version 1.0
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome - 1..4755700 4413 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1496 55.02 0 1600860..1602113 - 417 62180074 ynfM SC1504 - putative MFS familty transport protein 1497 57.22 0 1602233..1603132 + 299 62180075 ynfL SC1505 - LysR family transcriptional regulator 1498 52.01 0 1603260..1604480 + 406 62180076 mlc SC1506 - ptsG and ptsHI transcriptional repressor 1499 52.16 0 1604605..1605300 + 231 62180077 bioD SC1507 - putative dithiobiotin synthetase 1500 52.74 0 1606681..1607829 - 382 62180078 opbA SC1508 - ABC-type proline/glycine betaine transport systems, ATPase component 1501 55.25 0 1607829..1608476 - 215 62180079 opcB SC1509 - putative binding-protein-dependent transport system, inner membrane component 1502 52.27 0 1608486..1609388 - 300 62180080 opcC SC1510 - putative periplasmic component, ABC transport system 1503 54.43 0 1609417..1610127 - 236 62180081 yehW SC1511 - ABC-type transport systems, permease components 1504 54.31 0 1610432..1611046 - 204 62180082 ynfI SC1512 - twin-argninine leader-binding protein DmsD 1505 56.88 0 1611089..1611946 - 285 62180083 ynfH SC1513 - putative dimethylsulfoxide reductase 1506 60.05 +1 1611948..1612370 - 140 62180084 dmsB SC1514 - anaerobic dimethyl sulfoxide reductase, subunit B 1507 55.01 0 1612578..1615013 - 811 62180085 ynfF SC1515 - putative dimethyl sulphoxide reductase 1508 54.22 0 1615112..1617553 - 813 62180086 ynfE SC1516 - putative dimethyl sulphoxide reductase, chain A1 1509 55.02 0 1617707..1618015 - 102 62180087 ynfD SC1517 - putative outer membrane protein 1510 50.35 0 1618119..1618829 + 236 162139589 ynfC SC1518 - hypothetical protein 1511 48.13 0 1618870..1619430 - 186 62180089 speG SC1519 - spermidine N1-acetyltransferase 1512 52.34 0 1619466..1619807 - 113 62180090 ynfB SC1520 - hypothetical protein 1513 56.55 0 1619950..1620285 + 111 162139588 ynfA SC1521 - hypothetical protein 1514 54.65 0 1620407..1621621 + 404 62180092 rspA SC1522 - putative dehydratase, starvation sensing protein 1515 51.27 0 1621632..1622651 + 339 62180093 rspB SC1523 - putative dehydrogenase 1516 50.00 0 1622705..1624216 + 503 62180094 ydfJ SC1524 - putative membrane transport protein 1517 55.90 0 1624227..1625693 + 488 62180095 ydfI SC1525 - putative mannitol dehydrogenase 1518 51.69 0 1625760..1626026 - 88 62180096 ydfZ SC1526 - hypothetical protein 1519 50.66 0 1626144..1626830 - 228 62180097 ydfH SC1527 - GntR family transcriptional regulator 1520 53.28 0 1626960..1627706 - 248 62180098 ydfG SC1528 - 3-hydroxy acid dehydrogenase 1521 53.70 0 1627845..1629887 + 680 62180099 dcp SC1529 - dipeptidyl carboxypeptidase II 1522 46.15 -1 1630180..1630413 + 77 62180100 yciG SC1530 - putative cytoplasmic protein 1523 47.47 0 1630285..1630482 - 65 62180101 yciF SC1531 - hypothetical protein 1524 48.48 0 1630533..1631060 - 175 62180102 ydeJ SC1532 - competence damage-inducible protein A 1525 47.07 0 1631487..1631879 + 130 62180103 ydeI SC1533 - hypothetical protein 1526 51.80 0 1632553..1633749 - 398 62180104 ydeE SC1534 - putative MFS-type transporter YdeE 1527 53.38 0 1633977..1634879 + 300 62180105 ydeD SC1535 - O-acetylserine/cysteine export protein 1528 50.00 0 1634998..1635255 - 85 62180106 marB SC1536 - hypothetical protein 1529 46.61 0 1635242..1635625 - 127 62180107 marA SC1537 - DNA-binding transcriptional activator MarA 1530 48.05 0 1635645..1636079 - 144 62180108 marR SC1538 - DNA-binding transcriptional repressor MarR 1531 53.45 0 1636338..1637003 + 221 62180109 marC SC1539 - multiple drug resistance protein MarC 1532 53.06 0 1637050..1638240 - 396 62180110 ydeA SC1540 - sugar efflux transporter 1533 56.80 0 1639331..1640719 + 462 62180111 yneI SC1541 - putative succinate-semialdehyde dehydrogenase 1534 54.58 0 1640792..1641718 + 308 62180112 yneH SC1542 - glutaminase 1535 54.44 0 1641718..1642077 + 119 62180113 yneG SC1543 - hypothetical protein 1536 45.57 -1 1642301..1643248 + 315 62180114 yneE SC1544 - putative inner membrane protein 1537 48.99 0 1643304..1643846 - 180 62180115 - SC1545 - putative outer membrane protein 1538 43.43 -1 1643734..1643931 - 65 62180116 - SC1546 - hypothetical protein 1539 46.02 -1 1644563..1645681 + 372 62180117 ompC SC1547 - putative outer membrane protein 1540 50.29 0 1645822..1646163 - 113 62180118 hybF SC1548 - putative hydrogenase 1541 54.14 0 1646176..1646997 - 273 62180119 hupK SC1549 - putative dehydrogenase protein 1542 50.00 0 1647051..1648112 - 353 62180120 hoxQ SC1550 - putative hydrogenase 1543 53.04 0 1648130..1648540 - 136 62180121 hyaE SC1551 - putative hydrogenase 1544 56.33 0 1648537..1648836 - 99 62180122 hupF SC1552 - putative hydrogenase protein 1545 53.04 0 1648836..1649444 - 202 62180123 hupD SC1553 - putative hydrogenase maturation protease 1546 51.11 0 1649450..1650124 - 224 62180124 cybH SC1554 - putative Ni/Fe-hydrogenase 1 b-type cytochrome subunit 1547 53.73 0 1650144..1650947 - 267 62180125 mbhL SC1555 - putative hydrogenase-1 large subunit 1548 51.52 0 1650950..1651279 - 109 62180126 mbhS SC1556 - putative hydrogenase-1 small subunit 1549 44.31 -1 1651177..1651686 - 169 62180127 pqaA SC1557 - PhoPQ-regulated protein 1550 50.00 0 1652035..1652172 - 45 62180128 - SC1558 - putative multidrug efflux protein 1551 54.70 0 1652136..1652603 - 155 62180129 - SC1559 - putative monooxygenase 1552 53.93 0 1653209..1654543 - 444 62180130 treY SC1560 - putative glycosyl hydrolase 1553 53.95 0 1654540..1656324 - 594 62180131 treZ SC1561 - putative alpha amylase 1554 54.07 0 1656453..1657238 - 261 62180132 - SC1562 - putative outer membrane or secreted lipoprotein 1555 44.85 -1 1657381..1657710 - 109 62180133 hdeB SC1563 - acid-resistance protein 1556 51.85 0 1658060..1658491 - 143 62180134 osmC SC1564 - putative resistance protein, osmotically inducible 1557 49.07 0 1659003..1659218 + 71 62180135 yddX SC1565 - biofilm-dependent modulation protein 1558 50.00 0 1659313..1659456 + 47 62180136 rpsV SC1566 - 30S ribosomal subunit S22 1559 52.88 0 1659597..1661330 + 577 62180137 sfcA SC1567 - malate dehydrogenase 1560 53.31 0 1661616..1662626 + 336 62180138 adhP SC1568 - alcohol dehydrogenase 1561 48.40 0 1662717..1663373 - 218 62180139 fdnI SC1569 - formate dehydrogenase-N subunit gamma 1562 53.79 0 1663366..1664250 - 294 62180140 fdnH SC1570 - formate dehydrogenase-N, Fe-S beta subunit, nitrate-inducible 1563 50.23 0 1667589..1668470 + 293 162139587 yddG SC1571 - hypothetical protein 1564 50.41 0 1668993..1670081 + 362 62180142 nmpC SC1572 - new outer membrane protein; porin 1565 55.10 0 1670165..1670605 + 146 62180143 - SC1573 - putative cytoplasmic protein 1566 57.80 +1 1670630..1672117 - 495 62180144 smvA SC1574 - methyl viologen resistance 1567 56.48 0 1672235..1672813 + 192 62180145 - SC1575 - TetR family transcriptional regulator 1568 52.27 0 1673027..1674415 + 462 62180146 narU SC1576 - major facilitator superfamily nitrate extrusion protein 1569 53.66 0 1678244..1679788 + 514 62180147 narY SC1577 - nitrate reductase 2, beta subunit 1570 54.46 0 1679788..1681155 + 455 62180148 narV SC1578 - nitrate reductase 2, gamma subunit 1571 53.13 0 1681260..1682153 + 297 62180149 yddE SC1579 - hypothetical protein 1572 48.21 0 1682189..1682356 - 55 62180150 nhoA SC1580 - putative arylamine N-acetyltransferase 1573 42.34 -1 1682657..1683289 - 210 62180151 - SC1581 - hypothetical protein 1574 53.41 0 1683802..1685295 + 497 62180152 ansP SC1582 - L-asparagine APC transporter 1575 43.24 -1 1685372..1685593 - 73 62180153 ygdR SC1583 - putative outer membrane lipoprotein 1576 51.60 0 1685738..1686799 - 353 62180154 yncE SC1584 - putative periplasmic protein 1577 53.04 0 1687063..1689183 + 706 162139586 yncD SC1585 - paral putative outer membrane receptor 1578 53.78 0 1690238..1691308 - 356 62180156 yncB SC1586 - putative NADP-dependent oxidoreductase 1579 55.23 0 1691487..1692002 + 171 62180157 yncA SC1587 - putative acyltransferase 1580 55.33 0 1692002..1692451 + 149 62180158 ydcZ SC1588 - hypothetical protein 1581 56.84 0 1692456..1692689 - 77 62180159 ydcY SC1589 - hypothetical protein 1582 55.96 0 1692913..1694238 + 441 62180160 srfA SC1590 - ssrAB activated gene 1583 55.20 0 1694243..1697224 + 993 62180161 srfB SC1591 - ssrAB activated gene 1584 57.06 0 1697221..1699365 + 714 62180162 srfC SC1592 - ssrAB activated gene: coiled-coil structure 1585 43.94 -1 1699410..1699673 - 87 62180163 ydcX SC1593 - putative inner membrane protein 1586 55.79 0 1699982..1701406 - 474 162139585 ydcW SC1594 - gamma-aminobutyraldehyde dehydrogenase 1587 53.05 0 1701542..1702966 - 474 62180165 ydcR SC1595 - GntR family transcriptional regulator 1588 47.34 0 1703102..1703872 - 256 62180166 pdgL SC1596 - periplasmic dipeptidase for D-ala-D-ala digestion in peptidoglycan 1589 41.99 -1 1704131..1704361 - 76 62180167 - SC1597 - putative inner membrane protein 1590 40.10 -2 1704394..1704792 - 132 62180168 ugtL SC1598 - hypothetical protein 1591 37.43 -2 1705329..1706279 + 316 162139584 sifB SC1599 - secreted effector protein 1592 51.95 0 1706553..1706783 + 76 62180170 yncJ SC1600 - hypothetical protein 1593 52.72 0 1706784..1708748 - 654 62180171 ydcP SC1601 - putative collagenase 1594 53.07 0 1708827..1709363 - 178 62180172 ydcN SC1602 - putative oxidoreductase/putative repressor 1595 56.74 0 1709394..1710632 + 412 62180173 ydcO SC1603 - putative benzoate membrane transport protein 52.01 MEAN 5.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0