	0	420253..421167	+	304	62178947	deh	SC0377	-	putative hydrolase or acyltransferase
373	 48.96	0	421201..422166	+	321	62178948	ygiP	SC0378	-	LysR family transcriptional regulator
374	 35.59	-2	423074..423472	+	132	62178949	-	SC0379	-	putative outer membrane protein
375	 52.04	0	424244..425569	-	441	62178950	stbD	SC0380	-	putative fimbriae; usher
376	 54.06	0	425574..428135	-	853	62178951	stbC	SC0381	-	putative fimbriae; usher
377	 45.41	-1	428119..428880	-	253	62178952	stbB	SC0382	-	putative fimbriae; chaparone
378	 47.49	0	428942..429478	-	178	62178953	stbA	SC0383	-	putative fimbriae; major subunit
379	 36.08	-2	430112..430876	+	254	62178954	-	SC0384	-	putative inner membrane protein
380	 37.92	-2	430849..431349	+	166	62178955	-	SC0385	-	putative periplasmic protein
381	 48.51	0	431649..433223	+	524	62178956	rtn	SC0386	-	diguanylate cyclase/phosphodiesterase domain-containing protein
382	 40.19	-2	433323..434066	+	247	62178957	-	SC0387	-	putative response regulator
383	 39.47	-2	434039..434527	+	162	62178958	-	SC0388	-	putative inner membrane protein
384	 40.76	-1	434928..435452	+	174	62178959	ail	SC0389	-	hypothetical protein
385	 40.03	-2	435596..436237	+	213	62178960	-	SC0390	-	putative response regulator
386	 35.56	-2	436248..436472	+	74	62178961	-	SC0391	-	putative inner membrane protein
387	 48.89	0	436530..436889	+	119	62178962	yjeI	SC0392	-	putative outer membrane lipoprotein
388	 59.53	+1	436959..438416	-	485	62178963	oprM	SC0393	-	outer membrane efflux protein-like protein
389	 60.47	+1	441597..442823	-	408	62178964	mtrC	SC0394	-	putative cation efflux pump
390	 54.41	0	445402..445866	+	154	62178965	hmrR	SC0395	-	putative transcriptional regulator
391	 57.95	+1	445944..446138	+	64	62178966	hmb	SC0396	-	putative copper chaperone
392	 54.23	0	446430..447683	+	417	62178967	jen	SC0397	-	putative inner membrane protein
393	 46.61	0	447872..449830	+	652	62178968	mod	SC0398	-	DNA methylase; restriction system
394	 49.01	0	449840..452812	+	990	62178969	res	SC0399	-	DNA restriction (DNA helicase
52.01	MEAN

5.72	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.